Wall clock time and date at job start Tue Mar 31 2020 05:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50697 * 120.00607 * 2 1 4 4 C 1.50702 * 119.99658 * 179.97438 * 2 1 3 5 5 H 1.09000 * 110.33221 * 232.34519 * 4 2 1 6 6 O 1.44425 * 110.46794 * 354.66197 * 4 2 1 7 7 C 1.44426 * 105.27915 * 159.38606 * 6 4 2 8 8 C 1.54480 * 104.80225 * 319.48834 * 7 6 4 9 9 C 1.54484 * 110.36911 * 110.09418 * 4 2 1 10 10 H 1.08990 * 110.50943 * 98.43681 * 9 4 2 11 11 C 1.50702 * 110.51136 * 335.72316 * 9 4 2 12 12 O 1.21280 * 120.00090 * 300.01291 * 11 9 4 13 13 N 1.34773 * 119.99858 * 120.00763 * 11 9 4 14 14 C 1.46494 * 120.00322 * 179.97438 * 13 11 9 15 15 C 1.52996 * 109.47355 * 180.02562 * 14 13 11 16 16 C 1.52998 * 109.47363 * 300.00455 * 15 14 13 17 17 C 1.53006 * 109.47265 * 60.00502 * 15 14 13 18 18 C 1.50706 * 109.47227 * 180.02562 * 15 14 13 19 19 H 1.08001 * 119.99901 * 359.97438 * 18 15 14 20 20 C 1.37875 * 119.99956 * 180.02562 * 18 15 14 21 21 N 1.31511 * 120.00183 * 0.02562 * 20 18 15 22 22 Si 1.86797 * 119.99778 * 179.97438 * 20 18 15 23 23 H 1.48506 * 109.47536 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47055 * 120.00300 * 22 20 18 25 25 H 1.48500 * 109.47680 * 239.99997 * 22 20 18 26 26 H 1.08006 * 119.99414 * 0.02562 * 1 2 3 27 27 H 1.07998 * 120.00388 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46427 * 274.33551 * 3 2 1 29 29 H 1.09006 * 109.46863 * 34.32726 * 3 2 1 30 30 H 1.08992 * 109.47373 * 154.33110 * 3 2 1 31 31 H 1.08992 * 110.37295 * 200.65434 * 7 6 4 32 32 H 1.09001 * 110.36942 * 78.31432 * 7 6 4 33 33 H 1.09002 * 110.50906 * 265.33219 * 8 7 6 34 34 H 1.09002 * 110.51177 * 142.61847 * 8 7 6 35 35 H 0.97008 * 120.00091 * 0.02562 * 13 11 9 36 36 H 1.09000 * 109.47018 * 300.00460 * 14 13 11 37 37 H 1.09007 * 109.46964 * 60.00236 * 14 13 11 38 38 H 1.08995 * 109.47370 * 59.99959 * 16 15 14 39 39 H 1.09006 * 109.46937 * 180.02562 * 16 15 14 40 40 H 1.09007 * 109.46893 * 299.99736 * 16 15 14 41 41 H 1.09000 * 109.47146 * 59.99528 * 17 15 14 42 42 H 1.08996 * 109.47396 * 180.02562 * 17 15 14 43 43 H 1.09007 * 109.46547 * 299.99925 * 17 15 14 44 44 H 0.97005 * 120.00188 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0634 -1.3052 0.0006 5 1 2.7935 -1.3206 0.8098 6 8 1.1491 -2.4160 0.1270 7 6 1.8727 -3.5629 -0.3702 8 6 2.6348 -3.0422 -1.6089 9 6 2.7632 -1.5227 -1.3594 10 1 3.8121 -1.2327 -1.2998 11 6 2.0606 -0.7482 -2.4446 12 8 0.8944 -0.9719 -2.6913 13 7 2.7282 0.1930 -3.1409 14 6 2.0454 0.9455 -4.1962 15 6 3.0211 1.9424 -4.8246 16 6 3.5233 2.9103 -3.7513 17 6 4.2080 1.1856 -5.4243 18 6 2.3186 2.7170 -5.9098 19 1 1.2801 2.5177 -6.1296 20 6 3.0019 3.6792 -6.6227 21 7 4.2668 3.9207 -6.3561 22 14 2.1312 4.6387 -7.9683 23 1 0.7223 4.1804 -8.0708 24 1 2.1575 6.0867 -7.6399 25 1 2.8213 4.4124 -9.2636 26 1 -0.5399 0.9354 -0.0004 27 1 -0.5401 -0.9352 0.0004 28 1 2.1780 1.6584 -1.0248 29 1 1.5103 2.0441 0.5796 30 1 3.0474 1.1565 0.4451 31 1 1.1797 -4.3541 -0.6559 32 1 2.5736 -3.9246 0.3822 33 1 2.0631 -3.2331 -2.5171 34 1 3.6204 -3.5033 -1.6727 35 1 3.6610 0.3717 -2.9438 36 1 1.6881 0.2560 -4.9611 37 1 1.1996 1.4844 -3.7691 38 1 4.0313 2.3504 -2.9661 39 1 4.2181 3.6208 -4.1992 40 1 2.6777 3.4495 -3.3241 41 1 3.8503 0.4960 -6.1889 42 1 4.9033 1.8958 -5.8716 43 1 4.7160 0.6256 -4.6391 44 1 4.7474 4.5980 -6.8575 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458047510.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:22 Heat of formation + Delta-G solvation = -71.938183 kcal Electronic energy + Delta-G solvation = -23564.541354 eV Core-core repulsion = 20289.180582 eV Total energy + Delta-G solvation = -3275.360772 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.49258 -38.26339 -36.23912 -34.89332 -33.23894 -32.27255 -30.76407 -28.74536 -27.00555 -25.75634 -25.73819 -25.07289 -23.43616 -21.95349 -19.98145 -18.81761 -18.45845 -17.14363 -16.31332 -15.93737 -15.62765 -15.35208 -14.80433 -14.75181 -14.39051 -13.74676 -13.42048 -13.20920 -12.93902 -12.89478 -12.65445 -12.22611 -12.11121 -11.87461 -11.66917 -11.39412 -11.27080 -11.20354 -11.17182 -10.88659 -10.77928 -10.66416 -10.39558 -10.20642 -9.89149 -9.64263 -9.46565 -9.16497 -8.82576 -8.76555 -8.42715 -8.24676 -6.03139 -4.12905 2.43485 3.06632 3.26344 3.35114 3.39752 3.71011 3.81558 4.39468 4.44908 4.76324 4.87179 4.99083 5.09758 5.19487 5.23856 5.29155 5.37025 5.52423 5.61498 5.65439 5.69916 5.85571 5.95108 6.15555 6.22931 6.25407 6.34160 6.50448 6.63755 6.79553 6.80875 6.84408 6.93213 7.00895 7.07238 7.14913 7.35238 7.54506 7.68801 7.99960 8.08437 8.18024 8.38326 8.78835 8.88728 9.53080 10.98223 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.028666 B = 0.004339 C = 0.004192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.542726 B = 6450.824755 C = 6678.472415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.151 4.151 3 C -0.116 4.116 4 C 0.135 3.865 5 H 0.080 0.920 6 O -0.359 6.359 7 C 0.049 3.951 8 C -0.139 4.139 9 C -0.139 4.139 10 H 0.096 0.904 11 C 0.519 3.481 12 O -0.536 6.536 13 N -0.717 5.717 14 C 0.134 3.866 15 C 0.056 3.944 16 C -0.129 4.129 17 C -0.130 4.130 18 C -0.504 4.504 19 H 0.057 0.943 20 C 0.066 3.934 21 N -0.886 5.886 22 Si 0.892 3.108 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.285 1.285 26 H 0.093 0.907 27 H 0.107 0.893 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.092 0.908 32 H 0.059 0.941 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.395 0.605 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.006 0.994 39 H 0.085 0.915 40 H 0.026 0.974 41 H 0.026 0.974 42 H 0.085 0.915 43 H 0.005 0.995 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.136 -10.038 12.499 16.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.151 4.151 3 C -0.173 4.173 4 C 0.077 3.923 5 H 0.098 0.902 6 O -0.278 6.278 7 C -0.028 4.028 8 C -0.177 4.177 9 C -0.161 4.161 10 H 0.115 0.885 11 C 0.303 3.697 12 O -0.413 6.413 13 N -0.368 5.368 14 C 0.012 3.988 15 C 0.055 3.945 16 C -0.187 4.187 17 C -0.188 4.188 18 C -0.543 4.543 19 H 0.075 0.925 20 C -0.135 4.135 21 N -0.525 5.525 22 Si 0.720 3.280 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.211 1.211 26 H 0.112 0.888 27 H 0.125 0.875 28 H 0.095 0.905 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.111 0.889 32 H 0.077 0.923 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.230 0.770 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.025 0.975 39 H 0.103 0.897 40 H 0.045 0.955 41 H 0.045 0.955 42 H 0.104 0.896 43 H 0.024 0.976 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.211 -10.051 12.312 15.895 hybrid contribution 0.331 0.633 -0.848 1.109 sum 0.543 -9.418 11.464 14.847 Atomic orbital electron populations 1.23609 0.95335 1.01870 0.97131 1.21348 0.95867 0.93572 1.04334 1.20813 0.99471 0.93851 1.03164 1.21579 0.90270 0.86443 0.93976 0.90239 1.89141 1.37349 1.16739 1.84523 1.23354 0.95573 0.89858 0.94010 1.22899 1.01607 0.92651 1.00536 1.22736 1.00956 0.96667 0.95713 0.88523 1.19966 0.87197 0.80368 0.82141 1.90677 1.16188 1.66848 1.67604 1.46365 1.15050 1.38101 1.37285 1.21658 0.95993 0.93503 0.87650 1.18354 0.91811 0.90956 0.93365 1.21819 1.00339 1.00380 0.96160 1.21825 1.00060 0.98980 0.97924 1.21027 0.97230 1.19012 1.17016 0.92462 1.24871 0.94841 0.96745 0.97036 1.69810 1.08603 1.33101 1.40961 0.86535 0.79938 0.79756 0.81777 1.19770 1.21065 1.21073 0.88847 0.87513 0.90540 0.91676 0.92276 0.88940 0.92291 0.89677 0.89977 0.76993 0.93000 0.92890 0.97516 0.89671 0.95488 0.95515 0.89635 0.97558 0.93093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 12.95 29.01 0.38 -1.79 16 2 C -0.15 -2.15 3.72 -101.07 -0.38 -2.53 16 3 C -0.12 -1.50 9.73 36.00 0.35 -1.15 16 4 C 0.14 1.76 3.47 -27.10 -0.09 1.66 16 5 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 6 O -0.36 -5.04 9.83 -35.23 -0.35 -5.38 16 7 C 0.05 0.52 7.63 37.93 0.29 0.81 16 8 C -0.14 -1.56 6.64 -25.16 -0.17 -1.72 16 9 C -0.14 -1.78 3.39 -90.20 -0.31 -2.09 16 10 H 0.10 1.00 7.97 -51.93 -0.41 0.59 16 11 C 0.52 8.80 4.71 -10.99 -0.05 8.75 16 12 O -0.54 -11.11 15.54 5.56 0.09 -11.03 16 13 N -0.72 -12.42 4.50 -60.30 -0.27 -12.69 16 14 C 0.13 2.82 4.50 -4.05 -0.02 2.81 16 15 C 0.06 1.27 0.50 -155.66 -0.08 1.19 16 16 C -0.13 -2.84 8.08 37.16 0.30 -2.54 16 17 C -0.13 -2.89 8.08 37.16 0.30 -2.59 16 18 C -0.50 -13.12 8.01 -34.44 -0.28 -13.39 16 19 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 20 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 21 N -0.89 -23.38 9.35 55.43 0.52 -22.87 16 22 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 23 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 H 0.09 1.32 8.05 -52.48 -0.42 0.90 16 27 H 0.11 1.71 6.91 -52.49 -0.36 1.35 16 28 H 0.08 1.15 7.39 -51.93 -0.38 0.76 16 29 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 30 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 31 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.08 1.12 7.54 -51.93 -0.39 0.73 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.40 6.19 6.04 -40.82 -0.25 5.94 16 36 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.05 1.19 8.14 -51.92 -0.42 0.76 16 38 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 39 H 0.08 2.09 6.07 -51.93 -0.32 1.77 16 40 H 0.03 0.59 8.14 -51.92 -0.42 0.16 16 41 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.08 2.11 6.07 -51.93 -0.32 1.79 16 43 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 44 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 LS Contribution 343.78 15.07 5.18 5.18 Total: -1.00 -29.02 343.78 -7.02 -36.05 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -7.33 Total: 6.04 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: 0.16 Total: -10.94 kcal Atomic # 7 Polarization: -35.80 SS G_CDS: 0.25 Total: -35.55 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: -0.26 Total: -16.41 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.02 -7.02 -36.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458047510.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.892 kcal (2) G-P(sol) polarization free energy of solvation -29.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds