Wall clock time and date at job start Tue Mar 31 2020 05:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47202 * 2 1 4 4 H 1.09001 * 109.47284 * 55.00621 * 3 2 1 5 5 C 1.50710 * 109.46924 * 175.00344 * 3 2 1 6 6 H 1.07996 * 119.99987 * 120.00445 * 5 3 2 7 7 C 1.37879 * 119.99791 * 299.99890 * 5 3 2 8 8 N 1.31513 * 119.99981 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 119.99889 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47217 * 89.99972 * 9 7 5 11 11 H 1.48495 * 109.47440 * 210.00553 * 9 7 5 12 12 H 1.48499 * 109.47085 * 330.00638 * 9 7 5 13 13 N 1.46500 * 109.47583 * 295.00216 * 3 2 1 14 14 C 1.34780 * 119.99724 * 84.99928 * 13 3 2 15 15 O 1.21611 * 120.00073 * 359.97438 * 14 13 3 16 16 C 1.47096 * 119.99599 * 180.02562 * 14 13 3 17 17 C 1.32995 * 120.00017 * 183.69038 * 16 14 13 18 18 C 1.50705 * 119.99790 * 33.08577 * 17 16 14 19 19 C 1.53002 * 109.54195 * 147.39138 * 18 17 16 20 20 C 1.53179 * 109.54226 * 27.21373 * 18 17 16 21 21 C 1.53098 * 109.15740 * 183.23862 * 20 18 17 22 22 O 1.42904 * 109.48573 * 57.47585 * 21 20 18 23 23 C 1.42903 * 114.09568 * 298.88664 * 22 21 20 24 24 C 1.53089 * 109.41381 * 61.16373 * 23 22 21 25 25 H 1.09006 * 109.46720 * 299.99894 * 1 2 3 26 26 H 1.08999 * 109.47486 * 59.99457 * 1 2 3 27 27 H 1.08999 * 109.47585 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46720 * 240.00106 * 2 1 3 29 29 H 1.08999 * 109.47486 * 120.00543 * 2 1 3 30 30 H 0.97001 * 119.99899 * 180.02562 * 8 7 5 31 31 H 0.96996 * 119.99978 * 265.00481 * 13 3 2 32 32 H 1.08001 * 120.00685 * 3.69488 * 16 14 13 33 33 H 1.07996 * 120.00281 * 213.36862 * 17 16 14 34 34 H 1.08994 * 109.47444 * 73.11865 * 19 18 17 35 35 H 1.09000 * 109.46799 * 193.12642 * 19 18 17 36 36 H 1.09004 * 109.46809 * 313.12225 * 19 18 17 37 37 H 1.08997 * 109.52419 * 303.06236 * 20 18 17 38 38 H 1.09002 * 109.51872 * 63.24245 * 20 18 17 39 39 H 1.09004 * 109.40704 * 297.49256 * 21 20 18 40 40 H 1.09000 * 109.49424 * 177.50901 * 21 20 18 41 41 H 1.08994 * 109.48102 * 301.17234 * 23 22 21 42 42 H 1.09009 * 109.48493 * 181.14687 * 23 22 21 43 43 H 1.09003 * 109.52384 * 182.48416 * 24 23 22 44 44 H 1.08997 * 109.57727 * 62.32193 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5420 1.4442 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8782 1.2279 8 7 3.4063 0.3365 2.1728 9 14 6.0050 0.8797 1.3810 10 1 6.4429 2.1126 2.0835 11 1 6.4391 -0.3114 2.1542 12 1 6.6130 0.8393 0.0268 13 7 1.6524 2.0976 -1.2517 14 6 0.4351 2.6645 -1.3668 15 8 -0.3417 2.6319 -0.4317 16 6 0.0458 3.3218 -2.6238 17 6 -1.1258 3.9449 -2.7134 18 6 -1.7069 4.6341 -1.5057 19 6 -2.5048 5.8612 -1.9513 20 6 -0.5748 5.0708 -0.5708 21 6 -1.1774 5.6969 0.6897 22 8 -2.0486 4.7556 1.3197 23 6 -3.1527 4.3489 0.5086 24 6 -2.6295 3.6666 -0.7580 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8932 -0.5139 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.8293 -0.0614 2.9497 31 1 2.2718 2.1232 -1.9977 32 1 0.7112 3.2984 -3.4742 33 1 -1.6629 3.9530 -3.6502 34 1 -3.4370 5.5395 -2.4155 35 1 -2.7263 6.4846 -1.0850 36 1 -1.9193 6.4336 -2.6708 37 1 0.0245 4.2033 -0.2944 38 1 0.0543 5.8026 -1.0777 39 1 -1.7418 6.5886 0.4168 40 1 -0.3777 5.9695 1.3784 41 1 -3.7430 5.2229 0.2335 42 1 -3.7761 3.6503 1.0669 43 1 -3.4686 3.3951 -1.3986 44 1 -2.0734 2.7694 -0.4864 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493551001.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:59 Heat of formation + Delta-G solvation = -37.752219 kcal Electronic energy + Delta-G solvation = -24017.493119 eV Core-core repulsion = 20743.614761 eV Total energy + Delta-G solvation = -3273.878358 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.45595 -38.47829 -35.78427 -34.65997 -32.43863 -31.58647 -30.69518 -30.52466 -27.66549 -27.04113 -24.33988 -23.25602 -23.09192 -21.88283 -19.81239 -19.39335 -18.02751 -16.98605 -15.98009 -15.87915 -15.66206 -15.19247 -14.73668 -14.55851 -14.53861 -14.13110 -13.73922 -13.42062 -12.85782 -12.62150 -12.34299 -12.28051 -11.96344 -11.79107 -11.52357 -11.28721 -11.23793 -10.98169 -10.86288 -10.79734 -10.43269 -10.36349 -10.24041 -10.01521 -9.73554 -9.50618 -9.14571 -9.00691 -8.81314 -8.45406 -8.32667 -7.63622 -6.10324 -4.19631 1.51732 3.25509 3.32503 3.33927 3.89678 4.22098 4.30477 4.46137 4.86803 4.92966 5.12965 5.21151 5.38230 5.45351 5.47645 5.54468 5.59537 5.67949 5.72116 5.85699 5.93310 6.00561 6.03301 6.13875 6.32096 6.41929 6.44069 6.49355 6.53897 6.64864 6.73818 6.92251 7.00932 7.08250 7.25149 7.41296 7.58044 7.64015 7.66217 7.77545 7.94073 8.21617 8.71167 8.81363 9.21297 9.48125 10.94828 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023189 B = 0.004990 C = 0.004907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.182129 B = 5610.398986 C = 5704.220331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.052 0.948 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.701 5.701 14 C 0.524 3.476 15 O -0.518 6.518 16 C -0.221 4.221 17 C -0.064 4.064 18 C -0.026 4.026 19 C -0.144 4.144 20 C -0.191 4.191 21 C 0.071 3.929 22 O -0.374 6.374 23 C 0.069 3.931 24 C -0.161 4.161 25 H 0.052 0.948 26 H 0.039 0.961 27 H 0.020 0.980 28 H 0.029 0.971 29 H 0.098 0.902 30 H 0.264 0.736 31 H 0.387 0.613 32 H 0.123 0.877 33 H 0.118 0.882 34 H 0.053 0.947 35 H 0.059 0.941 36 H 0.053 0.947 37 H 0.140 0.860 38 H 0.052 0.948 39 H 0.035 0.965 40 H 0.085 0.915 41 H 0.035 0.965 42 H 0.083 0.917 43 H 0.051 0.949 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.652 7.950 -8.983 15.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.070 0.930 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.347 5.347 14 C 0.314 3.686 15 O -0.402 6.402 16 C -0.242 4.242 17 C -0.084 4.084 18 C -0.026 4.026 19 C -0.201 4.201 20 C -0.227 4.227 21 C -0.006 4.006 22 O -0.292 6.292 23 C -0.008 4.008 24 C -0.197 4.197 25 H 0.071 0.929 26 H 0.058 0.942 27 H 0.039 0.961 28 H 0.048 0.952 29 H 0.116 0.884 30 H 0.074 0.926 31 H 0.220 0.780 32 H 0.141 0.859 33 H 0.136 0.864 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.157 0.843 38 H 0.071 0.929 39 H 0.053 0.947 40 H 0.103 0.897 41 H 0.053 0.947 42 H 0.102 0.898 43 H 0.070 0.930 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -10.100 7.730 -7.927 14.987 hybrid contribution 1.265 0.177 -0.830 1.523 sum -8.835 7.907 -8.758 14.740 Atomic orbital electron populations 1.21842 0.98284 0.97946 1.01310 1.21925 0.92681 0.99862 1.02134 1.18794 0.94121 0.89213 0.81036 0.93034 1.21228 0.90809 1.39002 1.06244 0.92212 1.24870 0.98466 0.94827 0.95433 1.69893 1.35066 1.37566 1.09296 0.86485 0.85052 0.77633 0.78140 1.20592 1.21107 1.19920 1.46540 1.14062 1.55706 1.18367 1.18459 0.82707 0.80142 0.87278 1.90513 1.49772 1.59928 1.40016 1.22869 0.98489 1.03411 0.99391 1.23567 0.93933 0.92158 0.98711 1.19569 0.95964 0.93965 0.93070 1.21996 0.99452 0.97544 1.01120 1.23358 0.98931 1.04924 0.95483 1.22447 0.92869 0.90219 0.95080 1.87949 1.38365 1.62462 1.40455 1.22434 0.88388 0.97408 0.92564 1.22721 0.98559 1.02528 0.95935 0.92936 0.94227 0.96099 0.95248 0.88390 0.92590 0.78039 0.85916 0.86430 0.92802 0.92213 0.92829 0.84349 0.92929 0.94685 0.89684 0.94697 0.89834 0.93032 0.85268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 8.51 37.15 0.32 -2.66 16 2 C -0.13 -3.04 5.45 -26.74 -0.15 -3.19 16 3 C 0.27 6.58 2.24 -69.08 -0.15 6.43 16 4 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 5 C -0.53 -13.89 8.73 -34.43 -0.30 -14.19 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.55 11.29 55.43 0.63 -23.92 16 9 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 13 N -0.70 -13.90 5.02 -56.12 -0.28 -14.18 16 14 C 0.52 9.62 4.67 -12.67 -0.06 9.56 16 15 O -0.52 -10.58 6.75 5.27 0.04 -10.54 16 16 C -0.22 -3.15 9.37 -37.81 -0.35 -3.50 16 17 C -0.06 -0.82 8.53 -36.12 -0.31 -1.13 16 18 C -0.03 -0.35 0.50 -155.47 -0.08 -0.43 16 19 C -0.14 -1.59 7.91 37.16 0.29 -1.30 16 20 C -0.19 -3.02 4.02 -26.59 -0.11 -3.13 16 21 C 0.07 1.10 6.57 37.21 0.24 1.34 16 22 O -0.37 -6.63 10.77 -35.23 -0.38 -7.01 16 23 C 0.07 1.01 6.57 37.20 0.24 1.25 16 24 C -0.16 -2.38 4.58 -26.59 -0.12 -2.50 16 25 H 0.05 1.22 7.84 -51.93 -0.41 0.81 16 26 H 0.04 0.83 5.64 -51.93 -0.29 0.53 16 27 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 30 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.39 6.81 8.52 -40.82 -0.35 6.47 16 32 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 33 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 34 H 0.05 0.53 8.07 -51.93 -0.42 0.11 16 35 H 0.06 0.67 5.16 -51.93 -0.27 0.40 16 36 H 0.05 0.54 8.07 -51.93 -0.42 0.12 16 37 H 0.14 2.69 3.24 -50.04 -0.16 2.53 16 38 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.04 0.47 6.35 -51.93 -0.33 0.14 16 40 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.03 0.44 6.92 -51.93 -0.36 0.08 16 42 H 0.08 1.15 8.14 -51.92 -0.42 0.72 16 43 H 0.05 0.67 8.13 -51.93 -0.42 0.24 16 44 H 0.13 2.36 4.73 -46.90 -0.22 2.14 16 LS Contribution 326.71 15.07 4.92 4.92 Total: -1.00 -28.48 326.71 -7.57 -36.06 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -6.85 Total: 10.90 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -0.62 Total: -11.74 kcal Atomic # 7 Polarization: -38.44 SS G_CDS: 0.34 Total: -38.10 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.34 Total: -17.55 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.48 -7.57 -36.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493551001.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.694 kcal (2) G-P(sol) polarization free energy of solvation -28.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds