Wall clock time and date at job start Tue Mar 31 2020 05:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47141 * 2 1 4 4 H 1.09000 * 109.47011 * 305.00832 * 3 2 1 5 5 C 1.50701 * 109.47000 * 185.00110 * 3 2 1 6 6 H 1.08002 * 119.99761 * 239.99828 * 5 3 2 7 7 C 1.37871 * 119.99694 * 60.28391 * 5 3 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 3 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 3 10 10 H 1.48504 * 109.47266 * 60.00049 * 9 7 5 11 11 H 1.48504 * 109.46970 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47383 * 299.99456 * 9 7 5 13 13 N 1.46499 * 109.46437 * 65.00436 * 3 2 1 14 14 C 1.34776 * 120.00348 * 274.99648 * 13 3 2 15 15 O 1.21284 * 119.99546 * 359.97438 * 14 13 3 16 16 C 1.50696 * 120.00271 * 180.02562 * 14 13 3 17 17 H 1.08997 * 109.48592 * 59.97857 * 16 14 13 18 18 C 1.52671 * 109.47785 * 180.02562 * 16 14 13 19 19 C 1.54025 * 110.40097 * 193.52760 * 18 16 14 20 20 C 1.52455 * 111.04791 * 44.79016 * 19 18 16 21 21 C 1.54101 * 109.26787 * 245.78089 * 20 19 18 22 22 C 1.52047 * 109.16184 * 78.00665 * 21 20 19 23 23 C 1.51109 * 109.14404 * 287.36845 * 22 21 20 24 24 O 1.20762 * 120.43361 * 291.13122 * 23 22 21 25 25 C 1.49508 * 119.13929 * 111.15073 * 23 22 21 26 26 H 1.08997 * 109.47178 * 59.99345 * 1 2 3 27 27 H 1.08998 * 109.47411 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47019 * 299.99139 * 1 2 3 29 29 H 1.08999 * 109.47019 * 240.00861 * 2 1 3 30 30 H 1.08996 * 109.47643 * 120.00914 * 2 1 3 31 31 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 32 32 H 0.97000 * 119.99954 * 95.00750 * 13 3 2 33 33 H 1.08998 * 109.31356 * 313.81285 * 18 16 14 34 34 H 1.08999 * 109.31197 * 73.43481 * 18 16 14 35 35 H 1.08995 * 109.16306 * 165.19833 * 19 18 16 36 36 H 1.09003 * 109.16683 * 284.44070 * 19 18 16 37 37 H 1.08994 * 109.50866 * 5.72721 * 20 19 18 38 38 H 1.09003 * 109.50259 * 125.80815 * 20 19 18 39 39 H 1.08997 * 109.52446 * 197.90687 * 21 20 19 40 40 H 1.09000 * 109.52704 * 318.03699 * 21 20 19 41 41 H 1.08997 * 109.52824 * 47.27753 * 22 21 20 42 42 H 1.09006 * 109.52519 * 167.40988 * 22 21 20 43 43 H 1.08996 * 109.79761 * 197.42475 * 25 23 22 44 44 H 1.08996 * 109.79832 * 76.56508 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1429 0.8836 -1.2308 8 7 3.4058 0.3422 -2.1759 9 14 6.0043 0.8927 -1.3880 10 1 6.6013 0.1572 -0.2444 11 1 6.3968 0.2332 -2.6593 12 1 6.4945 2.2945 -1.3852 13 7 1.6525 2.0973 1.2519 14 6 0.4352 2.6643 1.3672 15 8 -0.3392 2.6327 0.4343 16 6 0.0368 3.3383 2.6548 17 1 0.7282 4.1536 2.8675 18 6 -1.3795 3.8928 2.5221 19 6 -1.6856 4.8656 3.6764 20 6 -0.5198 5.8193 3.9124 21 6 0.0938 5.5392 5.2980 22 6 0.9712 4.3003 5.2141 23 6 0.0918 3.0777 5.0896 24 8 -0.5924 2.7193 6.0179 25 6 0.0801 2.3174 3.8024 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5139 0.8898 31 1 3.8287 -0.0519 -2.9548 32 1 2.2720 2.1230 1.9978 33 1 -1.4729 4.4195 1.5724 34 1 -2.0931 3.0694 2.5494 35 1 -2.5765 5.4434 3.4306 36 1 -1.8695 4.2945 4.5864 37 1 0.2363 5.6676 3.1421 38 1 -0.8777 6.8481 3.8735 39 1 0.6970 6.3923 5.6085 40 1 -0.7034 5.3737 6.0227 41 1 1.6208 4.3722 4.3418 42 1 1.5791 4.2226 6.1156 43 1 -0.8006 1.6766 3.7600 44 1 0.9826 1.7113 3.7234 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000487140939.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:06 Heat of formation + Delta-G solvation = -118.603769 kcal Electronic energy + Delta-G solvation = -23501.290225 eV Core-core repulsion = 20223.905881 eV Total energy + Delta-G solvation = -3277.384344 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.73314 -40.34496 -37.83302 -36.79559 -34.60164 -34.11733 -32.83998 -32.25513 -29.01288 -27.51097 -26.86722 -24.94748 -23.41304 -22.23864 -21.23491 -20.86029 -19.95104 -18.94666 -17.77357 -17.31492 -17.04230 -16.56597 -16.24344 -15.89410 -15.70890 -15.37135 -14.92494 -14.78104 -14.70554 -14.52969 -13.83661 -13.55135 -13.36695 -13.26024 -13.11832 -13.04731 -12.87049 -12.64431 -12.59331 -12.37148 -12.16512 -12.01253 -11.96127 -11.66300 -11.55422 -11.27874 -11.20395 -11.01542 -10.78401 -10.51117 -10.24031 -9.57156 -8.12621 -6.29712 0.94360 1.47739 1.48766 1.56407 1.89442 2.38162 2.65231 3.14161 3.17359 3.65726 3.73051 3.80172 3.92065 4.03434 4.12809 4.20757 4.34218 4.49875 4.51435 4.56306 4.59025 4.62428 4.76959 4.78801 4.89472 4.92357 4.96913 5.09621 5.13980 5.18505 5.23945 5.28516 5.34426 5.35964 5.46313 5.52362 5.59736 5.67538 5.83131 5.97219 6.20733 6.51338 6.79160 7.05089 7.38004 7.65317 8.92354 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021966 B = 0.004620 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.362456 B = 6058.497530 C = 6482.908768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.121 4.121 3 C 0.279 3.721 4 H -0.002 1.002 5 C -0.546 4.546 6 H 0.074 0.926 7 C 0.016 3.984 8 N -0.916 5.916 9 Si 0.967 3.033 10 H -0.265 1.265 11 H -0.290 1.290 12 H -0.270 1.270 13 N -0.703 5.703 14 C 0.502 3.498 15 O -0.585 6.585 16 C -0.098 4.098 17 H 0.137 0.863 18 C -0.101 4.101 19 C -0.124 4.124 20 C -0.133 4.133 21 C -0.108 4.108 22 C -0.176 4.176 23 C 0.381 3.619 24 O -0.497 6.497 25 C -0.166 4.166 26 H 0.024 0.976 27 H 0.041 0.959 28 H 0.046 0.954 29 H 0.069 0.931 30 H 0.041 0.959 31 H 0.263 0.737 32 H 0.403 0.597 33 H 0.063 0.937 34 H 0.053 0.947 35 H 0.074 0.926 36 H 0.054 0.946 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.097 0.903 40 H 0.061 0.939 41 H 0.109 0.891 42 H 0.110 0.890 43 H 0.084 0.916 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.267 9.477 14.831 17.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.160 4.160 3 C 0.175 3.825 4 H 0.016 0.984 5 C -0.584 4.584 6 H 0.093 0.907 7 C -0.184 4.184 8 N -0.555 5.555 9 Si 0.792 3.208 10 H -0.190 1.190 11 H -0.216 1.216 12 H -0.195 1.195 13 N -0.352 5.352 14 C 0.289 3.711 15 O -0.466 6.466 16 C -0.118 4.118 17 H 0.154 0.846 18 C -0.139 4.139 19 C -0.161 4.161 20 C -0.170 4.170 21 C -0.145 4.145 22 C -0.214 4.214 23 C 0.259 3.741 24 O -0.374 6.374 25 C -0.204 4.204 26 H 0.043 0.957 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.087 0.913 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.239 0.761 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.072 0.928 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.115 0.885 40 H 0.079 0.921 41 H 0.127 0.873 42 H 0.128 0.872 43 H 0.103 0.897 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.148 9.165 14.467 17.621 hybrid contribution 0.921 -0.504 -0.552 1.186 sum -3.227 8.661 13.915 16.705 Atomic orbital electron populations 1.21681 0.97163 0.98950 1.00290 1.21786 0.93556 0.99446 1.01218 1.18330 0.93546 0.89004 0.81625 0.98427 1.21566 0.91478 1.38856 1.06468 0.90743 1.25743 1.03040 0.94497 0.95144 1.70046 1.37070 1.38564 1.09773 0.85473 0.79452 0.78455 0.77393 1.18981 1.21607 1.19547 1.46242 1.15605 1.55972 1.17422 1.21035 0.81673 0.78465 0.89932 1.90664 1.52475 1.60847 1.42619 1.21602 1.00810 0.98841 0.90592 0.84571 1.21553 0.93898 0.99031 0.99456 1.21829 0.99789 0.97246 0.97265 1.21999 0.97752 0.99955 0.97338 1.21622 0.99103 0.96679 0.97123 1.22262 0.99190 0.93487 1.06420 1.24594 0.78038 0.84787 0.86631 1.90400 1.38153 1.66685 1.42125 1.22235 1.05996 0.98730 0.93436 0.95691 0.93953 0.93541 0.91274 0.94001 0.92754 0.76144 0.91789 0.92777 0.90708 0.92764 0.90513 0.89991 0.88465 0.92058 0.87268 0.87230 0.89692 0.86295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.47 8.52 71.98 0.61 -4.86 16 2 C -0.12 -5.80 5.45 30.60 0.17 -5.63 16 3 C 0.28 13.62 2.24 44.25 0.10 13.72 16 4 H 0.00 -0.13 7.58 -2.39 -0.02 -0.15 16 5 C -0.55 -27.52 8.72 25.60 0.22 -27.30 16 6 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 7 C 0.02 0.83 5.30 84.65 0.45 1.27 16 8 N -0.92 -51.48 11.30 21.45 0.24 -51.24 16 9 Si 0.97 40.81 29.54 68.60 2.03 42.83 16 10 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 11 H -0.29 -12.35 7.11 99.48 0.71 -11.65 16 12 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 13 N -0.70 -26.33 4.79 -446.09 -2.13 -28.46 16 14 C 0.50 17.92 5.71 87.66 0.50 18.42 16 15 O -0.59 -26.21 12.86 -3.04 -0.04 -26.25 16 16 C -0.10 -2.38 2.07 -11.43 -0.02 -2.41 16 17 H 0.14 2.59 3.44 -2.39 -0.01 2.59 16 18 C -0.10 -2.52 4.54 30.83 0.14 -2.38 16 19 C -0.12 -2.35 5.38 30.76 0.17 -2.19 16 20 C -0.13 -1.95 5.51 30.79 0.17 -1.78 16 21 C -0.11 -1.41 5.63 30.65 0.17 -1.24 16 22 C -0.18 -2.48 5.45 29.66 0.16 -2.31 16 23 C 0.38 7.97 4.16 28.86 0.12 8.09 16 24 O -0.50 -13.82 17.43 -1.46 -0.03 -13.85 16 25 C -0.17 -3.71 5.24 29.70 0.16 -3.56 16 26 H 0.02 1.19 7.85 -2.39 -0.02 1.17 16 27 H 0.04 1.66 8.14 -2.39 -0.02 1.65 16 28 H 0.05 1.96 5.65 -2.39 -0.01 1.94 16 29 H 0.07 3.75 5.96 -2.39 -0.01 3.74 16 30 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 32 H 0.40 12.28 7.90 -92.71 -0.73 11.55 16 33 H 0.06 1.80 7.59 -2.39 -0.02 1.78 16 34 H 0.05 1.48 7.86 -2.39 -0.02 1.46 16 35 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.05 1.14 5.65 -2.39 -0.01 1.13 16 37 H 0.08 1.14 5.52 -2.39 -0.01 1.13 16 38 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.10 0.87 8.14 -2.39 -0.02 0.86 16 40 H 0.06 0.96 7.57 -2.39 -0.02 0.94 16 41 H 0.11 1.21 6.16 -2.39 -0.01 1.19 16 42 H 0.11 1.28 8.14 -2.38 -0.02 1.26 16 43 H 0.08 2.14 7.84 -2.39 -0.02 2.12 16 44 H 0.12 2.42 7.24 -2.39 -0.02 2.40 16 Total: -1.00 -66.81 329.85 3.45 -63.35 By element: Atomic # 1 Polarization: 25.50 SS G_CDS: 0.27 Total: 25.77 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: 3.11 Total: -12.15 kcal Atomic # 7 Polarization: -77.81 SS G_CDS: -1.89 Total: -79.71 kcal Atomic # 8 Polarization: -40.03 SS G_CDS: -0.06 Total: -40.10 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.83 kcal Total: -66.81 3.45 -63.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487140939.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.250 kcal (2) G-P(sol) polarization free energy of solvation -66.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds