Wall clock time and date at job start Tue Mar 31 2020 05:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47106 * 2 1 4 4 C 1.53001 * 109.47385 * 239.99550 * 2 1 3 5 5 C 1.50706 * 109.47038 * 119.99863 * 2 1 3 6 6 O 1.20763 * 119.99744 * 359.97438 * 5 2 1 7 7 C 1.50697 * 119.99893 * 180.02562 * 5 2 1 8 8 C 1.53004 * 109.46819 * 180.02562 * 7 5 2 9 9 C 1.53006 * 109.46762 * 179.97438 * 8 7 5 10 10 C 1.50704 * 109.46734 * 179.97438 * 9 8 7 11 11 O 1.21287 * 120.00465 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99542 * 180.02562 * 10 9 8 13 13 C 1.37099 * 119.99912 * 180.02562 * 12 10 9 14 14 H 1.08004 * 120.00188 * 224.29023 * 13 12 10 15 15 C 1.38951 * 120.00013 * 44.28140 * 13 12 10 16 16 N 1.31415 * 119.99916 * 18.21994 * 15 13 12 17 17 Si 1.86799 * 120.00068 * 198.20957 * 15 13 12 18 18 H 1.48494 * 109.46955 * 60.00634 * 17 15 13 19 19 H 1.48506 * 109.47098 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47286 * 300.00069 * 17 15 13 21 21 C 1.46503 * 120.00147 * 0.02562 * 12 10 9 22 22 C 1.53000 * 117.49420 * 183.22797 * 21 12 10 23 23 C 1.53000 * 117.49693 * 114.60597 * 21 12 10 24 24 H 1.09007 * 109.47080 * 299.99902 * 1 2 3 25 25 H 1.08999 * 109.46922 * 60.00339 * 1 2 3 26 26 H 1.09000 * 109.47384 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47036 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.46954 * 299.99642 * 3 2 1 29 29 H 1.09000 * 109.47418 * 59.99945 * 3 2 1 30 30 H 1.09000 * 109.47244 * 300.00557 * 4 2 1 31 31 H 1.09006 * 109.46356 * 60.00231 * 4 2 1 32 32 H 1.08999 * 109.47167 * 180.02562 * 4 2 1 33 33 H 1.09001 * 109.47252 * 60.00247 * 7 5 2 34 34 H 1.08997 * 109.47171 * 299.99503 * 7 5 2 35 35 H 1.08991 * 109.47240 * 59.99871 * 8 7 5 36 36 H 1.08994 * 109.47078 * 299.99269 * 8 7 5 37 37 H 1.08997 * 109.47371 * 299.99455 * 9 8 7 38 38 H 1.09001 * 109.47109 * 60.00233 * 9 8 7 39 39 H 0.96996 * 119.99767 * 174.92246 * 16 15 13 40 40 H 1.09003 * 115.54901 * 328.92891 * 21 12 10 41 41 H 1.09001 * 117.50531 * 359.97438 * 22 21 12 42 42 H 1.09000 * 117.49731 * 145.02011 * 22 21 12 43 43 H 1.08998 * 117.49375 * 214.97178 * 23 21 12 44 44 H 1.08994 * 117.50432 * 359.97352 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 8 1.2475 -1.1689 2.0257 7 6 3.5139 -0.8476 1.4693 8 6 3.7516 -1.6039 2.7779 9 6 5.2559 -1.7438 3.0200 10 6 5.4901 -2.4882 4.3092 11 8 4.5468 -2.8698 4.9692 12 7 6.7479 -2.7299 4.7288 13 6 6.9610 -3.4076 5.9014 14 1 7.7060 -3.0567 6.6002 15 6 6.2185 -4.5459 6.1908 16 7 5.5853 -5.1794 5.2292 17 14 6.1204 -5.1756 7.9467 18 1 5.5253 -4.1287 8.8155 19 1 5.2734 -6.3947 7.9888 20 1 7.4850 -5.5046 8.4316 21 6 7.8874 -2.2685 3.9319 22 6 9.2885 -2.6392 4.4222 23 6 8.7912 -1.1975 4.5458 24 1 -0.3634 0.5139 0.8901 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1299 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6766 -1.7490 -1.2492 31 1 1.6767 -0.2074 -2.1392 32 1 3.1300 -0.7217 -1.2489 33 1 3.9646 0.1427 1.5346 34 1 3.9653 -1.3987 0.6444 35 1 3.3010 -2.5942 2.7122 36 1 3.3002 -1.0532 3.6030 37 1 5.7071 -2.2947 2.1948 38 1 5.7070 -0.7536 3.0855 39 1 5.1282 -6.0140 5.4173 40 1 7.7238 -2.2322 2.8548 41 1 9.3626 -3.2260 5.3378 42 1 10.0471 -2.8470 3.6675 43 1 9.2228 -0.4569 3.8725 44 1 8.5380 -0.8359 5.5424 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000448788069.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:13 Heat of formation + Delta-G solvation = -80.845693 kcal Electronic energy + Delta-G solvation = -22529.553268 eV Core-core repulsion = 19253.806237 eV Total energy + Delta-G solvation = -3275.747031 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.11044 -40.32898 -37.81702 -36.67891 -35.37924 -34.50727 -32.80912 -30.02398 -28.14663 -28.00988 -26.90301 -24.66003 -23.10430 -22.75469 -22.20616 -20.75828 -19.31601 -18.20812 -17.77810 -17.01392 -16.92653 -16.66894 -16.17058 -15.86527 -15.77079 -15.29716 -14.80646 -14.64229 -14.42772 -14.05643 -13.76642 -13.26561 -13.16791 -13.08303 -13.00586 -12.90566 -12.82335 -12.65464 -12.57392 -12.41002 -12.29399 -12.17844 -12.08891 -11.84750 -11.71402 -11.66467 -11.58416 -11.16983 -10.71702 -10.33949 -9.89168 -8.94260 -8.20349 -5.97873 1.06235 1.32200 1.41881 1.44735 2.25943 2.45180 2.92875 3.13462 3.22846 3.40340 3.77069 3.92436 3.95789 4.06517 4.12353 4.18789 4.27240 4.31716 4.39467 4.54823 4.69458 4.70073 4.75427 4.77683 4.78687 4.85914 4.89950 4.93589 5.00397 5.02516 5.09219 5.13598 5.22708 5.24679 5.35442 5.40059 5.42509 5.45259 5.47908 5.52479 6.20801 6.63695 7.05731 7.25195 7.74382 8.42069 8.88449 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021001 B = 0.004034 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.964486 B = 6939.838211 C = 7877.798913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.113 4.113 3 C -0.136 4.136 4 C -0.137 4.137 5 C 0.358 3.642 6 O -0.502 6.502 7 C -0.162 4.162 8 C -0.082 4.082 9 C -0.115 4.115 10 C 0.459 3.541 11 O -0.595 6.595 12 N -0.448 5.448 13 C -0.357 4.357 14 H 0.075 0.925 15 C 0.020 3.980 16 N -0.874 5.874 17 Si 0.967 3.033 18 H -0.284 1.284 19 H -0.289 1.289 20 H -0.253 1.253 21 C 0.046 3.954 22 C -0.175 4.175 23 C -0.179 4.179 24 H 0.043 0.957 25 H 0.086 0.914 26 H 0.040 0.960 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.048 0.952 30 H 0.045 0.955 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.133 0.867 34 H 0.126 0.874 35 H 0.026 0.974 36 H 0.036 0.964 37 H 0.097 0.903 38 H 0.110 0.890 39 H 0.257 0.743 40 H 0.133 0.867 41 H 0.076 0.924 42 H 0.119 0.881 43 H 0.129 0.871 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.925 13.763 -16.471 21.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.114 4.114 3 C -0.193 4.193 4 C -0.194 4.194 5 C 0.236 3.764 6 O -0.378 6.378 7 C -0.199 4.199 8 C -0.120 4.120 9 C -0.155 4.155 10 C 0.249 3.751 11 O -0.477 6.477 12 N -0.169 5.169 13 C -0.485 4.485 14 H 0.093 0.907 15 C -0.186 4.186 16 N -0.509 5.509 17 Si 0.792 3.208 18 H -0.210 1.210 19 H -0.215 1.215 20 H -0.177 1.177 21 C -0.058 4.058 22 C -0.212 4.212 23 C -0.217 4.217 24 H 0.062 0.938 25 H 0.105 0.895 26 H 0.059 0.941 27 H 0.102 0.898 28 H 0.105 0.895 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.106 0.894 32 H 0.101 0.899 33 H 0.151 0.849 34 H 0.144 0.856 35 H 0.045 0.955 36 H 0.055 0.945 37 H 0.115 0.885 38 H 0.128 0.872 39 H 0.066 0.934 40 H 0.150 0.850 41 H 0.094 0.906 42 H 0.137 0.863 43 H 0.147 0.853 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.128 13.188 -15.743 20.538 hybrid contribution -0.485 -1.076 1.466 1.882 sum -0.613 12.113 -14.277 18.733 Atomic orbital electron populations 1.21743 0.93626 1.01569 1.02346 1.21246 0.97144 0.98459 0.94581 1.21867 1.02759 0.91546 1.03157 1.21874 1.02727 0.99579 0.95264 1.25383 0.91745 0.73897 0.85421 1.90417 1.60398 1.40402 1.46542 1.22205 0.94756 1.04435 0.98504 1.20905 0.94797 0.99212 0.97085 1.21524 0.97205 1.01645 0.95092 1.21085 0.82953 0.82050 0.89031 1.90492 1.42859 1.54685 1.59665 1.43073 1.03323 1.50013 1.20486 1.19052 1.24452 1.08019 0.96993 0.90692 1.26046 0.95525 0.95836 1.01149 1.69926 1.32424 1.14553 1.34019 0.85426 0.78688 0.76928 0.79764 1.20990 1.21454 1.17692 1.22053 0.85284 1.03260 0.95249 1.23109 0.96256 0.98306 1.03570 1.23322 1.03819 0.92258 1.02334 0.93826 0.89539 0.94060 0.89810 0.89472 0.93290 0.93588 0.89400 0.89888 0.84929 0.85574 0.95482 0.94532 0.88488 0.87155 0.93385 0.84985 0.90578 0.86328 0.85292 0.91175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 7.76 71.98 0.56 -2.09 16 2 C -0.11 -2.00 0.87 -52.93 -0.05 -2.05 16 3 C -0.14 -1.65 8.26 71.98 0.59 -1.05 16 4 C -0.14 -1.77 8.26 71.98 0.59 -1.18 16 5 C 0.36 9.56 5.97 29.10 0.17 9.73 16 6 O -0.50 -19.10 15.61 -1.46 -0.02 -19.12 16 7 C -0.16 -3.78 4.97 29.85 0.15 -3.64 16 8 C -0.08 -3.05 3.79 30.60 0.12 -2.93 16 9 C -0.11 -4.18 4.32 29.85 0.13 -4.05 16 10 C 0.46 24.14 6.96 87.66 0.61 24.75 16 11 O -0.60 -38.15 13.74 -3.05 -0.04 -38.19 16 12 N -0.45 -22.82 2.83 -613.12 -1.74 -24.55 16 13 C -0.36 -20.36 7.92 84.04 0.67 -19.69 16 14 H 0.08 4.12 7.26 -2.91 -0.02 4.10 16 15 C 0.02 1.20 4.38 84.93 0.37 1.58 16 16 N -0.87 -55.47 11.74 21.66 0.25 -55.21 16 17 Si 0.97 47.77 29.59 68.60 2.03 49.80 16 18 H -0.28 -14.29 7.11 99.48 0.71 -13.58 16 19 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 20 H -0.25 -11.29 7.11 99.48 0.71 -10.58 16 21 C 0.05 1.73 5.87 44.99 0.26 2.00 16 22 C -0.17 -5.87 9.80 30.60 0.30 -5.57 16 23 C -0.18 -5.42 10.36 30.60 0.32 -5.10 16 24 H 0.04 0.97 8.10 -2.38 -0.02 0.96 16 25 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.04 0.94 8.10 -2.39 -0.02 0.92 16 27 H 0.08 0.73 7.28 -2.39 -0.02 0.71 16 28 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.05 0.70 8.14 -2.39 -0.02 0.69 16 30 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.08 0.80 7.28 -2.39 -0.02 0.78 16 33 H 0.13 2.15 7.38 -2.39 -0.02 2.13 16 34 H 0.13 2.23 7.38 -2.39 -0.02 2.21 16 35 H 0.03 1.22 8.06 -2.39 -0.02 1.20 16 36 H 0.04 1.56 8.06 -2.39 -0.02 1.54 16 37 H 0.10 3.07 7.57 -2.39 -0.02 3.05 16 38 H 0.11 3.18 8.11 -2.39 -0.02 3.16 16 39 H 0.26 15.85 8.32 -92.71 -0.77 15.08 16 40 H 0.13 4.07 6.96 -2.39 -0.02 4.05 16 41 H 0.08 3.03 6.72 -2.39 -0.02 3.01 16 42 H 0.12 3.11 8.14 -2.39 -0.02 3.09 16 43 H 0.13 2.79 8.14 -2.39 -0.02 2.77 16 44 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -85.30 356.03 6.24 -79.07 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: 0.96 Total: 17.51 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: 4.80 Total: -9.29 kcal Atomic # 7 Polarization: -78.28 SS G_CDS: -1.48 Total: -79.77 kcal Atomic # 8 Polarization: -57.25 SS G_CDS: -0.06 Total: -57.32 kcal Atomic # 14 Polarization: 47.77 SS G_CDS: 2.03 Total: 49.80 kcal Total: -85.30 6.24 -79.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448788069.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.778 kcal (2) G-P(sol) polarization free energy of solvation -85.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds