Wall clock time and date at job start Tue Mar 31 2020 05:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46768 * 2 1 4 4 C 1.50697 * 109.46540 * 240.00470 * 2 1 3 5 5 H 1.08003 * 120.00101 * 239.99275 * 4 2 1 6 6 C 1.37877 * 120.00084 * 60.00285 * 4 2 1 7 7 N 1.31511 * 120.00012 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99982 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46942 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47436 * 119.99480 * 8 6 4 11 11 H 1.48498 * 109.46895 * 239.99645 * 8 6 4 12 12 C 1.52998 * 109.47318 * 120.00389 * 2 1 3 13 13 N 1.46497 * 109.46963 * 300.00000 * 12 2 1 14 14 C 1.34783 * 119.99712 * 180.02562 * 13 12 2 15 15 O 1.21283 * 119.99962 * 359.97438 * 14 13 12 16 16 C 1.50698 * 119.99817 * 180.02562 * 14 13 12 17 17 C 1.52998 * 109.47068 * 179.97438 * 16 14 13 18 18 C 1.53001 * 109.47244 * 179.97438 * 17 16 14 19 19 C 1.50699 * 109.47010 * 179.97438 * 18 17 16 20 20 O 1.20754 * 120.00328 * 0.02562 * 19 18 17 21 21 C 1.50706 * 120.00078 * 179.97438 * 19 18 17 22 22 C 1.52995 * 117.50181 * 223.74883 * 21 19 18 23 23 C 1.52993 * 117.50081 * 155.08648 * 21 19 18 24 24 H 1.09006 * 109.46806 * 299.99224 * 1 2 3 25 25 H 1.08997 * 109.47739 * 59.99196 * 1 2 3 26 26 H 1.08995 * 109.47122 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46712 * 179.97438 * 3 2 1 28 28 H 1.08988 * 109.47590 * 300.00584 * 3 2 1 29 29 H 1.09006 * 109.46824 * 60.00787 * 3 2 1 30 30 H 0.97009 * 119.99711 * 180.02562 * 7 6 4 31 31 H 1.09000 * 109.46827 * 179.97438 * 12 2 1 32 32 H 1.09007 * 109.46971 * 59.99909 * 12 2 1 33 33 H 0.96998 * 120.00429 * 0.02562 * 13 12 2 34 34 H 1.09000 * 109.47467 * 60.00016 * 16 14 13 35 35 H 1.08998 * 109.47274 * 299.99820 * 16 14 13 36 36 H 1.09006 * 109.47188 * 59.99602 * 17 16 14 37 37 H 1.08998 * 109.47063 * 300.00117 * 17 16 14 38 38 H 1.09000 * 109.47268 * 60.00198 * 18 17 16 39 39 H 1.08998 * 109.47297 * 300.00110 * 18 17 16 40 40 H 1.08998 * 115.54512 * 9.41645 * 21 19 18 41 41 H 1.09000 * 117.49859 * 0.02562 * 22 21 19 42 42 H 1.08999 * 117.49900 * 145.01759 * 22 21 19 43 43 H 1.08998 * 117.50372 * 214.98309 * 23 21 19 44 44 H 1.09006 * 117.50059 * 359.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1316 6 6 1.6991 -0.2391 -2.4827 7 7 0.9427 0.8299 -2.6033 8 14 2.3222 -1.1192 -4.0081 9 1 3.1481 -2.2855 -3.6040 10 1 1.1676 -1.5863 -4.8166 11 1 3.1469 -0.1854 -4.8162 12 6 2.0401 -0.7213 1.2492 13 7 1.5518 -0.0308 2.4453 14 6 1.8779 -0.4911 3.6695 15 8 2.5752 -1.4772 3.7806 16 6 1.3751 0.2189 4.9000 17 6 1.8852 -0.5023 6.1491 18 6 1.3753 0.2188 7.3984 19 6 1.8773 -0.4920 8.6288 20 8 2.5716 -1.4737 8.5179 21 6 1.5137 0.0231 9.9977 22 6 2.6235 0.0784 11.0494 23 6 1.5212 -0.9784 11.1542 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5139 -0.8898 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9564 -0.8898 29 1 1.6767 1.9562 0.8901 30 1 0.7081 1.1612 -3.4843 31 1 3.1301 -0.7217 1.2489 32 1 1.6767 -1.7490 1.2491 33 1 0.9938 0.7576 2.3565 34 1 0.2851 0.2181 4.9001 35 1 1.7376 1.2468 4.9000 36 1 2.9753 -0.5019 6.1492 37 1 1.5224 -1.5301 6.1489 38 1 0.2853 0.2188 7.3986 39 1 1.7386 1.2465 7.3985 40 1 0.7606 0.8107 10.0188 41 1 3.6167 -0.2573 10.7512 42 1 2.6002 0.9023 11.7627 43 1 0.7732 -0.8495 11.9365 44 1 1.7886 -2.0100 10.9251 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458043068.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:23 Heat of formation + Delta-G solvation = -93.887240 kcal Electronic energy + Delta-G solvation = -21501.445576 eV Core-core repulsion = 18225.133021 eV Total energy + Delta-G solvation = -3276.312555 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.03465 -40.61304 -38.18184 -37.08470 -35.22990 -34.97327 -32.75008 -30.23264 -27.55346 -27.50744 -26.95985 -25.34557 -23.35282 -22.57926 -21.21587 -20.57929 -20.21135 -18.41998 -17.74939 -17.42230 -17.04535 -16.67616 -16.40395 -16.10100 -16.01170 -15.31548 -14.98933 -14.87978 -14.56460 -14.20308 -14.00104 -13.62270 -13.21426 -13.11092 -12.99117 -12.81593 -12.64324 -12.57547 -12.46166 -12.36539 -12.24408 -12.14661 -11.71062 -11.54501 -11.48288 -11.44038 -11.27595 -10.86870 -10.68640 -10.45840 -10.40539 -9.91040 -8.03466 -6.18764 0.92565 1.39711 1.43926 1.53383 1.76391 2.34663 2.50494 2.92483 3.00862 3.19804 3.77336 3.86330 3.97527 4.07356 4.11185 4.16253 4.26084 4.44874 4.50019 4.67602 4.69139 4.71629 4.71761 4.77122 4.85057 4.98771 5.01997 5.06707 5.10856 5.13423 5.17882 5.18828 5.20597 5.36526 5.41002 5.63316 5.66868 5.68080 6.16340 6.22152 6.43726 6.63106 6.74144 6.85355 7.40879 7.48760 8.95424 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.054397 B = 0.002422 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.613164 B =11559.768011 C =11798.625761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.050 3.950 3 C -0.120 4.120 4 C -0.529 4.529 5 H 0.040 0.960 6 C 0.028 3.972 7 N -0.897 5.897 8 Si 0.944 3.056 9 H -0.278 1.278 10 H -0.280 1.280 11 H -0.280 1.280 12 C 0.147 3.853 13 N -0.711 5.711 14 C 0.494 3.506 15 O -0.603 6.603 16 C -0.127 4.127 17 C -0.094 4.094 18 C -0.156 4.156 19 C 0.375 3.625 20 O -0.506 6.506 21 C -0.222 4.222 22 C -0.151 4.151 23 C -0.161 4.161 24 H 0.042 0.958 25 H 0.063 0.937 26 H 0.015 0.985 27 H 0.015 0.985 28 H 0.063 0.937 29 H 0.042 0.958 30 H 0.261 0.739 31 H 0.032 0.968 32 H 0.032 0.968 33 H 0.411 0.589 34 H 0.127 0.873 35 H 0.127 0.873 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.133 0.867 39 H 0.133 0.867 40 H 0.161 0.839 41 H 0.080 0.920 42 H 0.131 0.869 43 H 0.128 0.872 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.676 6.882 24.234 25.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.049 3.951 3 C -0.178 4.178 4 C -0.567 4.567 5 H 0.058 0.942 6 C -0.172 4.172 7 N -0.536 5.536 8 Si 0.771 3.229 9 H -0.203 1.203 10 H -0.206 1.206 11 H -0.206 1.206 12 C 0.022 3.978 13 N -0.363 5.363 14 C 0.283 3.717 15 O -0.485 6.485 16 C -0.166 4.166 17 C -0.132 4.132 18 C -0.193 4.193 19 C 0.254 3.746 20 O -0.383 6.383 21 C -0.240 4.240 22 C -0.188 4.188 23 C -0.198 4.198 24 H 0.060 0.940 25 H 0.082 0.918 26 H 0.035 0.965 27 H 0.035 0.965 28 H 0.082 0.918 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.249 0.751 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.151 0.849 39 H 0.151 0.849 40 H 0.178 0.822 41 H 0.099 0.901 42 H 0.149 0.851 43 H 0.146 0.854 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.907 5.796 24.084 25.078 hybrid contribution 0.438 -0.635 -1.462 1.653 sum -3.470 5.160 22.623 23.462 Atomic orbital electron populations 1.21667 0.96887 0.98616 1.00633 1.18373 0.93437 0.93132 0.90144 1.21665 0.97807 0.97696 1.00633 1.21301 1.31615 1.12057 0.91762 0.94159 1.25441 0.95204 0.95653 1.00901 1.69904 1.36938 1.23211 1.23554 0.85723 0.78159 0.78693 0.80315 1.20311 1.20591 1.20600 1.21215 0.96710 0.94992 0.84850 1.46163 1.52828 1.32018 1.05272 1.21696 0.79602 0.84325 0.86125 1.90672 1.40832 1.29283 1.87718 1.21718 1.04359 1.01253 0.89271 1.21045 1.00296 0.98829 0.93061 1.22121 1.04855 1.01886 0.90442 1.24521 0.75253 0.82027 0.92771 1.90426 1.32169 1.25917 1.89819 1.23038 1.05948 1.05763 0.89278 1.23021 0.93444 1.02442 0.99889 1.23025 1.02556 0.95144 0.99037 0.93957 0.91839 0.96538 0.96538 0.91842 0.93955 0.92981 0.94942 0.94946 0.75089 0.85511 0.85517 0.93894 0.93868 0.84874 0.84908 0.82168 0.90142 0.85108 0.85398 0.90284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.28 8.08 71.98 0.58 -4.70 16 2 C 0.05 2.31 0.50 -52.93 -0.03 2.28 16 3 C -0.12 -5.28 8.08 71.98 0.58 -4.70 16 4 C -0.53 -28.39 8.01 25.60 0.21 -28.19 16 5 H 0.04 2.24 7.74 -2.91 -0.02 2.22 16 6 C 0.03 1.48 5.15 84.66 0.44 1.91 16 7 N -0.90 -47.72 9.35 21.45 0.20 -47.52 16 8 Si 0.94 43.07 29.54 68.60 2.03 45.09 16 9 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 11 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 12 C 0.15 6.39 4.50 86.38 0.39 6.77 16 13 N -0.71 -23.97 4.96 -463.05 -2.30 -26.27 16 14 C 0.49 16.39 7.83 87.66 0.69 17.07 16 15 O -0.60 -26.62 15.98 -3.04 -0.05 -26.67 16 16 C -0.13 -2.48 5.70 29.85 0.17 -2.31 16 17 C -0.09 -2.15 3.79 30.59 0.12 -2.03 16 18 C -0.16 -1.97 5.64 29.85 0.17 -1.80 16 19 C 0.37 6.87 6.92 29.10 0.20 7.07 16 20 O -0.51 -14.72 16.05 -1.43 -0.02 -14.74 16 21 C -0.22 -2.51 6.12 -11.54 -0.07 -2.58 16 22 C -0.15 -1.72 10.14 30.62 0.31 -1.41 16 23 C -0.16 -1.96 10.05 30.62 0.31 -1.65 16 24 H 0.04 1.51 6.86 -2.38 -0.02 1.49 16 25 H 0.06 3.10 6.07 -2.39 -0.01 3.08 16 26 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.06 3.10 6.07 -2.39 -0.01 3.08 16 29 H 0.04 1.51 6.86 -2.38 -0.02 1.49 16 30 H 0.26 13.28 8.31 -92.70 -0.77 12.51 16 31 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.03 1.53 8.14 -2.38 -0.02 1.51 16 33 H 0.41 11.39 6.16 -92.71 -0.57 10.82 16 34 H 0.13 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.13 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.04 1.24 8.06 -2.38 -0.02 1.22 16 37 H 0.04 1.24 8.06 -2.39 -0.02 1.22 16 38 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.16 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.13 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.08 1.36 7.89 -2.38 -0.02 1.34 16 Total: -1.00 -72.97 357.51 4.32 -68.65 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: 0.40 Total: 15.70 kcal Atomic # 6 Polarization: -18.30 SS G_CDS: 4.06 Total: -14.25 kcal Atomic # 7 Polarization: -71.69 SS G_CDS: -2.10 Total: -73.78 kcal Atomic # 8 Polarization: -41.34 SS G_CDS: -0.07 Total: -41.41 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.09 kcal Total: -72.97 4.32 -68.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458043068.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.239 kcal (2) G-P(sol) polarization free energy of solvation -72.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds