Wall clock time and date at job start Tue Mar 31 2020 05:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.46977 * 2 1 4 4 N 1.46502 * 109.47060 * 180.02562 * 3 2 1 5 5 C 1.36816 * 119.99737 * 87.14741 * 4 3 2 6 6 H 1.08001 * 119.99784 * 194.80688 * 5 4 3 7 7 C 1.39066 * 120.00420 * 14.53172 * 5 4 3 8 8 N 1.31353 * 120.00109 * 33.37186 * 7 5 4 9 9 Si 1.86800 * 120.00364 * 213.37434 * 7 5 4 10 10 H 1.48504 * 109.46941 * 59.99934 * 9 7 5 11 11 H 1.48504 * 109.47323 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47113 * 299.99817 * 9 7 5 13 13 C 1.34776 * 119.99998 * 267.14571 * 4 3 2 14 14 O 1.21663 * 119.99976 * 0.02562 * 13 4 3 15 15 C 1.46954 * 120.00118 * 180.02562 * 13 4 3 16 16 C 1.33118 * 120.00004 * 138.52633 * 15 13 4 17 17 C 1.50695 * 120.00583 * 325.66505 * 16 15 13 18 18 C 1.52999 * 109.54557 * 229.97193 * 17 16 15 19 19 C 1.53177 * 109.54718 * 109.69927 * 17 16 15 20 20 C 1.53089 * 109.16562 * 183.15357 * 19 17 16 21 21 O 1.42905 * 109.41543 * 57.60804 * 20 19 17 22 22 C 1.42896 * 114.10142 * 298.84540 * 21 20 19 23 23 C 1.53094 * 109.41669 * 61.15421 * 22 21 20 24 24 H 1.09005 * 109.47201 * 299.99552 * 1 2 3 25 25 H 1.08996 * 109.47775 * 59.99737 * 1 2 3 26 26 H 1.09008 * 109.47216 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47201 * 240.00448 * 2 1 3 28 28 H 1.08996 * 109.47775 * 120.00263 * 2 1 3 29 29 H 1.09002 * 109.47007 * 60.00676 * 3 2 1 30 30 H 1.08992 * 109.47322 * 300.00247 * 3 2 1 31 31 H 0.97000 * 120.00196 * 180.02562 * 8 7 5 32 32 H 1.08004 * 119.99816 * 318.53826 * 15 13 4 33 33 H 1.08001 * 119.99556 * 145.65779 * 16 15 13 34 34 H 1.08995 * 109.47294 * 62.51908 * 18 17 16 35 35 H 1.09000 * 109.47119 * 182.52537 * 18 17 16 36 36 H 1.09005 * 109.46853 * 302.52313 * 18 17 16 37 37 H 1.08995 * 109.52664 * 303.06280 * 19 17 16 38 38 H 1.09000 * 109.51859 * 63.24869 * 19 17 16 39 39 H 1.09000 * 109.48373 * 297.62695 * 20 19 17 40 40 H 1.09002 * 109.49294 * 177.59754 * 20 19 17 41 41 H 1.08997 * 109.47853 * 301.17503 * 22 21 20 42 42 H 1.08996 * 109.49728 * 181.14448 * 22 21 20 43 43 H 1.09002 * 109.52757 * 182.49191 * 23 22 21 44 44 H 1.08996 * 109.57453 * 62.32516 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1885 1.3837 -1.1843 6 1 5.2416 1.1443 -1.1884 7 6 3.5260 1.6267 -2.3827 8 7 2.5398 2.4933 -2.4240 9 14 4.0386 0.7207 -3.9338 10 1 3.8821 -0.7416 -3.7274 11 1 3.1821 1.1548 -5.0666 12 1 5.4587 1.0282 -4.2402 13 6 4.1793 1.5005 1.1649 14 8 3.5714 1.5523 2.2175 15 6 5.6489 1.5011 1.1642 16 6 6.3145 2.3066 1.9889 17 6 5.7576 3.6653 2.3277 18 6 6.8406 4.7271 2.1259 19 6 5.2899 3.6784 3.7862 20 6 4.6545 5.0359 4.0980 21 8 3.5714 5.2719 3.1961 22 6 3.9567 5.3176 1.8208 23 6 4.5641 3.9714 1.4175 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 1.6767 1.9563 0.8901 30 1 1.6766 1.9563 -0.8899 31 1 2.0775 2.6626 -3.2598 32 1 6.1888 0.8481 0.4945 33 1 7.2536 1.9863 2.4154 34 1 7.1369 4.7492 1.0773 35 1 6.4504 5.7033 2.4139 36 1 7.7060 4.4852 2.7430 37 1 4.5550 2.8883 3.9402 38 1 6.1438 3.5162 4.4440 39 1 5.4010 5.8217 3.9830 40 1 4.2813 5.0361 5.1222 41 1 4.6942 6.1070 1.6760 42 1 3.0811 5.5205 1.2043 43 1 4.8990 4.0186 0.3813 44 1 3.8151 3.1866 1.5228 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493306694.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:09 Heat of formation + Delta-G solvation = -40.635288 kcal Electronic energy + Delta-G solvation = -24266.136468 eV Core-core repulsion = 20992.133091 eV Total energy + Delta-G solvation = -3274.003377 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.06540 -38.32890 -35.68716 -34.70628 -32.71348 -31.55801 -30.78542 -30.40097 -27.48199 -26.05954 -24.89445 -23.72805 -23.02928 -21.61386 -20.17865 -18.91278 -18.05210 -16.74490 -16.22651 -15.59159 -15.32067 -14.65294 -14.64878 -14.36952 -14.24719 -13.96211 -13.72975 -13.16236 -13.08660 -12.62179 -12.45355 -12.11428 -11.83045 -11.62852 -11.55796 -11.46966 -11.38154 -10.99130 -10.88728 -10.66833 -10.61906 -10.40398 -10.38374 -10.11727 -10.00703 -9.68432 -9.47447 -9.07549 -8.81711 -8.44514 -8.00809 -7.66983 -6.45056 -3.91379 2.19025 3.07521 3.17628 3.21160 4.00243 4.13222 4.38377 4.82893 5.01994 5.14171 5.19946 5.38921 5.58951 5.64014 5.66726 5.73836 5.84205 5.86593 5.89713 6.01138 6.03212 6.09834 6.12526 6.20582 6.27692 6.33712 6.45149 6.57445 6.58639 6.63587 6.70023 6.75565 6.88555 6.93228 7.03642 7.13611 7.25976 7.31438 7.38611 7.59404 7.71040 7.79601 8.36928 9.01558 9.50310 9.92742 10.47254 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017949 B = 0.006570 C = 0.005845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.574902 B = 4260.856312 C = 4789.196499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.128 4.128 3 C 0.081 3.919 4 N -0.426 5.426 5 C -0.337 4.337 6 H 0.099 0.901 7 C 0.045 3.955 8 N -0.838 5.838 9 Si 0.904 3.096 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.273 1.273 13 C 0.492 3.508 14 O -0.603 6.603 15 C -0.163 4.163 16 C -0.122 4.122 17 C -0.024 4.024 18 C -0.138 4.138 19 C -0.143 4.143 20 C 0.063 3.937 21 O -0.383 6.383 22 C 0.068 3.932 23 C -0.186 4.186 24 H 0.049 0.951 25 H 0.052 0.948 26 H 0.043 0.957 27 H 0.057 0.943 28 H 0.047 0.953 29 H 0.053 0.947 30 H 0.136 0.864 31 H 0.272 0.728 32 H 0.123 0.877 33 H 0.110 0.890 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.051 0.949 37 H 0.091 0.909 38 H 0.059 0.941 39 H 0.042 0.958 40 H 0.083 0.917 41 H 0.037 0.963 42 H 0.088 0.912 43 H 0.072 0.928 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.311 2.280 4.386 6.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.166 4.166 3 C -0.042 4.042 4 N -0.141 5.141 5 C -0.465 4.465 6 H 0.116 0.884 7 C -0.161 4.161 8 N -0.474 5.474 9 Si 0.730 3.270 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.198 1.198 13 C 0.285 3.715 14 O -0.494 6.494 15 C -0.183 4.183 16 C -0.142 4.142 17 C -0.024 4.024 18 C -0.195 4.195 19 C -0.181 4.181 20 C -0.014 4.014 21 O -0.302 6.302 22 C -0.008 4.008 23 C -0.222 4.222 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.152 0.848 31 H 0.083 0.917 32 H 0.141 0.859 33 H 0.128 0.872 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.110 0.890 38 H 0.078 0.922 39 H 0.060 0.940 40 H 0.101 0.899 41 H 0.056 0.944 42 H 0.106 0.894 43 H 0.091 0.909 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.660 2.427 4.746 6.467 hybrid contribution 0.750 -0.597 -1.142 1.491 sum 4.411 1.830 3.604 5.983 Atomic orbital electron populations 1.21647 0.96664 1.00307 1.01392 1.21716 0.94605 0.99340 1.00973 1.22118 0.80977 0.95739 1.05394 1.43833 1.05406 1.59875 1.04945 1.19444 0.96011 1.48152 0.82855 0.88381 1.25055 0.96733 0.95239 0.99121 1.69738 1.23393 1.26504 1.27800 0.86351 0.78880 0.80777 0.80972 1.19867 1.20880 1.19782 1.18013 0.87483 0.81797 0.84162 1.90665 1.69185 1.58086 1.31421 1.22710 0.95083 1.02281 0.98247 1.23066 0.99691 0.94231 0.97225 1.19546 0.94888 0.92509 0.95458 1.21896 0.97795 0.98089 1.01706 1.22272 1.01045 0.99150 0.95642 1.22521 0.89641 0.95783 0.93427 1.87892 1.33349 1.92578 1.16383 1.22539 0.99587 0.96555 0.82158 1.23203 0.99797 1.00365 0.98866 0.93201 0.92911 0.93791 0.92470 0.93393 0.92860 0.84788 0.91725 0.85898 0.87188 0.92470 0.92583 0.93010 0.89036 0.92186 0.94005 0.89863 0.94437 0.89425 0.90889 0.85017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 9.91 37.16 0.37 -2.13 16 2 C -0.13 -2.70 6.25 -26.73 -0.17 -2.87 16 3 C 0.08 1.92 5.01 -4.04 -0.02 1.90 16 4 N -0.43 -10.33 2.54 -119.13 -0.30 -10.63 16 5 C -0.34 -8.20 9.09 -15.02 -0.14 -8.34 16 6 H 0.10 2.30 6.34 -52.49 -0.33 1.97 16 7 C 0.04 1.07 4.93 -17.45 -0.09 0.99 16 8 N -0.84 -20.66 10.79 55.50 0.60 -20.06 16 9 Si 0.90 18.73 29.66 -169.99 -5.04 13.69 16 10 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 11 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 12 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 13 C 0.49 11.65 4.09 -12.73 -0.05 11.59 16 14 O -0.60 -15.49 13.36 5.22 0.07 -15.42 16 15 C -0.16 -3.31 8.16 -37.84 -0.31 -3.62 16 16 C -0.12 -2.18 8.56 -36.09 -0.31 -2.49 16 17 C -0.02 -0.42 0.52 -155.48 -0.08 -0.50 16 18 C -0.14 -1.98 7.91 37.16 0.29 -1.68 16 19 C -0.14 -2.41 4.87 -26.59 -0.13 -2.54 16 20 C 0.06 0.99 6.57 37.20 0.24 1.24 16 21 O -0.38 -7.31 10.77 -35.23 -0.38 -7.69 16 22 C 0.07 1.26 6.57 37.21 0.24 1.50 16 23 C -0.19 -3.77 3.55 -26.59 -0.09 -3.86 16 24 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 26 H 0.04 0.68 8.14 -51.92 -0.42 0.25 16 27 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.05 1.32 7.34 -51.93 -0.38 0.94 16 30 H 0.14 3.34 4.67 -51.93 -0.24 3.10 16 31 H 0.27 6.35 8.31 -40.82 -0.34 6.01 16 32 H 0.12 2.33 7.08 -52.48 -0.37 1.96 16 33 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.76 5.02 -51.93 -0.26 0.50 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.09 1.85 6.76 -51.93 -0.35 1.50 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.04 0.58 6.55 -51.93 -0.34 0.24 16 40 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 41 H 0.04 0.61 6.66 -51.93 -0.35 0.27 16 42 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 43 H 0.07 1.59 8.11 -51.93 -0.42 1.17 16 44 H 0.13 3.14 3.13 -57.39 -0.18 2.96 16 LS Contribution 333.87 15.07 5.03 5.03 Total: -1.00 -27.15 333.87 -7.27 -34.41 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -7.01 Total: 11.48 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: -0.23 Total: -10.81 kcal Atomic # 7 Polarization: -30.99 SS G_CDS: 0.30 Total: -30.69 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: -0.31 Total: -23.11 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.04 Total: 13.69 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -27.15 -7.27 -34.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493306694.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.221 kcal (2) G-P(sol) polarization free energy of solvation -27.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds