Wall clock time and date at job start Tue Mar 31 2020 05:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53010 * 109.46957 * 2 1 4 4 H 1.08997 * 109.46755 * 304.99298 * 3 2 1 5 5 C 1.50704 * 109.46828 * 185.00080 * 3 2 1 6 6 H 1.08004 * 119.99392 * 239.99769 * 5 3 2 7 7 C 1.37879 * 120.00332 * 60.00067 * 5 3 2 8 8 N 1.31511 * 119.99851 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99863 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47487 * 359.97438 * 9 7 5 11 11 H 1.48490 * 109.47294 * 119.99956 * 9 7 5 12 12 H 1.48505 * 109.46864 * 239.99763 * 9 7 5 13 13 N 1.46496 * 109.47152 * 64.99855 * 3 2 1 14 14 C 1.34776 * 119.99879 * 274.99794 * 13 3 2 15 15 O 1.21611 * 119.99903 * 0.02562 * 14 13 3 16 16 C 1.47101 * 119.99681 * 180.27229 * 14 13 3 17 17 C 1.32998 * 119.99602 * 131.46507 * 16 14 13 18 18 C 1.50699 * 120.00246 * 327.79760 * 17 16 14 19 19 C 1.52999 * 109.54480 * 230.94820 * 18 17 16 20 20 C 1.53183 * 109.54494 * 110.76641 * 18 17 16 21 21 C 1.53099 * 109.15572 * 183.24358 * 20 18 17 22 22 O 1.42901 * 109.49104 * 57.47840 * 21 20 18 23 23 C 1.42913 * 114.09495 * 298.88785 * 22 21 20 24 24 C 1.53085 * 109.41285 * 61.15663 * 23 22 21 25 25 H 1.08997 * 109.47491 * 300.00194 * 1 2 3 26 26 H 1.09003 * 109.47312 * 60.00013 * 1 2 3 27 27 H 1.09000 * 109.47279 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47489 * 240.00344 * 2 1 3 29 29 H 1.08997 * 109.47511 * 119.99304 * 2 1 3 30 30 H 0.96995 * 120.00145 * 179.97438 * 8 7 5 31 31 H 0.97005 * 120.00198 * 94.99878 * 13 3 2 32 32 H 1.07997 * 120.00577 * 311.46533 * 16 14 13 33 33 H 1.07997 * 119.99831 * 147.79950 * 17 16 14 34 34 H 1.08999 * 109.47235 * 66.71333 * 19 18 17 35 35 H 1.09002 * 109.46856 * 186.71333 * 19 18 17 36 36 H 1.08998 * 109.47195 * 306.71087 * 19 18 17 37 37 H 1.08997 * 109.51964 * 303.06407 * 20 18 17 38 38 H 1.08998 * 109.51454 * 63.25317 * 20 18 17 39 39 H 1.09000 * 109.40925 * 297.49305 * 21 20 18 40 40 H 1.09005 * 109.49071 * 177.51208 * 21 20 18 41 41 H 1.09000 * 109.47771 * 301.17152 * 23 22 21 42 42 H 1.08998 * 109.48319 * 181.14374 * 23 22 21 43 43 H 1.09006 * 109.52274 * 182.48879 * 24 23 22 44 44 H 1.08998 * 109.57628 * 62.32883 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4444 -0.1239 6 1 4.1471 1.8890 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3367 -2.1729 9 14 6.0050 0.8801 -1.3810 10 1 6.5988 1.5453 -0.1936 11 1 6.4962 -0.5188 -1.4625 12 1 6.4000 1.6158 -2.6091 13 7 1.6523 2.0976 1.2518 14 6 0.4350 2.6645 1.3668 15 8 -0.3418 2.6319 0.4317 16 6 0.0481 3.3274 2.6217 17 6 -0.4871 4.5446 2.5931 18 6 -0.0768 5.5232 1.5232 19 6 0.3197 6.8520 2.1697 20 6 -1.2466 5.7505 0.5607 21 6 -0.7954 6.6821 -0.5673 22 8 0.3331 6.1123 -1.2336 23 6 1.4727 5.9224 -0.3924 24 6 1.1133 4.9585 0.7413 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 3.8293 -0.0611 -2.9498 31 1 2.2718 2.1233 1.9978 32 1 0.1986 2.8258 3.5662 33 1 -1.2158 4.8316 3.3367 34 1 1.2264 6.7133 2.7585 35 1 0.5013 7.5943 1.3924 36 1 -0.4860 7.1951 2.8186 37 1 -1.5621 4.7962 0.1391 38 1 -2.0783 6.2047 1.0993 39 1 -0.5199 7.6503 -0.1492 40 1 -1.6103 6.8124 -1.2794 41 1 1.7778 6.8806 0.0280 42 1 2.2916 5.5051 -0.9784 43 1 1.9676 4.8467 1.4090 44 1 0.8473 3.9872 0.3243 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493551002.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:01 Heat of formation + Delta-G solvation = -51.916089 kcal Electronic energy + Delta-G solvation = -24105.193543 eV Core-core repulsion = 20830.700994 eV Total energy + Delta-G solvation = -3274.492549 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.51605 -38.61550 -35.75318 -34.80488 -32.38134 -31.62488 -30.72794 -30.56364 -27.78582 -26.99895 -24.48949 -23.38188 -23.12903 -21.94267 -19.71621 -19.17858 -18.38385 -17.06963 -15.97855 -15.86660 -15.66377 -15.22119 -14.88496 -14.65294 -14.44946 -14.04905 -13.56945 -13.34943 -13.04903 -12.67058 -12.57399 -12.23036 -12.00285 -11.85174 -11.48691 -11.37798 -11.23809 -10.99758 -10.92221 -10.83971 -10.44076 -10.42157 -10.27536 -10.13713 -9.75427 -9.58908 -9.15836 -9.04793 -8.96677 -8.58532 -8.46711 -7.76409 -6.09991 -4.19157 1.68478 3.24361 3.32597 3.34570 3.68901 4.18504 4.22896 4.44717 4.77466 4.79274 5.03914 5.21438 5.27127 5.32011 5.37970 5.48215 5.55263 5.65693 5.69372 5.77051 5.85645 5.91202 6.02505 6.08685 6.20103 6.35321 6.42717 6.48137 6.49585 6.56101 6.64765 6.72017 6.84948 7.07859 7.24124 7.41069 7.49690 7.52535 7.65260 7.76947 7.93395 8.21089 8.70240 8.80650 9.16258 9.48338 10.95300 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018163 B = 0.006003 C = 0.005315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.217397 B = 4662.866493 C = 5266.521144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.269 3.731 4 H 0.050 0.950 5 C -0.532 4.532 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.898 3.102 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.711 5.711 14 C 0.553 3.447 15 O -0.544 6.544 16 C -0.215 4.215 17 C -0.084 4.084 18 C -0.036 4.036 19 C -0.139 4.139 20 C -0.144 4.144 21 C 0.061 3.939 22 O -0.378 6.378 23 C 0.068 3.932 24 C -0.191 4.191 25 H 0.038 0.962 26 H 0.050 0.950 27 H 0.021 0.979 28 H 0.098 0.902 29 H 0.030 0.970 30 H 0.263 0.737 31 H 0.388 0.612 32 H 0.131 0.869 33 H 0.119 0.881 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.089 0.911 38 H 0.065 0.935 39 H 0.044 0.956 40 H 0.087 0.913 41 H 0.040 0.960 42 H 0.095 0.905 43 H 0.069 0.931 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.849 10.533 9.290 15.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.167 3.833 4 H 0.068 0.932 5 C -0.570 4.570 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.725 3.275 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.358 5.358 14 C 0.341 3.659 15 O -0.426 6.426 16 C -0.236 4.236 17 C -0.103 4.103 18 C -0.036 4.036 19 C -0.196 4.196 20 C -0.182 4.182 21 C -0.016 4.016 22 O -0.296 6.296 23 C -0.008 4.008 24 C -0.228 4.228 25 H 0.057 0.943 26 H 0.069 0.931 27 H 0.040 0.960 28 H 0.116 0.884 29 H 0.048 0.952 30 H 0.073 0.927 31 H 0.220 0.780 32 H 0.148 0.852 33 H 0.137 0.863 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.107 0.893 38 H 0.084 0.916 39 H 0.062 0.938 40 H 0.105 0.895 41 H 0.058 0.942 42 H 0.113 0.887 43 H 0.088 0.912 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.345 10.339 8.225 14.656 hybrid contribution 1.328 -0.044 0.772 1.537 sum -5.017 10.296 8.997 14.564 Atomic orbital electron populations 1.21840 0.98342 0.97954 1.01298 1.21938 0.92620 0.99952 1.02181 1.18779 0.94158 0.89156 0.81162 0.93176 1.21251 0.90759 1.38860 1.06159 0.92141 1.24871 0.98399 0.94884 0.95457 1.69900 1.34949 1.37649 1.09323 0.86454 0.85162 0.77752 0.78089 1.19804 1.20933 1.20900 1.46757 1.14391 1.56180 1.18493 1.18127 0.82673 0.78094 0.86967 1.90822 1.51638 1.61457 1.38706 1.22946 1.04837 0.97795 0.97993 1.23327 0.94738 0.93851 0.98409 1.19748 0.95942 0.94100 0.93847 1.21903 1.01350 0.95885 1.00435 1.22259 0.97051 1.02259 0.96596 1.22545 0.89279 0.94746 0.94991 1.87973 1.22182 1.83341 1.36121 1.22523 0.88444 0.97203 0.92665 1.23309 0.97138 1.04220 0.98129 0.94252 0.93097 0.96000 0.88366 0.95163 0.92652 0.77998 0.85168 0.86278 0.92393 0.92069 0.92611 0.89257 0.91621 0.93758 0.89453 0.94173 0.88686 0.91243 0.85123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.51 37.15 0.32 -2.76 16 2 C -0.13 -3.10 5.45 -26.73 -0.15 -3.25 16 3 C 0.27 6.60 2.21 -69.08 -0.15 6.44 16 4 H 0.05 1.44 7.58 -51.93 -0.39 1.04 16 5 C -0.53 -13.75 8.73 -34.44 -0.30 -14.05 16 6 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.59 11.29 55.43 0.63 -23.96 16 9 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 10 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 N -0.71 -14.20 4.66 -62.23 -0.29 -14.49 16 14 C 0.55 10.52 2.69 -12.67 -0.03 10.48 16 15 O -0.54 -12.19 11.72 5.27 0.06 -12.13 16 16 C -0.21 -3.16 9.48 -37.81 -0.36 -3.51 16 17 C -0.08 -1.10 8.62 -36.13 -0.31 -1.41 16 18 C -0.04 -0.50 0.60 -155.47 -0.09 -0.59 16 19 C -0.14 -1.50 7.89 37.16 0.29 -1.21 16 20 C -0.14 -2.01 4.91 -26.59 -0.13 -2.14 16 21 C 0.06 0.84 6.57 37.21 0.24 1.09 16 22 O -0.38 -6.67 10.77 -35.23 -0.38 -7.05 16 23 C 0.07 1.12 6.57 37.20 0.24 1.36 16 24 C -0.19 -3.18 3.32 -26.59 -0.09 -3.27 16 25 H 0.04 0.85 5.64 -51.93 -0.29 0.56 16 26 H 0.05 1.22 7.84 -51.93 -0.41 0.81 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.10 2.64 5.95 -51.93 -0.31 2.34 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.39 6.87 8.52 -40.82 -0.35 6.52 16 32 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 33 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.65 5.06 -51.93 -0.26 0.39 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.09 1.54 7.21 -51.93 -0.37 1.17 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.04 0.52 6.47 -51.93 -0.34 0.18 16 40 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.04 0.56 6.76 -51.93 -0.35 0.21 16 42 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 43 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 44 H 0.13 2.66 3.05 -64.10 -0.20 2.47 16 LS Contribution 331.47 15.07 5.00 5.00 Total: -1.00 -29.58 331.47 -7.65 -37.24 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -7.04 Total: 11.02 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: -0.61 Total: -11.12 kcal Atomic # 7 Polarization: -38.78 SS G_CDS: 0.34 Total: -38.45 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.32 Total: -19.18 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.58 -7.65 -37.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493551002.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.680 kcal (2) G-P(sol) polarization free energy of solvation -29.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds