Wall clock time and date at job start Tue Mar 31 2020 05:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47016 * 2 1 4 4 N 1.46500 * 109.46957 * 184.63196 * 3 2 1 5 5 C 1.36820 * 119.99902 * 95.28893 * 4 3 2 6 6 H 1.07996 * 119.99600 * 316.43285 * 5 4 3 7 7 C 1.39075 * 119.99999 * 136.70856 * 5 4 3 8 8 N 1.31346 * 119.99799 * 159.94273 * 7 5 4 9 9 Si 1.86805 * 119.99927 * 339.94153 * 7 5 4 10 10 H 1.48493 * 109.47205 * 94.25188 * 9 7 5 11 11 H 1.48500 * 109.47004 * 214.25461 * 9 7 5 12 12 H 1.48504 * 109.46989 * 334.25466 * 9 7 5 13 13 C 1.34773 * 120.00046 * 275.29143 * 4 3 2 14 14 O 1.21662 * 119.99832 * 180.02562 * 13 4 3 15 15 C 1.46945 * 120.00308 * 359.97438 * 13 4 3 16 16 C 1.33123 * 120.00427 * 180.02562 * 15 13 4 17 17 C 1.50698 * 120.00117 * 179.97438 * 16 15 13 18 18 C 1.52999 * 109.54788 * 0.02562 * 17 16 15 19 19 C 1.53178 * 109.54563 * 239.82125 * 17 16 15 20 20 C 1.53106 * 109.15760 * 183.24308 * 19 17 16 21 21 O 1.42901 * 109.48790 * 57.47782 * 20 19 17 22 22 C 1.42908 * 114.09591 * 298.89044 * 21 20 19 23 23 C 1.53088 * 109.41567 * 61.15658 * 22 21 20 24 24 H 1.09007 * 109.46830 * 184.75711 * 1 2 3 25 25 H 1.08992 * 109.47365 * 304.76038 * 1 2 3 26 26 H 1.09001 * 109.46807 * 64.76110 * 1 2 3 27 27 H 1.09000 * 109.47363 * 240.00029 * 2 1 3 28 28 H 1.08997 * 109.46830 * 120.00297 * 2 1 3 29 29 H 1.08998 * 109.46681 * 64.63435 * 3 2 1 30 30 H 1.08998 * 109.47362 * 304.63365 * 3 2 1 31 31 H 0.96999 * 119.99643 * 179.97438 * 8 7 5 32 32 H 1.07999 * 119.99822 * 0.02562 * 15 13 4 33 33 H 1.07999 * 119.99752 * 359.97438 * 16 15 13 34 34 H 1.09004 * 109.46897 * 59.99267 * 18 17 16 35 35 H 1.08993 * 109.47751 * 179.97438 * 18 17 16 36 36 H 1.09003 * 109.46740 * 299.99843 * 18 17 16 37 37 H 1.09002 * 109.52271 * 303.05986 * 19 17 16 38 38 H 1.08996 * 109.52139 * 63.25041 * 19 17 16 39 39 H 1.09001 * 109.40563 * 297.49367 * 20 19 17 40 40 H 1.09004 * 109.48887 * 177.50924 * 20 19 17 41 41 H 1.08999 * 109.47876 * 301.17286 * 22 21 20 42 42 H 1.08996 * 109.48995 * 181.14859 * 22 21 20 43 43 H 1.09005 * 109.52137 * 182.48874 * 23 22 21 44 44 H 1.08993 * 109.57362 * 62.33303 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5007 1.4440 -0.1115 5 6 4.0931 1.5856 -1.3367 6 1 3.7108 1.0412 -2.1874 7 6 5.1910 2.4263 -1.4852 8 7 5.9955 2.2804 -2.5132 9 14 5.5216 3.7628 -0.2227 10 1 6.4750 3.2559 0.7967 11 1 6.1046 4.9494 -0.8990 12 1 4.2479 4.1456 0.4379 13 6 4.2610 1.3058 0.9926 14 8 5.4741 1.3075 0.9000 15 6 3.6249 1.1542 2.3086 16 6 4.3758 1.0182 3.3993 17 6 3.7234 0.8633 4.7489 18 6 2.2021 0.8945 4.5886 19 6 4.1660 2.0072 5.6664 20 6 3.5631 1.7971 7.0580 21 8 3.9697 0.5251 7.5666 22 6 3.5414 -0.5842 6.7740 23 6 4.1452 -0.4710 5.3718 24 1 -0.3633 -1.0242 0.0852 25 1 -0.3634 0.5859 0.8442 26 1 -0.3633 0.4382 -0.9296 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.7460 1.9317 0.9286 30 1 1.6105 1.9798 -0.8455 31 1 6.7610 2.8670 -2.6170 32 1 2.5480 1.1531 2.3908 33 1 5.4527 1.0189 3.3170 34 1 1.8885 0.0780 3.9381 35 1 1.7314 0.7820 5.5652 36 1 1.9027 1.8455 4.1480 37 1 5.2536 2.0155 5.7395 38 1 3.8202 2.9566 5.2577 39 1 2.4757 1.8309 6.9904 40 1 3.9104 2.5842 7.7274 41 1 2.4538 -0.5816 6.7028 42 1 3.8729 -1.5128 7.2387 43 1 3.7845 -1.2923 4.7525 44 1 5.2323 -0.5148 5.4377 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493306696.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:11 Heat of formation + Delta-G solvation = -66.235157 kcal Electronic energy + Delta-G solvation = -23310.805807 eV Core-core repulsion = 20035.692336 eV Total energy + Delta-G solvation = -3275.113471 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.11856 -38.86479 -36.04695 -35.25088 -32.91157 -31.54283 -31.26466 -31.03721 -27.74074 -26.26564 -25.51684 -23.92274 -23.69342 -21.57212 -20.79605 -19.10777 -17.95615 -17.48189 -16.33447 -16.11942 -15.78722 -15.25805 -14.99220 -14.68184 -14.55625 -14.25859 -13.79649 -13.74100 -13.21397 -12.84057 -12.60350 -12.52384 -12.23839 -12.10813 -11.99854 -11.73667 -11.55303 -11.41192 -11.39545 -11.05378 -10.83584 -10.73233 -10.67966 -10.33651 -10.29465 -10.20641 -9.92291 -9.55140 -8.90088 -8.47356 -8.45479 -7.54683 -6.20502 -3.93416 2.01160 3.42002 3.48115 3.66391 3.74360 4.29713 4.40572 4.59250 4.67743 4.68690 4.74494 4.91656 5.08459 5.10523 5.15917 5.23165 5.33606 5.39850 5.42921 5.47335 5.55301 5.59929 5.63293 5.63988 5.81052 5.81557 5.85589 5.86971 5.99497 6.07761 6.13323 6.15352 6.19964 6.25954 6.30827 6.54837 6.73856 6.89330 6.93364 7.04866 7.85989 8.04891 8.81511 8.98217 9.44006 9.89414 10.85313 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017792 B = 0.005533 C = 0.004609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.339618 B = 5058.944976 C = 6072.966382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.140 4.140 3 C 0.104 3.896 4 N -0.455 5.455 5 C -0.349 4.349 6 H 0.093 0.907 7 C 0.094 3.906 8 N -0.863 5.863 9 Si 0.908 3.092 10 H -0.255 1.255 11 H -0.306 1.306 12 H -0.280 1.280 13 C 0.469 3.531 14 O -0.552 6.552 15 C -0.186 4.186 16 C -0.101 4.101 17 C -0.033 4.033 18 C -0.151 4.151 19 C -0.143 4.143 20 C 0.061 3.939 21 O -0.385 6.385 22 C 0.060 3.940 23 C -0.141 4.141 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.077 0.923 31 H 0.272 0.728 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.052 0.948 40 H 0.092 0.908 41 H 0.052 0.948 42 H 0.092 0.908 43 H 0.076 0.924 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.691 -2.805 16.510 19.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.179 4.179 3 C -0.020 4.020 4 N -0.175 5.175 5 C -0.475 4.475 6 H 0.111 0.889 7 C -0.115 4.115 8 N -0.497 5.497 9 Si 0.738 3.262 10 H -0.180 1.180 11 H -0.235 1.235 12 H -0.206 1.206 13 C 0.261 3.739 14 O -0.437 6.437 15 C -0.207 4.207 16 C -0.122 4.122 17 C -0.033 4.033 18 C -0.208 4.208 19 C -0.181 4.181 20 C -0.016 4.016 21 O -0.304 6.304 22 C -0.016 4.016 23 C -0.179 4.179 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.139 0.861 33 H 0.140 0.860 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.070 0.930 40 H 0.110 0.890 41 H 0.070 0.930 42 H 0.110 0.890 43 H 0.095 0.905 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.838 -2.775 16.460 19.376 hybrid contribution -0.022 0.697 0.051 0.699 sum -9.860 -2.077 16.512 19.344 Atomic orbital electron populations 1.21711 0.96105 1.01099 1.01565 1.21963 0.94964 0.98340 1.02619 1.21664 0.83383 0.95696 1.01267 1.43547 1.03681 1.63588 1.06696 1.18784 1.14611 1.28005 0.86082 0.88942 1.25316 0.94152 0.96548 0.95530 1.69737 1.12688 1.36500 1.30773 0.86431 0.79293 0.78420 0.82025 1.18020 1.23550 1.20586 1.18499 0.87589 0.82781 0.84996 1.90628 1.13650 1.53453 1.85932 1.23136 1.00177 1.03656 0.93726 1.23384 1.00391 0.96369 0.92040 1.19656 0.95330 0.95203 0.93145 1.22092 0.94407 1.02645 1.01647 1.22213 1.02173 0.98603 0.95073 1.22616 0.98468 0.85737 0.94756 1.87914 1.78067 1.14311 1.50058 1.22623 0.98286 0.89610 0.91100 1.22199 1.02207 0.97129 0.96384 0.93107 0.93076 0.92701 0.91294 0.92357 0.92643 0.90501 0.91798 0.86053 0.86004 0.91812 0.92429 0.91943 0.90653 0.90554 0.92989 0.89002 0.92978 0.88999 0.90508 0.90655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.91 37.16 0.37 -1.39 16 2 C -0.14 -2.21 6.12 -26.73 -0.16 -2.37 16 3 C 0.10 1.93 5.01 -4.04 -0.02 1.91 16 4 N -0.45 -11.11 2.15 -116.21 -0.25 -11.36 16 5 C -0.35 -10.00 9.64 -15.02 -0.14 -10.14 16 6 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 7 C 0.09 2.83 4.82 -17.45 -0.08 2.74 16 8 N -0.86 -26.77 13.95 55.50 0.77 -25.99 16 9 Si 0.91 24.74 24.94 -169.99 -4.24 20.50 16 10 H -0.25 -7.28 6.33 56.52 0.36 -6.93 16 11 H -0.31 -8.11 7.11 56.52 0.40 -7.71 16 12 H -0.28 -7.33 7.11 56.52 0.40 -6.93 16 13 C 0.47 11.53 5.81 -12.74 -0.07 11.45 16 14 O -0.55 -15.90 11.89 5.22 0.06 -15.84 16 15 C -0.19 -3.47 7.74 -37.84 -0.29 -3.76 16 16 C -0.10 -1.70 8.35 -36.09 -0.30 -2.00 16 17 C -0.03 -0.41 0.74 -155.48 -0.12 -0.53 16 18 C -0.15 -1.61 6.58 37.16 0.24 -1.37 16 19 C -0.14 -1.65 4.91 -26.58 -0.13 -1.78 16 20 C 0.06 0.61 6.57 37.21 0.24 0.85 16 21 O -0.38 -4.45 10.77 -35.23 -0.38 -4.83 16 22 C 0.06 0.59 6.57 37.20 0.24 0.84 16 23 C -0.14 -1.59 4.90 -26.59 -0.13 -1.72 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.06 0.90 7.54 -51.93 -0.39 0.51 16 29 H 0.06 0.90 6.41 -51.93 -0.33 0.57 16 30 H 0.08 1.41 8.00 -51.93 -0.42 0.99 16 31 H 0.27 7.95 8.31 -40.82 -0.34 7.61 16 32 H 0.12 1.90 3.80 -52.49 -0.20 1.70 16 33 H 0.12 2.31 7.49 -52.49 -0.39 1.92 16 34 H 0.06 0.68 7.51 -51.93 -0.39 0.29 16 35 H 0.06 0.52 5.02 -51.93 -0.26 0.26 16 36 H 0.06 0.68 7.50 -51.93 -0.39 0.29 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.05 0.46 6.61 -51.93 -0.34 0.12 16 40 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.05 0.45 6.60 -51.93 -0.34 0.11 16 42 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 336.18 15.07 5.07 5.07 Total: -1.00 -34.20 336.18 -6.61 -40.81 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -7.29 Total: -1.09 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: -0.36 Total: -7.27 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: 0.52 Total: -37.35 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -0.32 Total: -20.67 kcal Atomic # 14 Polarization: 24.74 SS G_CDS: -4.24 Total: 20.50 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.20 -6.61 -40.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493306696.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.426 kcal (2) G-P(sol) polarization free energy of solvation -34.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds