Wall clock time and date at job start Tue Mar 31 2020 05:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.46963 * 2 1 4 4 H 1.08998 * 109.46765 * 53.77480 * 3 2 1 5 5 C 1.50698 * 109.46887 * 173.77152 * 3 2 1 6 6 H 1.08001 * 119.99963 * 25.67755 * 5 3 2 7 7 C 1.37874 * 120.00159 * 205.67021 * 5 3 2 8 8 N 1.31511 * 119.99720 * 353.28200 * 7 5 3 9 9 Si 1.86800 * 120.00137 * 173.27668 * 7 5 3 10 10 H 1.48502 * 109.47080 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46963 * 120.00005 * 9 7 5 12 12 H 1.48493 * 109.47197 * 240.00124 * 9 7 5 13 13 N 1.46503 * 109.47009 * 293.77287 * 3 2 1 14 14 C 1.34773 * 119.99578 * 85.00542 * 13 3 2 15 15 O 1.21279 * 120.00275 * 359.97438 * 14 13 3 16 16 C 1.50704 * 119.99434 * 180.02562 * 14 13 3 17 17 H 1.09001 * 109.73462 * 300.65437 * 16 14 13 18 18 C 1.53571 * 109.73745 * 179.97438 * 16 14 13 19 19 C 1.52957 * 109.43520 * 168.23013 * 18 16 14 20 20 C 1.52346 * 110.20606 * 78.32545 * 19 18 16 21 21 C 1.53447 * 109.57317 * 44.40159 * 20 19 18 22 22 C 1.53909 * 108.29195 * 245.81103 * 21 20 19 23 23 C 1.51200 * 107.17616 * 69.32848 * 22 21 20 24 24 O 1.20763 * 120.13351 * 108.37724 * 23 22 21 25 25 C 1.50242 * 119.74091 * 288.37632 * 23 22 21 26 26 H 1.08992 * 109.46958 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46814 * 299.99967 * 1 2 3 28 28 H 1.09001 * 109.47308 * 59.99319 * 1 2 3 29 29 H 1.08995 * 109.46933 * 240.00279 * 2 1 3 30 30 H 1.09001 * 109.47260 * 120.00126 * 2 1 3 31 31 H 0.97004 * 120.00105 * 354.65823 * 8 7 5 32 32 H 0.96996 * 119.99549 * 265.00186 * 13 3 2 33 33 H 1.09004 * 109.47454 * 288.21896 * 18 16 14 34 34 H 1.09004 * 109.48326 * 48.23276 * 18 16 14 35 35 H 1.08997 * 109.34649 * 198.54995 * 19 18 16 36 36 H 1.08997 * 109.34531 * 318.25420 * 19 18 16 37 37 H 1.09004 * 109.45112 * 164.42607 * 20 19 18 38 38 H 1.08997 * 109.45689 * 284.36189 * 20 19 18 39 39 H 1.08999 * 109.70127 * 5.50483 * 21 20 19 40 40 H 1.08995 * 109.70153 * 126.11031 * 21 20 19 41 41 H 1.09002 * 109.91412 * 188.74131 * 22 21 20 42 42 H 1.09003 * 109.91711 * 309.91184 * 22 21 20 43 43 H 1.09001 * 109.39623 * 352.46618 * 25 23 22 44 44 H 1.09001 * 109.39831 * 232.73226 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5885 1.9875 0.8290 5 6 3.5391 1.4454 0.1541 6 1 4.1161 0.5893 -0.1630 7 6 4.1740 2.5408 0.6999 8 7 3.4906 3.6330 0.9637 9 14 6.0047 2.4735 1.0649 10 1 6.5378 1.1422 0.6790 11 1 6.7033 3.5297 0.2891 12 1 6.2287 2.6952 2.5160 13 7 1.6778 2.0886 -1.2641 14 6 0.4631 2.6546 -1.4077 15 8 -0.3302 2.6287 -0.4907 16 6 0.0904 3.3186 -2.7082 17 1 0.7905 4.1258 -2.9232 18 6 -1.3360 3.8798 -2.6138 19 6 -1.6022 4.7969 -3.8086 20 6 -1.9051 3.9684 -5.0507 21 6 -2.8763 2.8367 -4.6894 22 6 -2.1418 1.4955 -4.8644 23 6 -1.0968 1.4132 -3.7748 24 8 -1.2417 0.6470 -2.8526 25 6 0.1225 2.2883 -3.8437 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 2.5582 3.6964 0.7036 32 1 2.3122 2.1089 -1.9975 33 1 -2.0513 3.0573 -2.6204 34 1 -1.4430 4.4471 -1.6891 35 1 -2.4536 5.4404 -3.5872 36 1 -0.7223 5.4130 -3.9940 37 1 -2.3571 4.6057 -5.8108 38 1 -0.9794 3.5428 -5.4379 39 1 -3.1993 2.9461 -3.6541 40 1 -3.7422 2.8704 -5.3505 41 1 -2.8470 0.6703 -4.7656 42 1 -1.6619 1.4599 -5.8425 43 1 0.1423 2.8066 -4.8024 44 1 1.0164 1.6719 -3.7482 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000487140937.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:04 Heat of formation + Delta-G solvation = -98.152293 kcal Electronic energy + Delta-G solvation = -24088.689579 eV Core-core repulsion = 20812.192078 eV Total energy + Delta-G solvation = -3276.497501 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.65742 -38.52669 -36.91910 -35.05516 -33.24795 -32.14643 -31.57733 -30.66441 -27.08630 -26.69858 -25.32825 -23.04692 -22.38665 -20.47308 -20.39952 -19.47117 -18.49939 -17.33623 -16.51450 -15.99344 -15.61453 -15.35997 -14.89220 -14.37072 -14.04270 -14.00608 -13.79552 -13.59933 -13.30680 -12.96006 -12.57120 -12.36257 -12.21188 -11.99235 -11.81657 -11.58637 -11.36019 -11.06972 -10.93492 -10.76720 -10.62665 -10.56654 -10.38817 -10.35793 -10.19569 -10.08890 -9.65087 -9.28621 -8.94059 -8.60661 -8.50618 -7.60836 -6.49573 -4.29732 2.08150 3.37744 3.39921 3.54956 3.62707 4.01717 4.25631 4.43831 4.58910 4.66466 4.76862 4.92366 4.97363 5.08161 5.14738 5.25267 5.36205 5.36967 5.61040 5.61871 5.63749 5.75598 5.82044 5.88943 5.93957 5.98291 6.09539 6.21055 6.28179 6.31229 6.33097 6.47879 6.51036 6.90841 7.02891 7.13365 7.30418 7.44620 7.77382 7.81013 8.02765 8.33573 8.67192 8.90199 9.36430 9.50611 10.87592 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.024537 B = 0.005229 C = 0.004780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.848734 B = 5353.724513 C = 5856.272295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.114 4.114 3 C 0.245 3.755 4 H 0.051 0.949 5 C -0.608 4.608 6 H 0.055 0.945 7 C 0.030 3.970 8 N -0.893 5.893 9 Si 1.073 2.927 10 H -0.287 1.287 11 H -0.288 1.288 12 H -0.285 1.285 13 N -0.703 5.703 14 C 0.504 3.496 15 O -0.552 6.552 16 C -0.101 4.101 17 H 0.100 0.900 18 C -0.116 4.116 19 C -0.121 4.121 20 C -0.134 4.134 21 C -0.122 4.122 22 C -0.169 4.169 23 C 0.355 3.645 24 O -0.435 6.435 25 C -0.170 4.170 26 H 0.021 0.979 27 H 0.043 0.957 28 H 0.081 0.919 29 H 0.041 0.959 30 H 0.052 0.948 31 H 0.278 0.722 32 H 0.383 0.617 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.098 0.902 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.675 0.757 -15.328 17.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.153 4.153 3 C 0.145 3.855 4 H 0.069 0.931 5 C -0.646 4.646 6 H 0.073 0.927 7 C -0.178 4.178 8 N -0.527 5.527 9 Si 0.901 3.099 10 H -0.213 1.213 11 H -0.214 1.214 12 H -0.211 1.211 13 N -0.351 5.351 14 C 0.289 3.711 15 O -0.432 6.432 16 C -0.123 4.123 17 H 0.118 0.882 18 C -0.153 4.153 19 C -0.159 4.159 20 C -0.171 4.171 21 C -0.159 4.159 22 C -0.207 4.207 23 C 0.229 3.771 24 O -0.307 6.307 25 C -0.208 4.208 26 H 0.041 0.959 27 H 0.062 0.938 28 H 0.099 0.901 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.215 0.785 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.089 0.911 41 H 0.104 0.896 42 H 0.111 0.889 43 H 0.116 0.884 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.062 1.158 -13.462 15.734 hybrid contribution -0.836 -0.784 -1.202 1.661 sum -8.898 0.374 -14.664 17.157 Atomic orbital electron populations 1.22016 0.96621 0.98748 1.03586 1.21787 0.94681 0.98952 0.99895 1.18905 0.94764 0.88721 0.83101 0.93100 1.22198 0.91384 1.04655 1.46387 0.92653 1.25982 1.06532 0.92273 0.93055 1.70665 1.11987 1.27577 1.42444 0.83501 0.74051 0.75331 0.77011 1.21331 1.21399 1.21063 1.47515 1.13593 1.55753 1.18267 1.20293 0.83133 0.79236 0.88463 1.90618 1.50414 1.60027 1.42105 1.21518 0.99279 0.97785 0.93731 0.88163 1.21859 0.94819 0.99916 0.98747 1.21534 1.01811 0.97953 0.94595 1.21959 0.99826 0.97246 0.98108 1.21965 0.98140 0.92668 1.03165 1.22587 0.98654 0.99957 0.99455 1.24521 0.87084 0.80096 0.85376 1.90463 1.75675 1.32390 1.32149 1.22394 0.98958 0.98701 1.00713 0.95942 0.93760 0.90073 0.94055 0.92909 0.91038 0.78460 0.90726 0.90468 0.91829 0.91535 0.91822 0.90645 0.90203 0.91095 0.89638 0.88945 0.88428 0.88695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 8.54 37.16 0.32 -3.20 16 2 C -0.11 -2.70 5.58 -26.73 -0.15 -2.84 16 3 C 0.24 6.28 1.72 -69.08 -0.12 6.16 16 4 H 0.05 1.51 6.57 -51.93 -0.34 1.17 16 5 C -0.61 -16.40 8.49 -34.44 -0.29 -16.70 16 6 H 0.06 1.48 7.82 -52.49 -0.41 1.07 16 7 C 0.03 0.83 5.45 -17.82 -0.10 0.73 16 8 N -0.89 -26.41 13.56 55.43 0.75 -25.66 16 9 Si 1.07 24.25 29.91 -169.99 -5.08 19.17 16 10 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 11 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 N -0.70 -15.61 4.75 -54.93 -0.26 -15.87 16 14 C 0.50 10.62 5.04 -10.98 -0.06 10.57 16 15 O -0.55 -13.62 12.95 5.56 0.07 -13.55 16 16 C -0.10 -1.55 2.57 -91.29 -0.23 -1.79 16 17 H 0.10 1.40 7.89 -51.93 -0.41 0.99 16 18 C -0.12 -1.64 4.22 -26.46 -0.11 -1.75 16 19 C -0.12 -1.22 5.62 -27.09 -0.15 -1.37 16 20 C -0.13 -1.10 5.44 -26.83 -0.15 -1.24 16 21 C -0.12 -1.08 5.60 -26.03 -0.15 -1.23 16 22 C -0.17 -1.62 5.83 -27.16 -0.16 -1.78 16 23 C 0.36 4.87 4.29 -29.01 -0.12 4.74 16 24 O -0.44 -8.00 14.83 6.00 0.09 -7.91 16 25 C -0.17 -2.13 4.86 -27.92 -0.14 -2.27 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.04 1.07 7.92 -51.93 -0.41 0.65 16 28 H 0.08 1.89 3.19 -51.93 -0.17 1.73 16 29 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.28 8.43 6.93 -40.82 -0.28 8.15 16 32 H 0.38 7.80 8.04 -40.82 -0.33 7.47 16 33 H 0.07 1.12 3.82 -51.93 -0.20 0.93 16 34 H 0.08 1.26 7.72 -51.93 -0.40 0.86 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.63 7.83 -51.93 -0.41 0.23 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.57 4.50 -51.93 -0.23 0.33 16 39 H 0.08 0.86 5.56 -51.93 -0.29 0.57 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.09 0.66 7.97 -51.93 -0.41 0.25 16 43 H 0.10 0.87 5.20 -51.93 -0.27 0.60 16 44 H 0.09 1.26 7.32 -51.93 -0.38 0.88 16 LS Contribution 325.82 15.07 4.91 4.91 Total: -1.00 -32.87 325.82 -7.82 -40.70 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -6.70 Total: 10.18 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: -1.60 Total: -11.96 kcal Atomic # 7 Polarization: -42.02 SS G_CDS: 0.49 Total: -41.53 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: 0.16 Total: -21.46 kcal Atomic # 14 Polarization: 24.25 SS G_CDS: -5.08 Total: 19.17 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.87 -7.82 -40.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487140937.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.456 kcal (2) G-P(sol) polarization free energy of solvation -32.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds