Wall clock time and date at job start Tue Mar 31 2020 05:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50697 * 120.00607 * 2 1 4 4 C 1.50702 * 119.99658 * 179.97438 * 2 1 3 5 5 H 1.09000 * 110.33221 * 232.34519 * 4 2 1 6 6 O 1.44425 * 110.46794 * 354.66197 * 4 2 1 7 7 C 1.44426 * 105.27915 * 159.38606 * 6 4 2 8 8 C 1.54480 * 104.80225 * 319.48834 * 7 6 4 9 9 C 1.54484 * 110.36911 * 110.09418 * 4 2 1 10 10 H 1.08990 * 110.50943 * 98.43681 * 9 4 2 11 11 C 1.50702 * 110.51136 * 335.72316 * 9 4 2 12 12 O 1.21280 * 120.00090 * 300.01291 * 11 9 4 13 13 N 1.34773 * 119.99858 * 120.00763 * 11 9 4 14 14 C 1.46494 * 120.00322 * 179.97438 * 13 11 9 15 15 C 1.52996 * 109.47355 * 180.02562 * 14 13 11 16 16 C 1.52998 * 109.47363 * 300.00455 * 15 14 13 17 17 C 1.53006 * 109.47265 * 60.00502 * 15 14 13 18 18 C 1.50706 * 109.47227 * 180.02562 * 15 14 13 19 19 H 1.08001 * 119.99901 * 359.97438 * 18 15 14 20 20 C 1.37875 * 119.99956 * 180.02562 * 18 15 14 21 21 N 1.31511 * 120.00183 * 0.02562 * 20 18 15 22 22 Si 1.86797 * 119.99778 * 179.97438 * 20 18 15 23 23 H 1.48506 * 109.47536 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47055 * 120.00300 * 22 20 18 25 25 H 1.48500 * 109.47680 * 239.99997 * 22 20 18 26 26 H 1.08006 * 119.99414 * 0.02562 * 1 2 3 27 27 H 1.07998 * 120.00388 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46427 * 274.33551 * 3 2 1 29 29 H 1.09006 * 109.46863 * 34.32726 * 3 2 1 30 30 H 1.08992 * 109.47373 * 154.33110 * 3 2 1 31 31 H 1.08992 * 110.37295 * 200.65434 * 7 6 4 32 32 H 1.09001 * 110.36942 * 78.31432 * 7 6 4 33 33 H 1.09002 * 110.50906 * 265.33219 * 8 7 6 34 34 H 1.09002 * 110.51177 * 142.61847 * 8 7 6 35 35 H 0.97008 * 120.00091 * 0.02562 * 13 11 9 36 36 H 1.09000 * 109.47018 * 300.00460 * 14 13 11 37 37 H 1.09007 * 109.46964 * 60.00236 * 14 13 11 38 38 H 1.08995 * 109.47370 * 59.99959 * 16 15 14 39 39 H 1.09006 * 109.46937 * 180.02562 * 16 15 14 40 40 H 1.09007 * 109.46893 * 299.99736 * 16 15 14 41 41 H 1.09000 * 109.47146 * 59.99528 * 17 15 14 42 42 H 1.08996 * 109.47396 * 180.02562 * 17 15 14 43 43 H 1.09007 * 109.46547 * 299.99925 * 17 15 14 44 44 H 0.97005 * 120.00188 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0634 -1.3052 0.0006 5 1 2.7935 -1.3206 0.8098 6 8 1.1491 -2.4160 0.1270 7 6 1.8727 -3.5629 -0.3702 8 6 2.6348 -3.0422 -1.6089 9 6 2.7632 -1.5227 -1.3594 10 1 3.8121 -1.2327 -1.2998 11 6 2.0606 -0.7482 -2.4446 12 8 0.8944 -0.9719 -2.6913 13 7 2.7282 0.1930 -3.1409 14 6 2.0454 0.9455 -4.1962 15 6 3.0211 1.9424 -4.8246 16 6 3.5233 2.9103 -3.7513 17 6 4.2080 1.1856 -5.4243 18 6 2.3186 2.7170 -5.9098 19 1 1.2801 2.5177 -6.1296 20 6 3.0019 3.6792 -6.6227 21 7 4.2668 3.9207 -6.3561 22 14 2.1312 4.6387 -7.9683 23 1 0.7223 4.1804 -8.0708 24 1 2.1575 6.0867 -7.6399 25 1 2.8213 4.4124 -9.2636 26 1 -0.5399 0.9354 -0.0004 27 1 -0.5401 -0.9352 0.0004 28 1 2.1780 1.6584 -1.0248 29 1 1.5103 2.0441 0.5796 30 1 3.0474 1.1565 0.4451 31 1 1.1797 -4.3541 -0.6559 32 1 2.5736 -3.9246 0.3822 33 1 2.0631 -3.2331 -2.5171 34 1 3.6204 -3.5033 -1.6727 35 1 3.6610 0.3717 -2.9438 36 1 1.6881 0.2560 -4.9611 37 1 1.1996 1.4844 -3.7691 38 1 4.0313 2.3504 -2.9661 39 1 4.2181 3.6208 -4.1992 40 1 2.6777 3.4495 -3.3241 41 1 3.8503 0.4960 -6.1889 42 1 4.9033 1.8958 -5.8716 43 1 4.7160 0.6256 -4.6391 44 1 4.7474 4.5980 -6.8575 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458047510.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:21 Heat of formation + Delta-G solvation = -89.478073 kcal Electronic energy + Delta-G solvation = -23565.301941 eV Core-core repulsion = 20289.180582 eV Total energy + Delta-G solvation = -3276.121359 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.63339 -39.57652 -37.93801 -35.94108 -34.93398 -33.41031 -32.47981 -29.70205 -28.08237 -27.53702 -27.48702 -26.87016 -24.53985 -23.00725 -21.24941 -20.56625 -19.66971 -18.35791 -17.72877 -17.36438 -16.86595 -16.54905 -16.44508 -16.12976 -15.81757 -14.94677 -14.77203 -14.71209 -14.46006 -14.05645 -13.99310 -13.89525 -13.26753 -13.10947 -13.04072 -12.87131 -12.68194 -12.59597 -12.55374 -12.28694 -12.23260 -12.14164 -12.10163 -11.80682 -11.46646 -11.23487 -10.79508 -10.71943 -10.55858 -10.39581 -10.01799 -9.72833 -8.02485 -6.17654 1.30777 1.39952 1.44579 1.53573 1.75901 2.33896 2.50675 2.90107 3.21133 3.47737 3.73506 3.89179 4.05881 4.21343 4.26893 4.31496 4.40499 4.45955 4.53012 4.60898 4.69973 4.74614 4.82736 4.84243 4.90524 5.02225 5.03516 5.07447 5.11311 5.13146 5.17313 5.21699 5.40592 5.64241 5.65087 5.67714 5.69225 5.78045 6.11541 6.17517 6.23534 6.44813 6.76961 6.86562 7.44449 7.50053 8.96281 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.028666 B = 0.004339 C = 0.004192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.542726 B = 6450.824755 C = 6678.472415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.148 4.148 3 C -0.115 4.115 4 C 0.131 3.869 5 H 0.116 0.884 6 O -0.388 6.388 7 C 0.045 3.955 8 C -0.136 4.136 9 C -0.134 4.134 10 H 0.134 0.866 11 C 0.517 3.483 12 O -0.579 6.579 13 N -0.709 5.709 14 C 0.154 3.846 15 C 0.052 3.948 16 C -0.117 4.117 17 C -0.120 4.120 18 C -0.528 4.528 19 H 0.039 0.961 20 C 0.031 3.969 21 N -0.897 5.897 22 Si 0.941 3.059 23 H -0.278 1.278 24 H -0.281 1.281 25 H -0.281 1.281 26 H 0.093 0.907 27 H 0.091 0.909 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.057 0.943 34 H 0.119 0.881 35 H 0.407 0.593 36 H 0.030 0.970 37 H 0.031 0.969 38 H 0.040 0.960 39 H 0.061 0.939 40 H 0.016 0.984 41 H 0.015 0.985 42 H 0.062 0.938 43 H 0.039 0.961 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.210 -10.962 13.968 18.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.149 4.149 3 C -0.172 4.172 4 C 0.073 3.927 5 H 0.133 0.867 6 O -0.308 6.308 7 C -0.031 4.031 8 C -0.174 4.174 9 C -0.156 4.156 10 H 0.152 0.848 11 C 0.304 3.696 12 O -0.458 6.458 13 N -0.360 5.360 14 C 0.030 3.970 15 C 0.051 3.949 16 C -0.175 4.175 17 C -0.178 4.178 18 C -0.566 4.566 19 H 0.058 0.942 20 C -0.169 4.169 21 N -0.536 5.536 22 Si 0.769 3.231 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.207 1.207 26 H 0.111 0.889 27 H 0.109 0.891 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.106 0.894 31 H 0.112 0.888 32 H 0.110 0.890 33 H 0.076 0.924 34 H 0.137 0.863 35 H 0.244 0.756 36 H 0.049 0.951 37 H 0.050 0.950 38 H 0.059 0.941 39 H 0.080 0.920 40 H 0.035 0.965 41 H 0.034 0.966 42 H 0.081 0.919 43 H 0.058 0.942 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.313 -10.983 13.794 17.783 hybrid contribution -0.346 0.892 -1.306 1.618 sum 1.967 -10.091 12.488 16.176 Atomic orbital electron populations 1.23575 0.96204 1.01198 0.99543 1.21718 0.95745 0.95167 1.02224 1.20826 1.00985 0.93190 1.02156 1.21821 0.90484 0.85423 0.94930 0.86679 1.89129 1.38837 1.17975 1.84846 1.23588 0.96067 0.88932 0.94540 1.22949 1.03268 0.91631 0.99587 1.22830 1.02234 0.96941 0.93598 0.84814 1.20776 0.86759 0.79717 0.82337 1.90668 1.18392 1.67922 1.68846 1.46172 1.15419 1.37966 1.36492 1.21139 0.95175 0.92753 0.87942 1.18347 0.92132 0.91327 0.93052 1.21637 0.99518 0.99848 0.96490 1.21663 0.99265 0.98325 0.98509 1.21293 0.96821 1.20023 1.18503 0.94220 1.25398 0.95491 0.97447 0.98590 1.69902 1.09078 1.33239 1.41368 0.85765 0.78763 0.78726 0.79884 1.20299 1.20651 1.20666 0.88869 0.89094 0.92616 0.91117 0.89386 0.88788 0.88955 0.92441 0.86291 0.75578 0.95144 0.95031 0.94107 0.92030 0.96476 0.96575 0.91918 0.94195 0.93037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.19 12.95 67.78 0.88 -4.31 16 2 C -0.15 -4.01 3.72 -16.49 -0.06 -4.07 16 3 C -0.11 -2.71 9.73 71.24 0.69 -2.02 16 4 C 0.13 3.00 3.47 30.35 0.11 3.10 16 5 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 6 O -0.39 -10.19 9.83 -148.98 -1.46 -11.66 16 7 C 0.04 0.82 7.63 72.49 0.55 1.37 16 8 C -0.14 -2.63 6.64 31.61 0.21 -2.42 16 9 C -0.13 -3.00 3.39 -10.52 -0.04 -3.03 16 10 H 0.13 2.01 7.97 -2.39 -0.02 1.99 16 11 C 0.52 16.89 4.71 87.66 0.41 17.30 16 12 O -0.58 -24.30 15.54 -3.03 -0.05 -24.35 16 13 N -0.71 -23.48 4.50 -463.07 -2.08 -25.56 16 14 C 0.15 6.53 4.50 86.38 0.39 6.92 16 15 C 0.05 2.37 0.50 -52.93 -0.03 2.34 16 16 C -0.12 -5.04 8.08 71.98 0.58 -4.45 16 17 C -0.12 -5.21 8.08 71.98 0.58 -4.62 16 18 C -0.53 -27.94 8.01 25.60 0.21 -27.74 16 19 H 0.04 2.18 7.74 -2.91 -0.02 2.16 16 20 C 0.03 1.60 5.15 84.65 0.44 2.04 16 21 N -0.90 -47.28 9.35 21.45 0.20 -47.08 16 22 Si 0.94 42.66 29.54 68.60 2.03 44.69 16 23 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 24 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 25 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 26 H 0.09 2.74 8.05 -2.91 -0.02 2.72 16 27 H 0.09 3.05 6.91 -2.91 -0.02 3.03 16 28 H 0.06 1.58 7.39 -2.38 -0.02 1.56 16 29 H 0.07 1.57 8.10 -2.38 -0.02 1.55 16 30 H 0.09 1.55 8.10 -2.39 -0.02 1.53 16 31 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.09 1.09 8.14 -2.39 -0.02 1.08 16 33 H 0.06 1.44 7.54 -2.39 -0.02 1.42 16 34 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.41 11.44 6.04 -92.70 -0.56 10.88 16 36 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.03 1.46 8.14 -2.38 -0.02 1.44 16 38 H 0.04 1.43 6.86 -2.39 -0.02 1.41 16 39 H 0.06 2.97 6.07 -2.38 -0.01 2.95 16 40 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 41 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.06 3.04 6.07 -2.39 -0.01 3.03 16 43 H 0.04 1.42 6.86 -2.38 -0.02 1.40 16 44 H 0.26 13.18 8.31 -92.70 -0.77 12.41 16 Total: -1.00 -64.91 343.78 3.97 -60.94 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: 0.41 Total: 22.61 kcal Atomic # 6 Polarization: -24.51 SS G_CDS: 4.92 Total: -19.58 kcal Atomic # 7 Polarization: -70.76 SS G_CDS: -1.88 Total: -72.64 kcal Atomic # 8 Polarization: -34.50 SS G_CDS: -1.51 Total: -36.01 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -64.91 3.97 -60.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458047510.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.537 kcal (2) G-P(sol) polarization free energy of solvation -64.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds