Wall clock time and date at job start Tue Mar 31 2020 05:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46768 * 2 1 4 4 C 1.50697 * 109.46540 * 240.00470 * 2 1 3 5 5 H 1.08003 * 120.00101 * 239.99275 * 4 2 1 6 6 C 1.37877 * 120.00084 * 60.00285 * 4 2 1 7 7 N 1.31511 * 120.00012 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99982 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46942 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47436 * 119.99480 * 8 6 4 11 11 H 1.48498 * 109.46895 * 239.99645 * 8 6 4 12 12 C 1.52998 * 109.47318 * 120.00389 * 2 1 3 13 13 N 1.46497 * 109.46963 * 300.00000 * 12 2 1 14 14 C 1.34783 * 119.99712 * 180.02562 * 13 12 2 15 15 O 1.21283 * 119.99962 * 359.97438 * 14 13 12 16 16 C 1.50698 * 119.99817 * 180.02562 * 14 13 12 17 17 C 1.52998 * 109.47068 * 179.97438 * 16 14 13 18 18 C 1.53001 * 109.47244 * 179.97438 * 17 16 14 19 19 C 1.50699 * 109.47010 * 179.97438 * 18 17 16 20 20 O 1.20754 * 120.00328 * 0.02562 * 19 18 17 21 21 C 1.50706 * 120.00078 * 179.97438 * 19 18 17 22 22 C 1.52995 * 117.50181 * 223.74883 * 21 19 18 23 23 C 1.52993 * 117.50081 * 155.08648 * 21 19 18 24 24 H 1.09006 * 109.46806 * 299.99224 * 1 2 3 25 25 H 1.08997 * 109.47739 * 59.99196 * 1 2 3 26 26 H 1.08995 * 109.47122 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46712 * 179.97438 * 3 2 1 28 28 H 1.08988 * 109.47590 * 300.00584 * 3 2 1 29 29 H 1.09006 * 109.46824 * 60.00787 * 3 2 1 30 30 H 0.97009 * 119.99711 * 180.02562 * 7 6 4 31 31 H 1.09000 * 109.46827 * 179.97438 * 12 2 1 32 32 H 1.09007 * 109.46971 * 59.99909 * 12 2 1 33 33 H 0.96998 * 120.00429 * 0.02562 * 13 12 2 34 34 H 1.09000 * 109.47467 * 60.00016 * 16 14 13 35 35 H 1.08998 * 109.47274 * 299.99820 * 16 14 13 36 36 H 1.09006 * 109.47188 * 59.99602 * 17 16 14 37 37 H 1.08998 * 109.47063 * 300.00117 * 17 16 14 38 38 H 1.09000 * 109.47268 * 60.00198 * 18 17 16 39 39 H 1.08998 * 109.47297 * 300.00110 * 18 17 16 40 40 H 1.08998 * 115.54512 * 9.41645 * 21 19 18 41 41 H 1.09000 * 117.49859 * 0.02562 * 22 21 19 42 42 H 1.08999 * 117.49900 * 145.01759 * 22 21 19 43 43 H 1.08998 * 117.50372 * 214.98309 * 23 21 19 44 44 H 1.09006 * 117.50059 * 359.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1316 6 6 1.6991 -0.2391 -2.4827 7 7 0.9427 0.8299 -2.6033 8 14 2.3222 -1.1192 -4.0081 9 1 3.1481 -2.2855 -3.6040 10 1 1.1676 -1.5863 -4.8166 11 1 3.1469 -0.1854 -4.8162 12 6 2.0401 -0.7213 1.2492 13 7 1.5518 -0.0308 2.4453 14 6 1.8779 -0.4911 3.6695 15 8 2.5752 -1.4772 3.7806 16 6 1.3751 0.2189 4.9000 17 6 1.8852 -0.5023 6.1491 18 6 1.3753 0.2188 7.3984 19 6 1.8773 -0.4920 8.6288 20 8 2.5716 -1.4737 8.5179 21 6 1.5137 0.0231 9.9977 22 6 2.6235 0.0784 11.0494 23 6 1.5212 -0.9784 11.1542 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5139 -0.8898 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9564 -0.8898 29 1 1.6767 1.9562 0.8901 30 1 0.7081 1.1612 -3.4843 31 1 3.1301 -0.7217 1.2489 32 1 1.6767 -1.7490 1.2491 33 1 0.9938 0.7576 2.3565 34 1 0.2851 0.2181 4.9001 35 1 1.7376 1.2468 4.9000 36 1 2.9753 -0.5019 6.1492 37 1 1.5224 -1.5301 6.1489 38 1 0.2853 0.2188 7.3986 39 1 1.7386 1.2465 7.3985 40 1 0.7606 0.8107 10.0188 41 1 3.6167 -0.2573 10.7512 42 1 2.6002 0.9023 11.7627 43 1 0.7732 -0.8495 11.9365 44 1 1.7886 -2.0100 10.9251 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458043068.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:24 Heat of formation + Delta-G solvation = -75.240703 kcal Electronic energy + Delta-G solvation = -21500.637001 eV Core-core repulsion = 18225.133021 eV Total energy + Delta-G solvation = -3275.503980 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.19774 -39.23834 -36.57139 -36.34243 -34.26027 -33.23563 -30.93059 -29.27450 -25.91316 -25.72764 -25.27117 -24.19367 -22.85934 -21.63556 -19.92541 -19.49833 -18.75470 -17.20749 -16.62348 -16.09355 -15.76883 -15.41195 -15.08929 -14.90924 -14.69924 -14.37355 -13.71282 -13.36054 -12.96615 -12.85648 -12.78101 -12.24731 -12.05343 -12.00535 -11.90397 -11.47760 -11.35637 -11.19015 -11.05472 -10.92357 -10.87186 -10.79273 -10.65758 -10.38560 -10.20162 -9.83484 -9.63280 -9.50380 -9.18423 -8.77167 -8.44012 -8.28240 -6.02149 -4.11863 1.62999 3.11740 3.27310 3.35858 3.40623 3.44170 3.50762 3.88372 4.35841 4.40712 4.48939 4.64196 4.72992 4.90717 4.92767 5.13120 5.18277 5.24692 5.34310 5.37559 5.43281 5.52000 5.61992 5.68111 5.73021 6.07948 6.25990 6.33031 6.34920 6.51683 6.80392 6.82196 6.94453 7.02258 7.07092 7.32310 7.36124 7.55757 7.69891 8.01106 8.08803 8.17666 8.39238 8.76624 8.89501 9.53952 10.99278 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.054397 B = 0.002422 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.613164 B =11559.768011 C =11798.625761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.055 3.945 3 C -0.130 4.130 4 C -0.504 4.504 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.131 3.869 13 N -0.719 5.719 14 C 0.501 3.499 15 O -0.552 6.552 16 C -0.142 4.142 17 C -0.095 4.095 18 C -0.165 4.165 19 C 0.381 3.619 20 O -0.449 6.449 21 C -0.224 4.224 22 C -0.151 4.151 23 C -0.154 4.154 24 H 0.006 0.994 25 H 0.085 0.915 26 H 0.026 0.974 27 H 0.026 0.974 28 H 0.085 0.915 29 H 0.006 0.994 30 H 0.259 0.741 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.397 0.603 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.125 0.875 41 H 0.101 0.899 42 H 0.104 0.896 43 H 0.103 0.897 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.897 4.377 22.580 23.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.054 3.946 3 C -0.188 4.188 4 C -0.543 4.543 5 H 0.076 0.924 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.009 3.991 13 N -0.370 5.370 14 C 0.286 3.714 15 O -0.430 6.430 16 C -0.182 4.182 17 C -0.133 4.133 18 C -0.203 4.203 19 C 0.256 3.744 20 O -0.322 6.322 21 C -0.243 4.243 22 C -0.189 4.189 23 C -0.191 4.191 24 H 0.025 0.975 25 H 0.104 0.896 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.104 0.896 29 H 0.025 0.975 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.232 0.768 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.143 0.857 41 H 0.119 0.881 42 H 0.122 0.878 43 H 0.121 0.879 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.097 3.246 22.418 22.749 hybrid contribution -0.142 0.177 -0.968 0.994 sum -2.239 3.423 21.451 21.837 Atomic orbital electron populations 1.21827 0.97768 0.99158 1.00057 1.18367 0.92805 0.92775 0.90662 1.21825 0.98569 0.98356 1.00057 1.21034 1.31298 1.12037 0.89894 0.92405 1.24889 0.94903 0.94953 0.98879 1.69815 1.36783 1.22825 1.23087 0.86516 0.78640 0.79763 0.82976 1.19756 1.21067 1.21072 1.21692 0.98097 0.95777 0.83570 1.46340 1.52673 1.31817 1.06132 1.20583 0.80868 0.84945 0.84985 1.90684 1.38568 1.26768 1.87029 1.21674 1.02398 1.00704 0.93392 1.21134 1.02208 0.99630 0.90370 1.22090 1.03018 1.01369 0.93792 1.23817 0.76825 0.83084 0.90657 1.90426 1.29482 1.23358 1.88955 1.22920 1.05080 1.05118 0.91149 1.22949 0.94535 1.01802 0.99567 1.22969 1.01622 0.96294 0.98236 0.97492 0.89606 0.95474 0.95475 0.89609 0.97488 0.93088 0.92834 0.92839 0.76780 0.89151 0.89150 0.90667 0.90648 0.88259 0.88220 0.85715 0.88056 0.87796 0.87892 0.87791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 2 C 0.05 1.27 0.50 -155.66 -0.08 1.19 16 3 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 4 C -0.50 -13.30 8.01 -34.44 -0.28 -13.57 16 5 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 6 C 0.06 1.71 5.15 -17.82 -0.09 1.62 16 7 N -0.89 -23.63 9.35 55.43 0.52 -23.11 16 8 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 9 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 C 0.13 2.83 4.50 -4.04 -0.02 2.81 16 13 N -0.72 -12.71 4.96 -60.29 -0.30 -13.01 16 14 C 0.50 8.59 7.83 -10.98 -0.09 8.51 16 15 O -0.55 -11.86 15.98 5.56 0.09 -11.77 16 16 C -0.14 -1.63 5.70 -27.88 -0.16 -1.79 16 17 C -0.10 -1.15 3.79 -26.73 -0.10 -1.25 16 18 C -0.17 -1.33 5.64 -27.88 -0.16 -1.48 16 19 C 0.38 3.73 6.92 -29.03 -0.20 3.53 16 20 O -0.45 -6.24 16.05 6.00 0.10 -6.15 16 21 C -0.22 -1.57 6.12 -91.77 -0.56 -2.13 16 22 C -0.15 -0.99 10.14 -26.70 -0.27 -1.26 16 23 C -0.15 -1.05 10.05 -26.70 -0.27 -1.32 16 24 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 25 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.09 2.13 6.07 -51.94 -0.32 1.82 16 29 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 30 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 31 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.40 6.20 6.16 -40.82 -0.25 5.95 16 34 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 1.06 8.06 -51.93 -0.42 0.64 16 37 H 0.07 1.06 8.06 -51.93 -0.42 0.65 16 38 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.12 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.10 0.86 7.89 -51.93 -0.41 0.45 16 LS Contribution 357.51 15.07 5.39 5.39 Total: -1.00 -31.24 357.51 -8.35 -39.59 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -7.46 Total: 3.64 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: -1.67 Total: -10.41 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: 0.22 Total: -36.13 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: 0.19 Total: -17.92 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.24 -8.35 -39.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458043068.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.650 kcal (2) G-P(sol) polarization free energy of solvation -31.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds