Wall clock time and date at job start Tue Mar 31 2020 05:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46921 * 2 1 4 4 N 1.46505 * 109.46514 * 119.99974 * 2 1 3 5 5 C 1.46499 * 119.99742 * 295.79333 * 4 2 1 6 6 C 1.50704 * 109.47320 * 90.00765 * 5 4 2 7 7 H 1.07999 * 119.99698 * 359.97438 * 6 5 4 8 8 C 1.37869 * 120.00439 * 179.97438 * 6 5 4 9 9 N 1.31506 * 120.00245 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 119.99870 * 359.97438 * 8 6 5 11 11 H 1.48503 * 109.47324 * 90.00121 * 10 8 6 12 12 H 1.48500 * 109.47071 * 210.00183 * 10 8 6 13 13 H 1.48500 * 109.47407 * 330.00077 * 10 8 6 14 14 C 1.34771 * 120.00062 * 116.07793 * 4 2 1 15 15 O 1.21615 * 120.00116 * 184.71138 * 14 4 2 16 16 C 1.47099 * 119.99928 * 4.70535 * 14 4 2 17 17 C 1.33000 * 119.99718 * 186.92114 * 16 14 4 18 18 C 1.50692 * 120.00477 * 13.16901 * 17 16 14 19 19 C 1.53171 * 109.54769 * 249.08837 * 18 17 16 20 20 C 1.53108 * 109.15765 * 183.23708 * 19 18 17 21 21 O 1.42900 * 109.48265 * 57.47856 * 20 19 18 22 22 C 1.42897 * 114.09842 * 298.88432 * 21 20 19 23 23 C 1.53099 * 109.41447 * 61.16244 * 22 21 20 24 24 H 1.09000 * 109.47160 * 305.15168 * 1 2 3 25 25 H 1.08997 * 109.46699 * 65.14846 * 1 2 3 26 26 H 1.08996 * 109.47128 * 185.14664 * 1 2 3 27 27 H 1.08992 * 109.47042 * 239.99631 * 2 1 3 28 28 H 1.09003 * 109.46509 * 174.63442 * 3 2 1 29 29 H 1.08991 * 109.47396 * 294.62990 * 3 2 1 30 30 H 1.09002 * 109.47196 * 54.63983 * 3 2 1 31 31 H 1.09008 * 109.46879 * 210.00387 * 5 4 2 32 32 H 1.08997 * 109.47589 * 330.00377 * 5 4 2 33 33 H 0.97002 * 120.00266 * 179.97438 * 9 8 6 34 34 H 1.08002 * 120.00113 * 6.91733 * 16 14 4 35 35 H 1.08004 * 119.99251 * 193.17705 * 17 16 14 36 36 H 1.09005 * 109.54025 * 9.26809 * 18 17 16 37 37 H 1.08999 * 109.52193 * 303.06103 * 19 18 17 38 38 H 1.09001 * 109.52048 * 63.24667 * 19 18 17 39 39 H 1.08994 * 109.41003 * 297.49142 * 20 19 18 40 40 H 1.09007 * 109.47898 * 177.50174 * 20 19 18 41 41 H 1.08999 * 109.48406 * 301.17777 * 22 21 20 42 42 H 1.09002 * 109.48048 * 181.14049 * 22 21 20 43 43 H 1.08995 * 109.51685 * 182.48741 * 23 22 21 44 44 H 1.08996 * 109.57185 * 62.32941 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6907 1.1963 5 6 1.7418 -0.1386 2.5248 6 6 0.4409 -0.6980 3.0406 7 1 -0.1236 -1.3947 2.4387 8 6 -0.0285 -0.3204 4.2807 9 7 -1.1639 -0.8082 4.7305 10 14 0.9484 0.8841 5.3220 11 1 0.5164 2.2705 5.0116 12 1 0.7099 0.6016 6.7603 13 1 2.3954 0.7376 5.0221 14 6 2.7265 -1.8307 1.0743 15 8 3.0583 -2.4497 2.0672 16 6 3.0983 -2.3264 -0.2599 17 6 3.6753 -3.5177 -0.3896 18 6 3.6822 -4.4818 0.7685 19 6 5.1102 -4.6324 1.3016 20 6 5.1204 -5.6737 2.4240 21 8 4.6084 -6.9127 1.9292 22 6 3.2597 -6.8419 1.4623 23 6 3.1751 -5.8491 0.2998 24 1 -0.3633 0.5917 0.8402 25 1 -0.3632 0.4319 -0.9325 26 1 -0.3633 -1.0235 0.0922 27 1 1.8933 -0.5139 -0.8899 28 1 3.1258 1.4439 0.0961 29 1 1.7573 1.9278 -0.9341 30 1 1.6004 1.9833 0.8381 31 1 2.5489 -0.4090 3.2057 32 1 1.6700 0.9470 2.4595 33 1 -1.4939 -0.5428 5.6031 34 1 2.9026 -1.7231 -1.1340 35 1 4.1392 -3.7939 -1.3250 36 1 3.0351 -4.1049 1.5606 37 1 5.7671 -4.9604 0.4960 38 1 5.4574 -3.6744 1.6886 39 1 4.4966 -5.3253 3.2470 40 1 6.1415 -5.8175 2.7772 41 1 2.6114 -6.5087 2.2727 42 1 2.9403 -7.8272 1.1227 43 1 2.1396 -5.7606 -0.0288 44 1 3.7909 -6.2021 -0.5273 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491851882.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:39 Heat of formation + Delta-G solvation = -61.116955 kcal Electronic energy + Delta-G solvation = -23261.627278 eV Core-core repulsion = 19986.735749 eV Total energy + Delta-G solvation = -3274.891529 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.79715 -38.82941 -36.35725 -34.67740 -32.76470 -31.33481 -31.01560 -30.90394 -28.13401 -26.79098 -25.10259 -23.37186 -22.94657 -21.67647 -20.38196 -20.03688 -17.67743 -17.05527 -16.85084 -15.90728 -15.81480 -15.17660 -14.76879 -14.51243 -14.06219 -13.79572 -13.69670 -13.59277 -13.44100 -12.89188 -12.60968 -12.50244 -12.23314 -11.97793 -11.84271 -11.67288 -11.46926 -11.20097 -11.10921 -10.89067 -10.87576 -10.73382 -10.45497 -10.38680 -10.08709 -9.93789 -9.44287 -9.39837 -9.07700 -8.57421 -8.55272 -7.66096 -6.06978 -4.04123 1.69768 3.26010 3.34882 3.38667 3.79289 3.93935 4.01340 4.40385 4.80155 4.97451 5.04133 5.08275 5.16969 5.20861 5.26760 5.43240 5.45286 5.50825 5.56906 5.63189 5.75769 5.77954 5.82698 5.94185 6.00728 6.07048 6.08944 6.15043 6.22294 6.30404 6.31787 6.41393 6.52202 6.54478 6.75202 6.91761 6.97331 7.06671 7.32681 7.41369 7.63769 8.31359 8.49770 8.96248 9.02609 9.53935 11.06292 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.015579 B = 0.005541 C = 0.004655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.870676 B = 5051.767438 C = 6013.679393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.131 3.869 3 C -0.163 4.163 4 N -0.582 5.582 5 C 0.215 3.785 6 C -0.518 4.518 7 H 0.076 0.924 8 C 0.071 3.929 9 N -0.898 5.898 10 Si 0.870 3.130 11 H -0.276 1.276 12 H -0.285 1.285 13 H -0.265 1.265 14 C 0.535 3.465 15 O -0.533 6.533 16 C -0.214 4.214 17 C -0.066 4.066 18 C -0.103 4.103 19 C -0.131 4.131 20 C 0.061 3.939 21 O -0.389 6.389 22 C 0.062 3.938 23 C -0.146 4.146 24 H 0.077 0.923 25 H 0.048 0.952 26 H 0.057 0.943 27 H 0.081 0.919 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.038 0.962 32 H 0.026 0.974 33 H 0.263 0.737 34 H 0.125 0.875 35 H 0.115 0.885 36 H 0.137 0.863 37 H 0.059 0.941 38 H 0.075 0.925 39 H 0.056 0.944 40 H 0.088 0.912 41 H 0.054 0.946 42 H 0.089 0.911 43 H 0.071 0.929 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.394 -3.392 -12.188 15.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.027 3.973 3 C -0.221 4.221 4 N -0.312 5.312 5 C 0.094 3.906 6 C -0.557 4.557 7 H 0.094 0.906 8 C -0.130 4.130 9 N -0.537 5.537 10 Si 0.697 3.303 11 H -0.202 1.202 12 H -0.210 1.210 13 H -0.189 1.189 14 C 0.325 3.675 15 O -0.413 6.413 16 C -0.235 4.235 17 C -0.086 4.086 18 C -0.120 4.120 19 C -0.169 4.169 20 C -0.015 4.015 21 O -0.308 6.308 22 C -0.015 4.015 23 C -0.183 4.183 24 H 0.096 0.904 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.099 0.901 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.056 0.944 32 H 0.044 0.956 33 H 0.073 0.927 34 H 0.143 0.857 35 H 0.133 0.867 36 H 0.154 0.846 37 H 0.077 0.923 38 H 0.094 0.906 39 H 0.075 0.925 40 H 0.106 0.894 41 H 0.072 0.928 42 H 0.107 0.893 43 H 0.089 0.911 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.529 -3.832 -11.489 15.411 hybrid contribution 0.086 1.066 0.390 1.138 sum 9.616 -2.766 -11.099 14.943 Atomic orbital electron populations 1.22131 0.94393 1.03147 1.01647 1.21119 0.95270 0.92925 0.88026 1.22176 1.01080 0.96575 1.02237 1.47976 1.51390 1.23888 1.07961 1.19629 0.97803 0.93584 0.79543 1.21323 1.04301 1.27416 1.02659 0.90560 1.24841 0.94785 0.96165 0.97256 1.69888 1.20211 1.44275 1.19357 0.86933 0.81373 0.81638 0.80318 1.20213 1.21042 1.18949 1.18451 0.78771 0.81176 0.89115 1.90568 1.56248 1.54738 1.39770 1.22907 1.04463 0.98796 0.97305 1.23530 0.92737 0.93572 0.98795 1.21198 0.99153 0.93036 0.98623 1.21960 0.96424 0.99886 0.98585 1.22570 0.99213 0.84089 0.95661 1.87854 1.28662 1.32287 1.82036 1.22535 0.83749 0.99392 0.95804 1.22207 1.01775 0.95603 0.98759 0.90418 0.93279 0.92368 0.90128 0.92755 0.92084 0.91584 0.94422 0.95636 0.92678 0.85702 0.86696 0.84580 0.92271 0.90593 0.92528 0.89355 0.92781 0.89257 0.91082 0.91793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.58 8.42 37.16 0.31 -2.26 16 2 C 0.13 2.06 3.16 -67.93 -0.21 1.84 16 3 C -0.16 -2.24 8.95 37.16 0.33 -1.90 16 4 N -0.58 -11.67 2.39 -168.85 -0.40 -12.08 16 5 C 0.22 5.12 3.77 -5.19 -0.02 5.10 16 6 C -0.52 -14.42 8.56 -34.44 -0.29 -14.72 16 7 H 0.08 2.33 7.79 -52.49 -0.41 1.92 16 8 C 0.07 2.05 5.47 -17.83 -0.10 1.95 16 9 N -0.90 -27.37 13.96 55.43 0.77 -26.60 16 10 Si 0.87 21.35 27.47 -169.99 -4.67 16.68 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16 14 C 0.53 10.62 7.43 -12.67 -0.09 10.52 16 15 O -0.53 -12.24 12.75 5.26 0.07 -12.17 16 16 C -0.21 -3.20 9.27 -37.81 -0.35 -3.55 16 17 C -0.07 -0.90 8.84 -36.13 -0.32 -1.22 16 18 C -0.10 -1.54 1.79 -91.60 -0.16 -1.70 16 19 C -0.13 -1.83 5.34 -26.59 -0.14 -1.97 16 20 C 0.06 0.85 6.84 37.21 0.25 1.11 16 21 O -0.39 -5.70 10.77 -35.23 -0.38 -6.08 16 22 C 0.06 0.82 6.84 37.21 0.25 1.07 16 23 C -0.15 -1.88 5.41 -26.59 -0.14 -2.02 16 24 H 0.08 1.50 7.29 -51.93 -0.38 1.13 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.06 1.06 8.10 -51.93 -0.42 0.64 16 27 H 0.08 1.05 5.20 -51.93 -0.27 0.78 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 1.01 6.80 -51.93 -0.35 0.65 16 31 H 0.04 0.98 6.54 -51.92 -0.34 0.64 16 32 H 0.03 0.58 5.76 -51.93 -0.30 0.28 16 33 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 34 H 0.13 1.51 5.89 -52.49 -0.31 1.20 16 35 H 0.12 1.21 8.06 -52.48 -0.42 0.78 16 36 H 0.14 2.61 4.75 -53.16 -0.25 2.36 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 342.23 15.07 5.16 5.16 Total: -1.00 -31.98 342.23 -7.41 -39.40 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -7.27 Total: 3.43 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: -0.69 Total: -7.74 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: 0.37 Total: -38.67 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -0.31 Total: -18.25 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.98 -7.41 -39.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491851882.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.721 kcal (2) G-P(sol) polarization free energy of solvation -31.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds