Wall clock time and date at job start Tue Mar 31 2020 05:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50697 * 120.00356 * 2 1 4 4 N 1.46499 * 109.46987 * 125.00057 * 3 2 1 5 5 C 1.46506 * 120.00055 * 270.00363 * 4 3 2 6 6 C 1.50697 * 109.46876 * 269.99991 * 5 4 3 7 7 H 1.08006 * 120.00477 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99886 * 180.02562 * 6 5 4 9 9 N 1.31504 * 119.99953 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99709 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47212 * 60.00153 * 10 8 6 12 12 H 1.48503 * 109.46599 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47266 * 299.99667 * 10 8 6 14 14 C 1.34775 * 119.99925 * 90.00443 * 4 3 2 15 15 O 1.21280 * 119.99930 * 180.02562 * 14 4 3 16 16 C 1.50697 * 119.99971 * 359.97438 * 14 4 3 17 17 O 1.42902 * 109.47205 * 180.02562 * 16 14 4 18 18 C 1.42898 * 114.00186 * 179.97438 * 17 16 14 19 19 C 1.52997 * 109.47319 * 180.02562 * 18 17 16 20 20 C 1.54267 * 110.03373 * 292.91285 * 19 18 17 21 21 C 1.54968 * 104.16137 * 217.13581 * 20 19 18 22 22 C 1.54884 * 102.77441 * 37.88396 * 21 20 19 23 23 C 1.53874 * 110.03593 * 175.69205 * 19 18 17 24 24 H 1.07997 * 120.00224 * 179.97438 * 1 2 3 25 25 H 1.08000 * 119.99821 * 359.97438 * 1 2 3 26 26 H 1.08004 * 119.99363 * 180.02562 * 2 1 3 27 27 H 1.09000 * 109.47134 * 5.00284 * 3 2 1 28 28 H 1.09000 * 109.47161 * 245.00348 * 3 2 1 29 29 H 1.08997 * 109.47087 * 30.00200 * 5 4 3 30 30 H 1.08998 * 109.46674 * 150.00089 * 5 4 3 31 31 H 0.97004 * 120.00013 * 180.02562 * 9 8 6 32 32 H 1.09001 * 109.47017 * 60.00358 * 16 14 4 33 33 H 1.08999 * 109.47472 * 300.00035 * 16 14 4 34 34 H 1.09002 * 109.47259 * 300.00293 * 18 17 16 35 35 H 1.09001 * 109.47074 * 60.00315 * 18 17 16 36 36 H 1.09004 * 110.01939 * 54.29674 * 19 18 17 37 37 H 1.09001 * 110.48609 * 335.77840 * 20 19 18 38 38 H 1.08999 * 110.49311 * 98.42344 * 20 19 18 39 39 H 1.08997 * 110.72048 * 279.57487 * 21 20 19 40 40 H 1.08993 * 110.92252 * 156.29196 * 21 20 19 41 41 H 1.09009 * 110.48779 * 203.40596 * 22 21 20 42 42 H 1.09001 * 110.59973 * 80.82109 * 22 21 20 43 43 H 1.09003 * 110.03243 * 238.56963 * 23 19 18 44 44 H 1.09004 * 110.03196 * 359.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9938 1.3317 1.1314 5 6 2.5589 1.8647 2.4249 6 6 2.8444 3.3434 2.4805 7 1 3.3034 3.8369 1.6366 8 6 2.5195 4.0663 3.6088 9 7 1.9610 3.4653 4.6366 10 14 2.8740 5.8990 3.6779 11 1 2.1382 6.5871 2.5868 12 1 2.4331 6.4393 4.9890 13 1 4.3320 6.1278 3.5128 14 6 4.2497 0.8660 0.9823 15 8 5.0197 0.8877 1.9191 16 6 4.6969 0.3172 -0.3480 17 8 6.0569 -0.1111 -0.2538 18 6 6.5815 -0.6517 -1.4681 19 6 8.0355 -1.0756 -1.2514 20 6 8.9169 0.1662 -1.0048 21 6 10.2485 -0.1649 -1.7250 22 6 9.7736 -0.9067 -2.9990 23 6 8.5802 -1.7579 -2.5185 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8499 -0.9354 -0.0004 27 1 1.3587 2.1316 0.0896 28 1 2.6213 1.4025 -0.9314 29 1 1.4888 1.6964 2.5460 30 1 3.0990 1.3600 3.2259 31 1 1.7322 3.9739 5.4302 32 1 4.6120 1.0937 -1.1084 33 1 4.0677 -0.5297 -0.6218 34 1 5.9911 -1.5186 -1.7649 35 1 6.5361 0.1044 -2.2519 36 1 8.1034 -1.7560 -0.4025 37 1 8.4575 1.0529 -1.4416 38 1 9.0849 0.3091 0.0626 39 1 10.8692 -0.8149 -1.1083 40 1 10.7866 0.7462 -1.9865 41 1 10.5670 -1.5462 -3.3862 42 1 9.4530 -0.1952 -3.7600 43 1 8.9130 -2.7691 -2.2844 44 1 7.8084 -1.7875 -3.2878 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456074187.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:18 Heat of formation + Delta-G solvation = -76.473884 kcal Electronic energy + Delta-G solvation = -22119.941231 eV Core-core repulsion = 18844.383776 eV Total energy + Delta-G solvation = -3275.557455 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.34300 -38.58140 -36.75246 -35.56547 -33.19042 -32.06954 -30.66188 -28.86117 -28.51702 -26.62886 -25.33015 -24.27054 -22.52579 -20.80376 -20.03290 -19.80140 -18.45124 -17.04015 -16.51202 -16.28187 -15.99369 -15.66654 -15.14356 -14.99301 -14.62555 -14.30794 -13.93737 -13.63958 -13.46065 -12.94926 -12.66551 -12.31408 -11.99460 -11.70551 -11.66287 -11.39828 -11.27660 -11.24163 -11.11664 -11.05855 -10.89905 -10.81774 -10.70490 -10.57013 -10.49699 -10.16960 -9.65445 -9.52968 -9.21303 -8.82575 -8.41201 -7.69182 -6.02213 -4.07071 2.41514 3.32922 3.34921 3.37996 3.42634 3.44307 4.25124 4.46369 4.49257 4.50064 4.70689 5.02434 5.11110 5.14392 5.27995 5.29186 5.31943 5.33821 5.34536 5.39780 5.46206 5.49825 5.51870 5.62461 5.65011 5.66326 5.74226 5.89743 5.96849 5.98747 6.14368 6.16415 6.24751 6.33956 6.76465 6.87595 7.02189 7.27425 7.46615 7.56358 7.94248 8.25046 8.39145 8.91884 9.10319 9.57802 11.05916 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.016065 B = 0.003892 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.481828 B = 7191.769321 C = 8494.003203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.170 4.170 3 C 0.135 3.865 4 N -0.594 5.594 5 C 0.249 3.751 6 C -0.528 4.528 7 H 0.057 0.943 8 C 0.062 3.938 9 N -0.894 5.894 10 Si 0.898 3.102 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.506 3.494 15 O -0.518 6.518 16 C 0.045 3.955 17 O -0.359 6.359 18 C 0.067 3.933 19 C -0.091 4.091 20 C -0.115 4.115 21 C -0.128 4.128 22 C -0.124 4.124 23 C -0.117 4.117 24 H 0.094 0.906 25 H 0.100 0.900 26 H 0.104 0.896 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.034 0.966 30 H 0.044 0.956 31 H 0.264 0.736 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.046 0.954 35 H 0.048 0.952 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.805 -9.817 -17.295 21.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.190 4.190 3 C 0.011 3.989 4 N -0.327 5.327 5 C 0.131 3.869 6 C -0.567 4.567 7 H 0.075 0.925 8 C -0.140 4.140 9 N -0.533 5.533 10 Si 0.726 3.274 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.201 1.201 14 C 0.291 3.709 15 O -0.393 6.393 16 C -0.035 4.035 17 O -0.277 6.277 18 C -0.010 4.010 19 C -0.110 4.110 20 C -0.152 4.152 21 C -0.165 4.165 22 C -0.162 4.162 23 C -0.155 4.155 24 H 0.112 0.888 25 H 0.118 0.882 26 H 0.122 0.878 27 H 0.108 0.892 28 H 0.090 0.910 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.267 -9.743 -16.399 20.412 hybrid contribution -0.214 0.940 -0.205 0.986 sum 7.053 -8.804 -16.604 20.074 Atomic orbital electron populations 1.23823 0.95813 1.01809 1.00378 1.23435 0.96467 0.98991 1.00084 1.20605 0.93250 0.95488 0.89576 1.48188 1.10062 1.60675 1.13769 1.19277 0.95380 0.93724 0.78548 1.21409 1.40658 0.93334 1.01301 0.92478 1.24930 0.95039 0.98778 0.95299 1.69923 1.41996 1.36261 1.05152 0.86560 0.78875 0.84864 0.77131 1.20260 1.21170 1.20138 1.19948 0.82617 0.79235 0.89069 1.90697 1.52244 1.54913 1.41457 1.22359 0.84556 0.99144 0.97441 1.88041 1.25292 1.81427 1.32968 1.22691 0.94325 0.96897 0.87124 1.21748 0.92834 0.97887 0.98497 1.22379 0.94405 0.97221 1.01211 1.22545 0.97522 0.99985 0.96460 1.22357 0.97413 0.98666 0.97768 1.22133 0.97704 0.99032 0.96639 0.88754 0.88218 0.87828 0.89220 0.90991 0.94829 0.93841 0.92658 0.91081 0.91200 0.93596 0.93384 0.90069 0.91462 0.91024 0.91609 0.91690 0.91863 0.91709 0.91508 0.91715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.29 14.32 29.01 0.42 -1.88 16 2 C -0.17 -2.39 9.74 -36.03 -0.35 -2.74 16 3 C 0.13 2.17 5.65 -5.20 -0.03 2.14 16 4 N -0.59 -12.76 2.44 -176.44 -0.43 -13.19 16 5 C 0.25 6.63 5.16 -5.19 -0.03 6.60 16 6 C -0.53 -15.16 9.39 -34.44 -0.32 -15.48 16 7 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 8 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 9 N -0.89 -26.87 13.29 55.43 0.74 -26.14 16 10 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 14 C 0.51 11.07 7.75 -10.99 -0.09 10.99 16 15 O -0.52 -14.02 16.08 -14.35 -0.23 -14.25 16 16 C 0.05 0.72 4.97 36.00 0.18 0.90 16 17 O -0.36 -6.09 9.71 -55.14 -0.54 -6.62 16 18 C 0.07 0.80 4.98 37.16 0.19 0.99 16 19 C -0.09 -1.01 3.19 -89.50 -0.29 -1.30 16 20 C -0.11 -1.33 6.22 -25.03 -0.16 -1.49 16 21 C -0.13 -1.17 6.91 -24.70 -0.17 -1.34 16 22 C -0.12 -1.00 6.83 -25.08 -0.17 -1.17 16 23 C -0.12 -1.00 6.46 -25.61 -0.17 -1.16 16 24 H 0.09 1.03 8.06 -52.49 -0.42 0.61 16 25 H 0.10 1.24 7.84 -52.49 -0.41 0.83 16 26 H 0.10 1.36 7.83 -52.48 -0.41 0.95 16 27 H 0.09 1.49 7.72 -51.93 -0.40 1.09 16 28 H 0.07 0.94 6.44 -51.93 -0.33 0.61 16 29 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 30 H 0.04 1.31 7.42 -51.93 -0.39 0.93 16 31 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 32 H 0.07 0.98 7.40 -51.93 -0.38 0.59 16 33 H 0.07 0.92 7.77 -51.93 -0.40 0.52 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.05 0.52 8.02 -51.93 -0.42 0.10 16 36 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.07 0.82 7.77 -51.93 -0.40 0.41 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.49 7.67 -51.93 -0.40 0.09 16 LS Contribution 362.67 15.07 5.47 5.47 Total: -1.00 -34.04 362.67 -8.82 -42.85 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -7.72 Total: -1.91 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: -1.08 Total: -3.26 kcal Atomic # 7 Polarization: -39.63 SS G_CDS: 0.31 Total: -39.33 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -0.77 Total: -20.87 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.04 -8.82 -42.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456074187.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.619 kcal (2) G-P(sol) polarization free energy of solvation -34.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds