Wall clock time and date at job start Tue Mar 31 2020 05:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47406 * 2 1 4 4 C 1.53005 * 109.46996 * 120.00603 * 2 1 3 5 5 N 1.46499 * 109.46459 * 273.70344 * 4 2 1 6 6 C 1.34777 * 119.99814 * 85.00877 * 5 4 2 7 7 O 1.21608 * 120.00157 * 359.97438 * 6 5 4 8 8 C 1.47108 * 119.99969 * 179.97438 * 6 5 4 9 9 C 1.32989 * 120.00038 * 183.40506 * 8 6 5 10 10 C 1.50709 * 119.99984 * 327.08110 * 9 8 6 11 11 C 1.53001 * 109.53877 * 208.96350 * 10 9 8 12 12 C 1.53169 * 109.54520 * 88.78053 * 10 9 8 13 13 C 1.53103 * 109.15706 * 183.23756 * 12 10 9 14 14 O 1.42908 * 109.48416 * 57.48095 * 13 12 10 15 15 C 1.42904 * 114.09509 * 298.88872 * 14 13 12 16 16 C 1.53097 * 109.41869 * 61.15650 * 15 14 13 17 17 C 1.50701 * 109.47037 * 153.70942 * 4 2 1 18 18 N 1.27937 * 120.00313 * 131.72587 * 17 4 2 19 19 Si 1.86799 * 119.99804 * 311.72270 * 17 4 2 20 20 H 1.48505 * 109.47373 * 94.96902 * 19 17 4 21 21 H 1.48498 * 109.47148 * 214.97025 * 19 17 4 22 22 H 1.48506 * 109.47422 * 334.97067 * 19 17 4 23 23 H 1.09007 * 109.46826 * 314.64447 * 1 2 3 24 24 H 1.08995 * 109.47179 * 74.64347 * 1 2 3 25 25 H 1.08993 * 109.46890 * 194.64606 * 1 2 3 26 26 H 1.09008 * 109.46961 * 240.00136 * 2 1 3 27 27 H 1.08997 * 109.47016 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.47214 * 300.00193 * 3 2 1 29 29 H 1.09001 * 109.46587 * 60.00100 * 3 2 1 30 30 H 1.08996 * 109.47224 * 33.70650 * 4 2 1 31 31 H 0.96998 * 120.00019 * 264.99552 * 5 4 2 32 32 H 1.07997 * 119.99797 * 3.39748 * 8 6 5 33 33 H 1.07997 * 120.00051 * 147.07507 * 9 8 6 34 34 H 1.09000 * 109.47617 * 63.35611 * 11 10 9 35 35 H 1.09006 * 109.46548 * 183.35327 * 11 10 9 36 36 H 1.09001 * 109.47114 * 303.34639 * 11 10 9 37 37 H 1.08996 * 109.52889 * 303.06087 * 12 10 9 38 38 H 1.09010 * 109.52257 * 63.24877 * 12 10 9 39 39 H 1.08992 * 109.41010 * 297.49760 * 13 12 10 40 40 H 1.09007 * 109.49299 * 177.50813 * 13 12 10 41 41 H 1.09001 * 109.47993 * 301.17602 * 15 14 13 42 42 H 1.09001 * 109.48912 * 181.14986 * 15 14 13 43 43 H 1.08999 * 109.52272 * 182.48623 * 16 15 14 44 44 H 1.09002 * 109.57003 * 62.32757 * 16 15 14 45 45 H 0.97004 * 120.00455 * 179.97438 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 2.1186 0.2272 2.3628 6 6 1.0268 0.4791 3.1118 7 8 -0.0237 -0.0807 2.8629 8 6 1.1058 1.4312 4.2304 9 6 0.0476 1.6290 5.0112 10 6 -1.3419 1.5379 4.4347 11 6 -2.2840 2.4496 5.2235 12 6 -1.8381 0.0913 4.5199 13 6 -3.2158 -0.0070 3.8594 14 8 -3.1285 0.4421 2.5055 15 6 -2.7156 1.8033 2.3679 16 6 -1.3169 1.9739 2.9665 17 6 3.4085 -1.2909 0.9769 18 7 4.3587 -1.0998 1.8120 19 14 3.7173 -2.2758 -0.5800 20 1 4.2686 -1.3821 -1.6300 21 1 4.6890 -3.3618 -0.2941 22 1 2.4398 -2.8667 -1.0536 23 1 -0.3633 0.7222 0.7312 24 1 -0.3633 0.2721 -0.9909 25 1 -0.3633 -0.9942 0.2598 26 1 1.8934 -0.5139 -0.8901 27 1 3.1301 1.4424 -0.0005 28 1 1.6768 1.9563 -0.8899 29 1 1.6768 1.9562 0.8900 30 1 1.3551 -1.5290 1.5074 31 1 2.9565 0.6738 2.5613 32 1 2.0232 1.9694 4.4176 33 1 0.1839 1.8550 6.0585 34 1 -1.9659 3.4860 5.1104 35 1 -3.2997 2.3378 4.8440 36 1 -2.2578 2.1742 6.2778 37 1 -1.1392 -0.5648 4.0011 38 1 -1.9118 -0.2076 5.5656 39 1 -3.9241 0.6169 4.4044 40 1 -3.5548 -1.0428 3.8775 41 1 -3.4173 2.4509 2.8934 42 1 -2.6942 2.0718 1.3117 43 1 -1.0183 3.0202 2.9022 44 1 -0.6063 1.3578 2.4155 45 1 5.2394 -1.4667 1.6370 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493031903.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:22 Heat of formation + Delta-G solvation = -4.481346 kcal Electronic energy + Delta-G solvation = -25040.265485 eV Core-core repulsion = 21754.174121 eV Total energy + Delta-G solvation = -3286.091364 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.186 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.93910 -40.16983 -38.36574 -36.33506 -35.55403 -34.05520 -32.40604 -31.73437 -28.79587 -28.52556 -27.94067 -25.33671 -24.31326 -23.40847 -22.11033 -21.03911 -20.56451 -19.07471 -18.16266 -17.72786 -17.30955 -16.78331 -16.48316 -16.28137 -15.95211 -15.54686 -15.37937 -15.16291 -14.83476 -14.74645 -14.64362 -14.23200 -13.84608 -13.46383 -13.37421 -13.15344 -12.99264 -12.79880 -12.67571 -12.51002 -12.34995 -12.21686 -11.93893 -11.86725 -11.72915 -11.59364 -11.44972 -11.21386 -10.90195 -10.37666 -10.12928 -9.96852 -9.63588 -9.51706 0.24599 0.63683 0.87876 1.29237 1.56702 1.71838 2.28864 2.50073 3.22429 3.28428 3.77236 3.82989 3.88391 4.04431 4.06689 4.13775 4.15988 4.37902 4.44123 4.53278 4.54861 4.58143 4.60268 4.70614 4.76786 4.80212 4.85400 4.90627 4.92409 5.00678 5.01614 5.03894 5.12978 5.15987 5.22419 5.24781 5.31101 5.35222 5.41763 5.43067 5.57626 5.60385 5.86871 6.05771 6.61391 6.67499 6.72491 7.51229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.106 4.106 3 C -0.143 4.143 4 C 0.179 3.821 5 N -0.702 5.702 6 C 0.534 3.466 7 O -0.505 6.505 8 C -0.235 4.235 9 C -0.036 4.036 10 C -0.032 4.032 11 C -0.148 4.148 12 C -0.163 4.163 13 C 0.067 3.933 14 O -0.374 6.374 15 C 0.068 3.932 16 C -0.185 4.185 17 C -0.016 4.016 18 N -0.627 5.627 19 Si 0.933 3.067 20 H -0.234 1.234 21 H -0.247 1.247 22 H -0.226 1.226 23 H 0.070 0.930 24 H 0.051 0.949 25 H 0.062 0.938 26 H 0.073 0.927 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.115 0.885 31 H 0.408 0.592 32 H 0.129 0.871 33 H 0.126 0.874 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.129 0.871 38 H 0.055 0.945 39 H 0.040 0.960 40 H 0.087 0.913 41 H 0.040 0.960 42 H 0.085 0.915 43 H 0.054 0.946 44 H 0.134 0.866 45 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.828 1.179 -0.306 3.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.127 4.127 3 C -0.201 4.201 4 C 0.073 3.927 5 N -0.353 5.353 6 C 0.327 3.673 7 O -0.387 6.387 8 C -0.256 4.256 9 C -0.056 4.056 10 C -0.032 4.032 11 C -0.205 4.205 12 C -0.199 4.199 13 C -0.009 4.009 14 O -0.293 6.293 15 C -0.009 4.009 16 C -0.221 4.221 17 C -0.265 4.265 18 N -0.240 5.240 19 Si 0.748 3.252 20 H -0.157 1.157 21 H -0.170 1.170 22 H -0.148 1.148 23 H 0.088 0.912 24 H 0.070 0.930 25 H 0.081 0.919 26 H 0.091 0.909 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.133 0.867 31 H 0.244 0.756 32 H 0.147 0.853 33 H 0.143 0.857 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.146 0.854 38 H 0.074 0.926 39 H 0.058 0.942 40 H 0.105 0.895 41 H 0.058 0.942 42 H 0.103 0.897 43 H 0.073 0.927 44 H 0.151 0.849 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 2.311 0.688 -0.471 2.457 hybrid contribution 1.005 0.279 0.291 1.082 sum 3.315 0.967 -0.180 3.458 Atomic orbital electron populations 1.21938 0.92795 1.03547 1.01765 1.21553 0.97863 0.97054 0.96187 1.21799 1.00605 0.95366 1.02312 1.20383 0.93058 0.92258 0.87001 1.45804 1.13678 1.44943 1.30882 1.18657 0.83451 0.83722 0.81511 1.90556 1.27312 1.52004 1.68834 1.22527 1.01324 1.02624 0.99156 1.23847 0.94022 0.90019 0.97712 1.19682 0.91755 0.96460 0.95297 1.22023 0.99503 0.99181 0.99771 1.22748 0.99345 0.97048 1.00802 1.22477 0.95830 0.99477 0.83163 1.87931 1.88121 1.27481 1.25720 1.22437 0.94308 0.83469 1.00657 1.23312 1.00989 1.01802 0.95982 1.30744 0.96310 0.97324 1.02153 1.68010 1.04748 1.20057 1.31221 0.85640 0.83263 0.79806 0.76457 1.15723 1.16995 1.14814 0.91156 0.93019 0.91896 0.90868 0.92963 0.92374 0.92054 0.86704 0.75577 0.85298 0.85653 0.92523 0.91919 0.92437 0.85369 0.92622 0.94173 0.89530 0.94209 0.89689 0.92735 0.84933 0.84195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.07 8.22 37.16 0.31 0.24 16 2 C -0.11 0.09 2.63 -90.62 -0.24 -0.15 16 3 C -0.14 0.15 8.54 37.16 0.32 0.47 16 4 C 0.18 -0.10 2.14 -69.08 -0.15 -0.24 16 5 N -0.70 0.36 3.24 -56.12 -0.18 0.18 16 6 C 0.53 0.36 5.87 -12.66 -0.07 0.29 16 7 O -0.51 -1.21 7.00 5.27 0.04 -1.18 16 8 C -0.24 0.09 9.36 -37.80 -0.35 -0.26 16 9 C -0.04 0.01 8.57 -36.12 -0.31 -0.30 16 10 C -0.03 -0.03 0.50 -155.48 -0.08 -0.10 16 11 C -0.15 -0.01 7.91 37.16 0.29 0.28 16 12 C -0.16 -0.31 4.58 -26.59 -0.12 -0.44 16 13 C 0.07 0.17 6.57 37.21 0.24 0.41 16 14 O -0.37 -1.62 10.77 -35.23 -0.38 -2.00 16 15 C 0.07 0.16 6.57 37.21 0.24 0.40 16 16 C -0.18 -0.27 4.06 -26.59 -0.11 -0.38 16 17 C -0.02 0.02 5.39 -13.90 -0.07 -0.05 16 18 N -0.63 0.44 12.59 56.22 0.71 1.15 16 19 Si 0.93 -1.66 27.18 -169.99 -4.62 -6.28 16 20 H -0.23 0.31 7.11 56.52 0.40 0.72 16 21 H -0.25 0.22 7.11 56.52 0.40 0.63 16 22 H -0.23 0.32 7.11 56.52 0.40 0.73 16 23 H 0.07 0.12 5.11 -51.93 -0.27 -0.14 16 24 H 0.05 0.01 8.14 -51.93 -0.42 -0.42 16 25 H 0.06 0.08 7.75 -51.93 -0.40 -0.32 16 26 H 0.07 -0.13 5.39 -51.92 -0.28 -0.41 16 27 H 0.05 -0.07 8.14 -51.93 -0.42 -0.49 16 28 H 0.06 -0.06 8.14 -51.93 -0.42 -0.49 16 29 H 0.06 -0.03 6.98 -51.93 -0.36 -0.40 16 30 H 0.12 0.03 7.07 -51.93 -0.37 -0.34 16 31 H 0.41 -0.49 7.85 -40.82 -0.32 -0.81 16 32 H 0.13 -0.28 8.06 -52.49 -0.42 -0.70 16 33 H 0.13 -0.22 8.06 -52.49 -0.42 -0.64 16 34 H 0.06 -0.01 8.14 -51.93 -0.42 -0.43 16 35 H 0.06 0.04 5.03 -51.93 -0.26 -0.22 16 36 H 0.06 -0.03 8.14 -51.93 -0.42 -0.45 16 37 H 0.13 0.47 4.53 -37.14 -0.17 0.30 16 38 H 0.06 0.07 8.14 -51.92 -0.42 -0.35 16 39 H 0.04 0.07 6.53 -51.93 -0.34 -0.27 16 40 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 41 H 0.04 0.07 6.68 -51.93 -0.35 -0.28 16 42 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 43 H 0.05 0.06 8.14 -51.93 -0.42 -0.36 16 44 H 0.13 0.26 1.62 -38.40 -0.06 0.20 16 45 H 0.34 -0.69 8.23 -40.82 -0.34 -1.02 16 LS Contribution 325.19 15.07 4.90 4.90 Total: 0.00 -2.99 325.19 -6.59 -9.58 By element: Atomic # 1 Polarization: 0.45 SS G_CDS: -6.96 Total: -6.51 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -0.10 Total: 0.16 kcal Atomic # 7 Polarization: 0.80 SS G_CDS: 0.53 Total: 1.33 kcal Atomic # 8 Polarization: -2.83 SS G_CDS: -0.34 Total: -3.17 kcal Atomic # 14 Polarization: -1.66 SS G_CDS: -4.62 Total: -6.28 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -2.99 -6.59 -9.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493031903.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.103 kcal (2) G-P(sol) polarization free energy of solvation -2.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds