Wall clock time and date at job start Tue Mar 31 2020 05:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53010 * 109.46957 * 2 1 4 4 H 1.08997 * 109.46755 * 304.99298 * 3 2 1 5 5 C 1.50704 * 109.46828 * 185.00080 * 3 2 1 6 6 H 1.08004 * 119.99392 * 239.99769 * 5 3 2 7 7 C 1.37879 * 120.00332 * 60.00067 * 5 3 2 8 8 N 1.31511 * 119.99851 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99863 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47487 * 359.97438 * 9 7 5 11 11 H 1.48490 * 109.47294 * 119.99956 * 9 7 5 12 12 H 1.48505 * 109.46864 * 239.99763 * 9 7 5 13 13 N 1.46496 * 109.47152 * 64.99855 * 3 2 1 14 14 C 1.34776 * 119.99879 * 274.99794 * 13 3 2 15 15 O 1.21611 * 119.99903 * 0.02562 * 14 13 3 16 16 C 1.47101 * 119.99681 * 180.27229 * 14 13 3 17 17 C 1.32998 * 119.99602 * 131.46507 * 16 14 13 18 18 C 1.50699 * 120.00246 * 327.79760 * 17 16 14 19 19 C 1.52999 * 109.54480 * 230.94820 * 18 17 16 20 20 C 1.53183 * 109.54494 * 110.76641 * 18 17 16 21 21 C 1.53099 * 109.15572 * 183.24358 * 20 18 17 22 22 O 1.42901 * 109.49104 * 57.47840 * 21 20 18 23 23 C 1.42913 * 114.09495 * 298.88785 * 22 21 20 24 24 C 1.53085 * 109.41285 * 61.15663 * 23 22 21 25 25 H 1.08997 * 109.47491 * 300.00194 * 1 2 3 26 26 H 1.09003 * 109.47312 * 60.00013 * 1 2 3 27 27 H 1.09000 * 109.47279 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47489 * 240.00344 * 2 1 3 29 29 H 1.08997 * 109.47511 * 119.99304 * 2 1 3 30 30 H 0.96995 * 120.00145 * 179.97438 * 8 7 5 31 31 H 0.97005 * 120.00198 * 94.99878 * 13 3 2 32 32 H 1.07997 * 120.00577 * 311.46533 * 16 14 13 33 33 H 1.07997 * 119.99831 * 147.79950 * 17 16 14 34 34 H 1.08999 * 109.47235 * 66.71333 * 19 18 17 35 35 H 1.09002 * 109.46856 * 186.71333 * 19 18 17 36 36 H 1.08998 * 109.47195 * 306.71087 * 19 18 17 37 37 H 1.08997 * 109.51964 * 303.06407 * 20 18 17 38 38 H 1.08998 * 109.51454 * 63.25317 * 20 18 17 39 39 H 1.09000 * 109.40925 * 297.49305 * 21 20 18 40 40 H 1.09005 * 109.49071 * 177.51208 * 21 20 18 41 41 H 1.09000 * 109.47771 * 301.17152 * 23 22 21 42 42 H 1.08998 * 109.48319 * 181.14374 * 23 22 21 43 43 H 1.09006 * 109.52274 * 182.48879 * 24 23 22 44 44 H 1.08998 * 109.57628 * 62.32883 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4444 -0.1239 6 1 4.1471 1.8890 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3367 -2.1729 9 14 6.0050 0.8801 -1.3810 10 1 6.5988 1.5453 -0.1936 11 1 6.4962 -0.5188 -1.4625 12 1 6.4000 1.6158 -2.6091 13 7 1.6523 2.0976 1.2518 14 6 0.4350 2.6645 1.3668 15 8 -0.3418 2.6319 0.4317 16 6 0.0481 3.3274 2.6217 17 6 -0.4871 4.5446 2.5931 18 6 -0.0768 5.5232 1.5232 19 6 0.3197 6.8520 2.1697 20 6 -1.2466 5.7505 0.5607 21 6 -0.7954 6.6821 -0.5673 22 8 0.3331 6.1123 -1.2336 23 6 1.4727 5.9224 -0.3924 24 6 1.1133 4.9585 0.7413 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 3.8293 -0.0611 -2.9498 31 1 2.2718 2.1233 1.9978 32 1 0.1986 2.8258 3.5662 33 1 -1.2158 4.8316 3.3367 34 1 1.2264 6.7133 2.7585 35 1 0.5013 7.5943 1.3924 36 1 -0.4860 7.1951 2.8186 37 1 -1.5621 4.7962 0.1391 38 1 -2.0783 6.2047 1.0993 39 1 -0.5199 7.6503 -0.1492 40 1 -1.6103 6.8124 -1.2794 41 1 1.7778 6.8806 0.0280 42 1 2.2916 5.5051 -0.9784 43 1 1.9676 4.8467 1.4090 44 1 0.8473 3.9872 0.3243 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493551002.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:01 Heat of formation + Delta-G solvation = -71.450789 kcal Electronic energy + Delta-G solvation = -24106.040631 eV Core-core repulsion = 20830.700994 eV Total energy + Delta-G solvation = -3275.339637 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.84101 -40.02375 -37.23003 -36.39218 -34.23865 -33.13831 -32.12147 -31.93085 -29.04507 -28.69053 -25.77427 -24.89894 -24.60700 -23.41290 -21.48564 -20.70694 -19.61234 -18.66201 -17.53102 -17.25226 -17.23760 -16.73918 -16.36695 -15.92370 -15.74837 -15.50435 -15.08010 -14.67630 -14.46287 -14.20436 -13.92464 -13.77506 -13.38166 -13.18131 -13.16062 -12.86871 -12.81995 -12.71291 -12.35476 -12.15243 -12.10337 -12.03615 -11.72837 -11.55825 -11.50110 -11.05792 -10.94283 -10.62733 -10.46532 -10.34091 -9.77084 -9.46702 -8.14500 -6.31077 0.56772 1.42208 1.43621 1.54853 2.25466 2.39063 2.84654 3.01381 3.15349 3.68726 3.73530 3.95783 4.12884 4.21751 4.26829 4.31087 4.40888 4.50078 4.58544 4.63839 4.68300 4.71351 4.75082 4.79532 4.83443 4.95297 5.06405 5.08811 5.17599 5.24364 5.28445 5.33662 5.39552 5.46388 5.49977 5.59029 5.70858 5.71727 5.84041 6.00359 6.20377 6.33081 6.78281 7.08811 7.36495 7.68317 8.90988 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018163 B = 0.006003 C = 0.005315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.217397 B = 4662.866493 C = 5266.521144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.122 4.122 3 C 0.283 3.717 4 H -0.005 1.005 5 C -0.541 4.541 6 H 0.070 0.930 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.965 3.035 10 H -0.260 1.260 11 H -0.279 1.279 12 H -0.286 1.286 13 N -0.710 5.710 14 C 0.554 3.446 15 O -0.585 6.585 16 C -0.236 4.236 17 C -0.060 4.060 18 C -0.040 4.040 19 C -0.132 4.132 20 C -0.140 4.140 21 C 0.054 3.946 22 O -0.413 6.413 23 C 0.068 3.932 24 C -0.193 4.193 25 H 0.045 0.955 26 H 0.023 0.977 27 H 0.043 0.957 28 H 0.069 0.931 29 H 0.039 0.961 30 H 0.263 0.737 31 H 0.400 0.600 32 H 0.163 0.837 33 H 0.162 0.838 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.083 0.917 37 H 0.046 0.954 38 H 0.100 0.900 39 H 0.075 0.925 40 H 0.096 0.904 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.992 12.460 12.308 18.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.162 4.162 3 C 0.180 3.820 4 H 0.013 0.987 5 C -0.580 4.580 6 H 0.088 0.912 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.790 3.210 10 H -0.184 1.184 11 H -0.205 1.205 12 H -0.212 1.212 13 N -0.358 5.358 14 C 0.346 3.654 15 O -0.469 6.469 16 C -0.256 4.256 17 C -0.079 4.079 18 C -0.040 4.040 19 C -0.189 4.189 20 C -0.178 4.178 21 C -0.022 4.022 22 O -0.333 6.333 23 C -0.009 4.009 24 C -0.230 4.230 25 H 0.064 0.936 26 H 0.042 0.958 27 H 0.062 0.938 28 H 0.087 0.913 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.234 0.766 32 H 0.180 0.820 33 H 0.180 0.820 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.102 0.898 37 H 0.065 0.935 38 H 0.118 0.882 39 H 0.093 0.907 40 H 0.114 0.886 41 H 0.090 0.910 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.489 12.280 11.286 17.896 hybrid contribution 1.305 -0.566 -0.225 1.440 sum -5.184 11.714 11.061 16.924 Atomic orbital electron populations 1.21657 0.97022 0.98921 1.00239 1.21799 0.93719 0.99579 1.01063 1.18241 0.93339 0.88836 0.81627 0.98672 1.21593 0.91593 1.38404 1.06378 0.91232 1.25738 1.02995 0.94573 0.95157 1.70060 1.36862 1.38620 1.09898 0.85401 0.79614 0.77792 0.78167 1.18373 1.20510 1.21194 1.46510 1.15457 1.56603 1.17261 1.18817 0.81424 0.77156 0.88020 1.90806 1.52716 1.62560 1.40834 1.22890 1.06838 0.99131 0.96783 1.23761 0.93144 0.92742 0.98278 1.19868 0.94335 0.95940 0.93881 1.21865 1.02630 0.93631 1.00748 1.22208 0.98269 1.00411 0.96912 1.22812 0.88336 0.95736 0.95300 1.87919 1.23518 1.84067 1.37759 1.22493 0.87686 0.98526 0.92174 1.23197 0.98742 1.02568 0.98461 0.93574 0.95819 0.93839 0.91304 0.94190 0.92768 0.76584 0.81960 0.82029 0.91882 0.91851 0.89772 0.93537 0.88157 0.90723 0.88575 0.91037 0.91533 0.91230 0.89039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.61 8.51 71.98 0.61 -5.00 16 2 C -0.12 -6.17 5.45 30.60 0.17 -6.00 16 3 C 0.28 14.57 2.21 44.25 0.10 14.67 16 4 H 0.00 -0.29 7.58 -2.39 -0.02 -0.30 16 5 C -0.54 -28.77 8.73 25.60 0.22 -28.54 16 6 H 0.07 3.48 7.74 -2.91 -0.02 3.45 16 7 C 0.02 0.83 5.29 84.66 0.45 1.28 16 8 N -0.92 -53.42 11.29 21.45 0.24 -53.18 16 9 Si 0.97 42.70 29.54 68.60 2.03 44.72 16 10 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 11 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 12 H -0.29 -12.69 7.11 99.48 0.71 -11.99 16 13 N -0.71 -29.03 4.66 -469.05 -2.18 -31.21 16 14 C 0.55 21.38 2.69 86.57 0.23 21.61 16 15 O -0.58 -27.46 11.72 -4.06 -0.05 -27.51 16 16 C -0.24 -6.41 9.48 23.43 0.22 -6.19 16 17 C -0.06 -1.37 8.62 24.52 0.21 -1.15 16 18 C -0.04 -0.99 0.60 -52.81 -0.03 -1.03 16 19 C -0.13 -2.26 7.89 71.98 0.57 -1.69 16 20 C -0.14 -3.65 4.91 30.69 0.15 -3.50 16 21 C 0.05 1.41 6.57 72.02 0.47 1.88 16 22 O -0.41 -14.91 10.77 -148.98 -1.60 -16.51 16 23 C 0.07 2.26 6.57 72.01 0.47 2.73 16 24 C -0.19 -6.42 3.32 30.68 0.10 -6.32 16 25 H 0.05 2.05 5.64 -2.39 -0.01 2.03 16 26 H 0.02 1.18 7.84 -2.39 -0.02 1.16 16 27 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.07 3.89 5.95 -2.39 -0.01 3.88 16 29 H 0.04 1.88 8.14 -2.39 -0.02 1.87 16 30 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 31 H 0.40 14.14 8.52 -92.70 -0.79 13.35 16 32 H 0.16 3.33 8.06 -2.91 -0.02 3.31 16 33 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 34 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.06 1.07 5.06 -2.39 -0.01 1.06 16 36 H 0.08 1.01 8.14 -2.39 -0.02 1.00 16 37 H 0.05 1.62 7.21 -2.39 -0.02 1.61 16 38 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.07 1.50 6.47 -2.39 -0.02 1.48 16 40 H 0.10 2.27 8.14 -2.38 -0.02 2.26 16 41 H 0.07 1.89 6.76 -2.39 -0.02 1.87 16 42 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 43 H 0.07 2.23 8.10 -2.38 -0.02 2.21 16 44 H 0.09 3.91 3.05 -14.06 -0.04 3.86 16 Total: -1.00 -69.63 331.47 2.55 -67.08 By element: Atomic # 1 Polarization: 33.70 SS G_CDS: 0.17 Total: 33.87 kcal Atomic # 6 Polarization: -21.20 SS G_CDS: 3.95 Total: -17.25 kcal Atomic # 7 Polarization: -82.45 SS G_CDS: -1.94 Total: -84.39 kcal Atomic # 8 Polarization: -42.38 SS G_CDS: -1.65 Total: -44.03 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.72 kcal Total: -69.63 2.55 -67.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493551002.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.373 kcal (2) G-P(sol) polarization free energy of solvation -69.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds