Wall clock time and date at job start Tue Mar 31 2020 05:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46835 * 2 1 4 4 N 1.46494 * 109.47313 * 120.00005 * 2 1 3 5 5 C 1.46505 * 120.00223 * 304.68782 * 4 2 1 6 6 C 1.50697 * 109.47015 * 270.00156 * 5 4 2 7 7 H 1.07991 * 120.00265 * 359.97438 * 6 5 4 8 8 C 1.37882 * 119.99719 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99796 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00023 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47255 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47024 * 119.99761 * 10 8 6 13 13 H 1.48498 * 109.47156 * 239.99706 * 10 8 6 14 14 C 1.34776 * 119.99951 * 124.68736 * 4 2 1 15 15 O 1.21610 * 119.99880 * 4.75111 * 14 4 2 16 16 C 1.47102 * 119.99905 * 184.74804 * 14 4 2 17 17 C 1.33000 * 119.99935 * 174.72989 * 16 14 4 18 18 C 1.50703 * 119.99642 * 179.72515 * 17 16 14 19 19 C 1.53183 * 109.53913 * 239.83366 * 18 17 16 20 20 C 1.53092 * 109.15661 * 183.15631 * 19 18 17 21 21 O 1.42903 * 109.41594 * 57.61399 * 20 19 18 22 22 C 1.42902 * 114.09264 * 298.83525 * 21 20 19 23 23 C 1.53088 * 109.41752 * 61.16460 * 22 21 20 24 24 H 1.09000 * 109.47029 * 299.99734 * 1 2 3 25 25 H 1.09001 * 109.47214 * 60.00240 * 1 2 3 26 26 H 1.09001 * 109.47006 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47495 * 240.00519 * 2 1 3 28 28 H 1.09004 * 109.46970 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47265 * 300.00372 * 3 2 1 30 30 H 1.09000 * 109.46655 * 60.00004 * 3 2 1 31 31 H 1.09008 * 109.46923 * 30.00261 * 5 4 2 32 32 H 1.09002 * 109.46996 * 149.99719 * 5 4 2 33 33 H 0.97002 * 120.00105 * 180.02562 * 9 8 6 34 34 H 1.07995 * 120.00167 * 354.73318 * 16 14 4 35 35 H 1.07995 * 119.99893 * 0.02562 * 17 16 14 36 36 H 1.08995 * 109.54590 * 0.10037 * 18 17 16 37 37 H 1.08999 * 109.52441 * 303.05920 * 19 18 17 38 38 H 1.08996 * 109.52330 * 63.25361 * 19 18 17 39 39 H 1.09001 * 109.48429 * 297.62293 * 20 19 18 40 40 H 1.09004 * 109.47759 * 177.59178 * 20 19 18 41 41 H 1.09003 * 109.48102 * 301.17594 * 22 21 20 42 42 H 1.09004 * 109.48105 * 181.14368 * 22 21 20 43 43 H 1.08998 * 109.52737 * 182.48395 * 23 22 21 44 44 H 1.09003 * 109.57504 * 62.32104 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.5818 -0.2528 2.5243 6 6 2.5336 0.7923 3.0467 7 1 3.3792 1.0994 2.4494 8 6 2.3247 1.3565 4.2874 9 7 1.2945 0.9828 5.0145 10 14 3.5048 2.6514 4.9352 11 1 4.5735 2.8930 3.9329 12 1 2.7650 3.9146 5.1850 13 1 4.1142 2.1757 6.2031 14 6 2.8693 -1.7287 1.0747 15 8 3.2993 -2.0375 -0.0201 16 6 3.2778 -2.4881 2.2664 17 6 4.0328 -3.5752 2.1357 18 6 4.4565 -4.3496 3.3571 19 6 5.9858 -4.3795 3.4399 20 6 6.4075 -5.2337 4.6383 21 8 5.8624 -6.5475 4.5004 22 6 4.4343 -6.5859 4.4653 23 6 3.9332 -5.7860 3.2600 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5137 -0.8900 28 1 3.1300 1.4426 0.0005 29 1 1.6766 1.9565 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 0.5794 0.1701 2.4562 32 1 1.5709 -1.1059 3.2027 33 1 1.1473 1.3800 5.8872 34 1 2.9647 -2.1630 3.2475 35 1 4.3463 -3.9001 1.1546 36 1 4.0509 -3.8734 4.2497 37 1 6.3918 -4.8103 2.5246 38 1 6.3637 -3.3648 3.5649 39 1 6.0353 -4.7802 5.5569 40 1 7.4952 -5.2937 4.6771 41 1 4.0363 -6.1501 5.3817 42 1 4.1004 -7.6199 4.3795 43 1 2.8433 -5.7771 3.2563 44 1 4.2969 -6.2448 2.3405 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491851885.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:41 Heat of formation + Delta-G solvation = -86.468308 kcal Electronic energy + Delta-G solvation = -22685.055656 eV Core-core repulsion = 19409.064810 eV Total energy + Delta-G solvation = -3275.990846 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.53458 -39.06765 -35.96346 -35.03321 -33.01946 -31.71881 -31.13651 -30.54933 -27.24757 -26.63698 -25.42918 -23.55337 -23.01374 -22.25085 -20.20245 -19.41109 -17.85170 -16.88435 -16.54200 -16.03502 -15.99057 -15.46969 -14.78437 -14.47270 -14.27302 -14.21208 -13.84339 -13.56484 -13.06322 -12.59945 -12.47361 -12.39205 -12.37460 -11.94960 -11.65227 -11.48778 -11.37652 -11.33710 -11.01991 -10.94654 -10.92414 -10.78765 -10.64515 -10.34340 -10.29505 -9.93778 -9.62094 -9.60813 -9.05824 -8.91352 -8.54631 -7.67124 -6.19126 -4.24695 1.93029 3.19606 3.28745 3.33342 3.81263 3.92197 4.04304 4.33230 4.74132 4.82706 4.83308 4.98569 5.13902 5.20817 5.29302 5.42596 5.43935 5.61100 5.62312 5.63631 5.71368 5.83286 5.84108 5.85185 5.95450 6.02684 6.10595 6.14417 6.20406 6.29898 6.39354 6.44837 6.71774 6.79887 6.86541 6.94958 7.05240 7.12168 7.23790 7.60666 7.77340 8.07106 8.37691 8.81069 9.04952 9.42271 10.87553 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.013408 B = 0.005151 C = 0.004127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.759067 B = 5434.713543 C = 6782.558027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.136 3.864 3 C -0.154 4.154 4 N -0.585 5.585 5 C 0.234 3.766 6 C -0.528 4.528 7 H 0.062 0.938 8 C 0.063 3.937 9 N -0.893 5.893 10 Si 0.893 3.107 11 H -0.272 1.272 12 H -0.283 1.283 13 H -0.283 1.283 14 C 0.544 3.456 15 O -0.583 6.583 16 C -0.178 4.178 17 C -0.094 4.094 18 C -0.063 4.063 19 C -0.147 4.147 20 C 0.061 3.939 21 O -0.387 6.387 22 C 0.061 3.939 23 C -0.147 4.147 24 H 0.067 0.933 25 H 0.058 0.942 26 H 0.050 0.950 27 H 0.084 0.916 28 H 0.051 0.949 29 H 0.047 0.953 30 H 0.077 0.923 31 H 0.040 0.960 32 H 0.038 0.962 33 H 0.264 0.736 34 H 0.137 0.863 35 H 0.119 0.881 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.052 0.948 40 H 0.093 0.907 41 H 0.051 0.949 42 H 0.092 0.908 43 H 0.076 0.924 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.135 -9.335 -1.606 9.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.033 3.967 3 C -0.212 4.212 4 N -0.314 5.314 5 C 0.114 3.886 6 C -0.567 4.567 7 H 0.080 0.920 8 C -0.139 4.139 9 N -0.532 5.532 10 Si 0.721 3.279 11 H -0.197 1.197 12 H -0.209 1.209 13 H -0.209 1.209 14 C 0.335 3.665 15 O -0.466 6.466 16 C -0.198 4.198 17 C -0.114 4.114 18 C -0.082 4.082 19 C -0.185 4.185 20 C -0.016 4.016 21 O -0.306 6.306 22 C -0.016 4.016 23 C -0.185 4.185 24 H 0.086 0.914 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.102 0.898 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.096 0.904 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.155 0.845 35 H 0.137 0.863 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.070 0.930 40 H 0.111 0.889 41 H 0.070 0.930 42 H 0.110 0.890 43 H 0.095 0.905 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.333 -9.575 -1.992 10.332 hybrid contribution 0.320 1.271 0.611 1.446 sum 3.653 -8.305 -1.381 9.177 Atomic orbital electron populations 1.22126 0.95666 1.01622 1.02226 1.20833 0.93442 0.93512 0.88958 1.22117 1.01230 0.95924 1.01964 1.48192 1.44275 1.29992 1.08940 1.19474 0.96267 0.95709 0.77155 1.21563 1.11164 1.22069 1.01923 0.91956 1.24930 0.95470 0.96914 0.96588 1.69932 1.28203 1.43052 1.11991 0.86512 0.81090 0.81431 0.78907 1.19676 1.20885 1.20903 1.18522 0.78759 0.80559 0.88702 1.90653 1.57043 1.70408 1.28543 1.23002 1.00888 0.96411 0.99501 1.23396 0.94881 0.94498 0.98657 1.20382 0.95534 0.95098 0.97154 1.22198 0.95369 1.01220 0.99726 1.22599 0.98815 0.83228 0.96947 1.87901 1.20342 1.27931 1.94382 1.22589 0.81108 1.00778 0.97115 1.22201 1.01547 0.95051 0.99676 0.91419 0.92339 0.93047 0.89788 0.93003 0.93364 0.90396 0.94240 0.94393 0.92661 0.84514 0.86291 0.90024 0.90829 0.90334 0.93002 0.88908 0.93039 0.88951 0.90526 0.90833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 9.08 37.16 0.34 -2.27 16 2 C 0.14 2.60 3.24 -67.93 -0.22 2.38 16 3 C -0.15 -2.84 8.60 37.16 0.32 -2.52 16 4 N -0.58 -12.52 2.39 -168.85 -0.40 -12.92 16 5 C 0.23 5.46 4.51 -5.19 -0.02 5.44 16 6 C -0.53 -13.45 7.85 -34.44 -0.27 -13.72 16 7 H 0.06 1.64 7.59 -52.49 -0.40 1.24 16 8 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 9 N -0.89 -24.14 13.29 55.43 0.74 -23.40 16 10 Si 0.89 20.39 29.54 -169.99 -5.02 15.37 16 11 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 13 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 14 C 0.54 11.79 7.61 -12.66 -0.10 11.70 16 15 O -0.58 -13.63 15.58 5.27 0.08 -13.55 16 16 C -0.18 -3.37 8.83 -37.80 -0.33 -3.71 16 17 C -0.09 -1.52 8.36 -36.12 -0.30 -1.82 16 18 C -0.06 -0.83 2.57 -91.58 -0.24 -1.07 16 19 C -0.15 -1.77 5.41 -26.59 -0.14 -1.91 16 20 C 0.06 0.66 6.84 37.21 0.25 0.92 16 21 O -0.39 -4.75 10.77 -35.23 -0.38 -5.13 16 22 C 0.06 0.64 6.84 37.20 0.25 0.90 16 23 C -0.15 -1.68 5.40 -26.59 -0.14 -1.82 16 24 H 0.07 1.19 6.53 -51.93 -0.34 0.85 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.08 1.64 6.94 -51.93 -0.36 1.28 16 28 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.08 1.57 6.92 -51.93 -0.36 1.21 16 31 H 0.04 0.96 6.19 -51.92 -0.32 0.64 16 32 H 0.04 0.92 5.97 -51.93 -0.31 0.61 16 33 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 34 H 0.14 2.70 6.00 -52.49 -0.32 2.38 16 35 H 0.12 1.98 7.50 -52.49 -0.39 1.59 16 36 H 0.08 1.11 7.81 -51.93 -0.41 0.71 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 350.95 15.07 5.29 5.29 Total: -1.00 -28.86 350.95 -7.81 -36.66 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -7.41 Total: 3.62 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: -0.70 Total: -5.96 kcal Atomic # 7 Polarization: -36.65 SS G_CDS: 0.33 Total: -36.32 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -0.30 Total: -18.67 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -28.86 -7.81 -36.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491851885.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.804 kcal (2) G-P(sol) polarization free energy of solvation -28.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds