Wall clock time and date at job start Tue Mar 31 2020 05:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47449 * 2 1 4 4 H 1.09002 * 109.47106 * 55.00423 * 3 2 1 5 5 C 1.50694 * 109.47355 * 175.00473 * 3 2 1 6 6 H 1.08000 * 120.00563 * 120.00152 * 5 3 2 7 7 C 1.37885 * 119.99902 * 299.99988 * 5 3 2 8 8 N 1.31516 * 119.99913 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99854 * 179.72538 * 7 5 3 10 10 H 1.48498 * 109.47200 * 59.99994 * 9 7 5 11 11 H 1.48498 * 109.46671 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47156 * 300.00008 * 9 7 5 13 13 N 1.46497 * 109.47021 * 295.00545 * 3 2 1 14 14 C 1.34785 * 120.00273 * 84.99913 * 13 3 2 15 15 O 1.21274 * 119.99508 * 359.97438 * 14 13 3 16 16 C 1.50699 * 119.99909 * 180.02562 * 14 13 3 17 17 H 1.08999 * 109.48234 * 59.97607 * 16 14 13 18 18 C 1.52662 * 109.47399 * 179.97438 * 16 14 13 19 19 C 1.54031 * 110.40198 * 193.52915 * 18 16 14 20 20 C 1.52464 * 111.04848 * 44.78891 * 19 18 16 21 21 C 1.54096 * 109.26718 * 245.78590 * 20 19 18 22 22 C 1.52044 * 109.16592 * 78.00416 * 21 20 19 23 23 C 1.51117 * 109.14617 * 287.37214 * 22 21 20 24 24 O 1.20758 * 120.42291 * 291.12808 * 23 22 21 25 25 C 1.49498 * 119.14470 * 111.14604 * 23 22 21 26 26 H 1.08997 * 109.47578 * 180.02562 * 1 2 3 27 27 H 1.09010 * 109.46804 * 299.99684 * 1 2 3 28 28 H 1.09002 * 109.47653 * 59.99255 * 1 2 3 29 29 H 1.09002 * 109.46939 * 240.00609 * 2 1 3 30 30 H 1.09001 * 109.47644 * 120.00188 * 2 1 3 31 31 H 0.97001 * 119.99646 * 180.02562 * 8 7 5 32 32 H 0.97006 * 120.00030 * 264.99377 * 13 3 2 33 33 H 1.08997 * 109.31849 * 313.81661 * 18 16 14 34 34 H 1.09003 * 109.31371 * 73.43599 * 18 16 14 35 35 H 1.08992 * 109.16360 * 165.19975 * 19 18 16 36 36 H 1.09004 * 109.15975 * 284.44563 * 19 18 16 37 37 H 1.08999 * 109.50213 * 5.72511 * 20 19 18 38 38 H 1.08997 * 109.50174 * 125.80467 * 20 19 18 39 39 H 1.09003 * 109.51798 * 197.90074 * 21 20 19 40 40 H 1.08991 * 109.52445 * 318.03178 * 21 20 19 41 41 H 1.08999 * 109.52847 * 47.27347 * 22 21 20 42 42 H 1.08999 * 109.52958 * 167.40780 * 22 21 20 43 43 H 1.08998 * 109.80039 * 197.42359 * 25 23 22 44 44 H 1.09004 * 109.79778 * 76.56304 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5419 1.4442 0.1237 6 1 4.1472 1.8888 -0.6524 7 6 4.1433 0.8783 1.2279 8 7 3.4063 0.3364 2.1728 9 14 6.0054 0.8736 1.3775 10 1 6.5058 2.2718 1.3736 11 1 6.3981 0.2114 2.6473 12 1 6.5923 0.1346 0.2310 13 7 1.6524 2.0975 -1.2517 14 6 0.4350 2.6645 -1.3668 15 8 -0.3396 2.6320 -0.4342 16 6 0.0361 3.3378 -2.6547 17 1 0.0674 2.6133 -3.4685 18 6 -1.3799 3.8925 -2.5217 19 6 -1.9369 4.2801 -3.9044 20 6 -1.6436 3.1967 -4.9363 21 6 -0.6721 3.7527 -5.9953 22 6 0.7377 3.7570 -5.4261 23 6 0.8526 4.8556 -4.3949 24 8 0.8184 6.0152 -4.7304 25 6 1.0095 4.4884 -2.9543 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.8932 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 3.8294 -0.0614 2.9497 32 1 2.2719 2.1232 -1.9978 33 1 -2.0231 3.1353 -2.0733 34 1 -1.3627 4.7753 -1.8826 35 1 -3.0151 4.4204 -3.8294 36 1 -1.4762 5.2140 -4.2267 37 1 -1.1906 2.3370 -4.4425 38 1 -2.5727 2.8919 -5.4180 39 1 -0.7039 3.1234 -6.8848 40 1 -0.9629 4.7697 -6.2581 41 1 0.9445 2.7947 -4.9578 42 1 1.4541 3.9329 -6.2286 43 1 0.7709 5.3468 -2.3264 44 1 2.0330 4.1648 -2.7651 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000487140940.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:09 Heat of formation + Delta-G solvation = -100.569480 kcal Electronic energy + Delta-G solvation = -23484.165932 eV Core-core repulsion = 20207.563614 eV Total energy + Delta-G solvation = -3276.602319 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.64974 -38.95808 -36.76408 -35.08735 -33.49336 -32.42236 -31.65058 -30.70173 -27.21575 -26.59780 -25.73540 -23.17093 -22.37475 -20.96060 -19.81705 -19.47036 -18.88238 -17.51400 -16.28550 -16.00298 -15.63053 -15.29414 -15.03854 -14.60141 -14.31881 -14.15231 -13.87658 -13.86638 -13.29288 -12.72352 -12.54742 -12.36204 -12.23410 -12.07172 -11.67868 -11.53463 -11.38246 -11.24819 -11.13249 -11.02922 -10.84787 -10.83215 -10.42082 -10.35874 -10.33241 -10.15005 -9.68910 -9.63479 -9.08408 -8.87610 -8.51488 -7.84519 -6.14461 -4.24170 1.87548 3.23524 3.29472 3.29779 3.34455 3.90457 4.10141 4.34757 4.53477 4.65765 4.69274 4.83023 4.94741 5.03530 5.06423 5.16998 5.24680 5.41346 5.43143 5.56064 5.59659 5.71710 5.75244 5.81351 5.86541 6.02264 6.04161 6.13722 6.32358 6.36788 6.39183 6.43475 6.63728 7.00972 7.17513 7.34351 7.42031 7.43335 7.59270 7.70656 7.87919 8.16195 8.64094 8.75363 9.11282 9.43493 10.90694 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.022029 B = 0.004731 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.767139 B = 5917.076120 C = 6617.875980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.049 0.951 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.709 5.709 14 C 0.505 3.495 15 O -0.544 6.544 16 C -0.115 4.115 17 H 0.108 0.892 18 C -0.103 4.103 19 C -0.131 4.131 20 C -0.133 4.133 21 C -0.111 4.111 22 C -0.177 4.177 23 C 0.373 3.627 24 O -0.465 6.465 25 C -0.167 4.167 26 H 0.022 0.978 27 H 0.049 0.951 28 H 0.038 0.962 29 H 0.030 0.970 30 H 0.098 0.902 31 H 0.265 0.735 32 H 0.386 0.614 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.098 0.902 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.624 3.750 -14.424 16.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.067 0.933 5 C -0.574 4.574 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.727 3.273 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.356 5.356 14 C 0.289 3.711 15 O -0.422 6.422 16 C -0.136 4.136 17 H 0.126 0.874 18 C -0.141 4.141 19 C -0.169 4.169 20 C -0.170 4.170 21 C -0.149 4.149 22 C -0.215 4.215 23 C 0.249 3.751 24 O -0.339 6.339 25 C -0.205 4.205 26 H 0.041 0.959 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.049 0.951 30 H 0.117 0.883 31 H 0.075 0.925 32 H 0.218 0.782 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.111 0.889 42 H 0.111 0.889 43 H 0.116 0.884 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -7.169 4.223 -13.706 16.034 hybrid contribution 1.422 -0.172 -0.171 1.443 sum -5.747 4.051 -13.876 15.556 Atomic orbital electron populations 1.21838 0.98372 0.97995 1.01214 1.21933 0.92580 0.99865 1.02254 1.18772 0.94133 0.89160 0.81061 0.93335 1.21185 0.90731 1.39174 1.06279 0.92202 1.24878 0.98522 0.94786 0.95396 1.69882 1.35219 1.37463 1.09332 0.86536 0.84948 0.78314 0.77465 1.20208 1.21137 1.20174 1.46512 1.14635 1.56024 1.18450 1.20203 0.82807 0.79334 0.88762 1.90670 1.51374 1.59898 1.40305 1.21682 0.96220 0.97390 0.98321 0.87442 1.21581 0.94199 1.02010 0.96267 1.21883 1.01315 0.98657 0.95008 1.21973 0.99574 0.99056 0.96434 1.21617 0.92648 1.02240 0.98363 1.22180 0.99673 1.00145 0.99497 1.24364 0.69124 0.89647 0.91914 1.90396 1.36974 1.22509 1.83994 1.22237 1.01862 1.00671 0.95689 0.95913 0.93179 0.94286 0.95073 0.88338 0.92502 0.78156 0.90247 0.91261 0.91543 0.91975 0.90545 0.91531 0.90883 0.91107 0.88889 0.88857 0.88378 0.87261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.51 37.15 0.32 -2.63 16 2 C -0.13 -2.99 5.45 -26.73 -0.15 -3.13 16 3 C 0.27 6.50 2.24 -69.09 -0.15 6.35 16 4 H 0.05 1.37 7.58 -51.93 -0.39 0.98 16 5 C -0.54 -13.61 8.73 -34.44 -0.30 -13.91 16 6 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.20 11.29 55.43 0.63 -23.58 16 9 Si 0.90 20.17 29.54 -169.99 -5.02 15.15 16 10 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 11 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 13 N -0.71 -13.47 4.79 -54.94 -0.26 -13.73 16 14 C 0.50 9.06 5.71 -10.98 -0.06 8.99 16 15 O -0.54 -11.85 12.86 5.56 0.07 -11.78 16 16 C -0.11 -1.48 2.07 -91.60 -0.19 -1.67 16 17 H 0.11 1.16 3.44 -51.93 -0.18 0.99 16 18 C -0.10 -1.30 4.54 -26.37 -0.12 -1.42 16 19 C -0.13 -1.35 5.38 -26.47 -0.14 -1.50 16 20 C -0.13 -1.17 5.51 -26.43 -0.15 -1.31 16 21 C -0.11 -0.92 5.63 -26.65 -0.15 -1.07 16 22 C -0.18 -1.56 5.45 -28.17 -0.15 -1.71 16 23 C 0.37 4.35 4.16 -29.41 -0.12 4.23 16 24 O -0.46 -6.85 17.43 6.00 0.10 -6.74 16 25 C -0.17 -2.03 5.24 -28.12 -0.15 -2.18 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 1.16 7.85 -51.92 -0.41 0.75 16 28 H 0.04 0.80 5.64 -51.93 -0.29 0.50 16 29 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.10 2.58 5.95 -51.93 -0.31 2.27 16 31 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 32 H 0.39 6.26 7.91 -40.82 -0.32 5.94 16 33 H 0.08 1.11 7.59 -51.93 -0.39 0.71 16 34 H 0.07 0.94 7.86 -51.93 -0.41 0.53 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.70 5.65 -51.93 -0.29 0.41 16 37 H 0.08 0.69 5.52 -51.93 -0.29 0.40 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.65 7.57 -51.93 -0.39 0.26 16 41 H 0.09 0.71 6.16 -51.93 -0.32 0.39 16 42 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.10 1.29 7.84 -51.93 -0.41 0.88 16 44 H 0.11 1.27 7.24 -51.93 -0.38 0.90 16 LS Contribution 329.83 15.07 4.97 4.97 Total: -1.00 -29.96 329.83 -7.98 -37.95 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -6.86 Total: 7.06 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: -1.61 Total: -9.30 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: 0.36 Total: -37.31 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: 0.18 Total: -18.52 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.96 -7.98 -37.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487140940.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.623 kcal (2) G-P(sol) polarization free energy of solvation -29.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds