Wall clock time and date at job start Tue Mar 31 2020 05:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47291 * 2 1 4 4 N 1.46506 * 109.47017 * 64.99745 * 3 2 1 5 5 C 1.46505 * 119.99903 * 90.00392 * 4 3 2 6 6 C 1.34775 * 120.00171 * 270.00306 * 4 3 2 7 7 O 1.21619 * 120.00022 * 359.97438 * 6 4 3 8 8 C 1.47096 * 119.99959 * 180.02562 * 6 4 3 9 9 C 1.32995 * 120.00007 * 152.17676 * 8 6 4 10 10 C 1.50700 * 120.00082 * 320.95861 * 9 8 6 11 11 C 1.53000 * 109.54802 * 228.44892 * 10 9 8 12 12 C 1.53178 * 109.54294 * 108.18195 * 10 9 8 13 13 C 1.53093 * 109.16113 * 183.15856 * 12 10 9 14 14 O 1.42901 * 109.42226 * 57.60549 * 13 12 10 15 15 C 1.42900 * 114.09595 * 298.84477 * 14 13 12 16 16 C 1.53098 * 109.41598 * 61.15401 * 15 14 13 17 17 C 1.50700 * 109.47218 * 239.99738 * 2 1 3 18 18 N 1.27945 * 119.99762 * 25.00783 * 17 2 1 19 19 Si 1.86801 * 120.00067 * 204.99671 * 17 2 1 20 20 H 1.48495 * 109.46668 * 90.00563 * 19 17 2 21 21 H 1.48501 * 109.47045 * 210.00260 * 19 17 2 22 22 H 1.48497 * 109.47197 * 330.00396 * 19 17 2 23 23 H 1.08998 * 109.47496 * 299.99804 * 1 2 3 24 24 H 1.09002 * 109.47309 * 60.00350 * 1 2 3 25 25 H 1.09005 * 109.47123 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47288 * 120.00191 * 2 1 3 27 27 H 1.08996 * 109.47268 * 305.00046 * 3 2 1 28 28 H 1.08995 * 109.47600 * 184.99956 * 3 2 1 29 29 H 1.09000 * 109.47195 * 89.99871 * 5 4 3 30 30 H 1.09000 * 109.46544 * 329.99845 * 5 4 3 31 31 H 1.08994 * 109.46985 * 209.99955 * 5 4 3 32 32 H 1.07996 * 120.00334 * 332.17895 * 8 6 4 33 33 H 1.07999 * 120.00473 * 140.96112 * 9 8 6 34 34 H 1.09001 * 109.46761 * 83.08854 * 11 10 9 35 35 H 1.08992 * 109.47620 * 203.08719 * 11 10 9 36 36 H 1.09002 * 109.46796 * 323.09500 * 11 10 9 37 37 H 1.09003 * 109.52324 * 303.05514 * 12 10 9 38 38 H 1.08998 * 109.52299 * 63.24894 * 12 10 9 39 39 H 1.09008 * 109.48122 * 297.61807 * 13 12 10 40 40 H 1.09006 * 109.48764 * 177.60197 * 13 12 10 41 41 H 1.08995 * 109.48302 * 301.17182 * 15 14 13 42 42 H 1.09003 * 109.49163 * 181.14365 * 15 14 13 43 43 H 1.09005 * 109.52078 * 182.48381 * 16 15 14 44 44 H 1.09005 * 109.57166 * 62.32810 * 16 15 14 45 45 H 0.96999 * 119.99946 * 179.97438 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.6523 2.0975 1.2518 5 6 2.5427 2.0417 2.4140 6 6 0.4767 2.7513 1.3344 7 8 -0.2622 2.7981 0.3695 8 6 0.0878 3.4095 2.5911 9 6 -0.7182 4.4671 2.5662 10 6 -0.5672 5.5042 1.4833 11 6 -0.5446 6.8996 2.1104 12 6 -1.7417 5.3988 0.5056 13 6 -1.5391 6.4019 -0.6330 14 8 -0.2916 6.1416 -1.2794 15 6 0.8465 6.2718 -0.4251 16 6 0.7399 5.2634 0.7219 17 6 2.0323 -0.7105 -1.2304 18 7 1.2988 -0.7738 -2.2768 19 14 3.7260 -1.4984 -1.2279 20 1 3.6169 -2.9047 -0.7637 21 1 4.2857 -1.4731 -2.6032 22 1 4.6217 -0.7438 -0.3150 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 0.8900 27 1 1.6054 1.9815 -0.8418 28 1 3.1262 1.4438 -0.0896 29 1 3.2229 2.8931 2.3917 30 1 3.1179 1.1162 2.3868 31 1 1.9496 2.0743 3.3279 32 1 0.4568 3.0339 3.5340 33 1 -1.4809 4.5827 3.3220 34 1 0.4632 7.1247 2.4595 35 1 -0.8445 7.6373 1.3663 36 1 -1.2362 6.9307 2.9524 37 1 -1.7865 4.3890 0.0976 38 1 -2.6717 5.6233 1.0278 39 1 -1.5350 7.4144 -0.2291 40 1 -2.3502 6.3019 -1.3544 41 1 0.8820 7.2824 -0.0184 42 1 1.7543 6.0779 -0.9965 43 1 1.5847 5.3911 1.3988 44 1 0.7457 4.2504 0.3192 45 1 1.6222 -1.2307 -3.0689 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493581859.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:46 Heat of formation + Delta-G solvation = -14.838409 kcal Electronic energy + Delta-G solvation = -24475.854107 eV Core-core repulsion = 21189.313628 eV Total energy + Delta-G solvation = -3286.540480 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.186 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.90622 -40.21977 -38.15513 -36.66582 -36.14072 -33.39770 -32.29222 -31.86780 -28.84787 -28.32685 -27.50123 -25.67859 -24.58967 -24.42206 -22.56377 -20.22786 -19.92487 -19.16532 -18.31128 -17.71577 -17.34902 -17.17040 -16.61453 -16.25324 -15.78023 -15.66648 -15.50597 -14.96166 -14.78916 -14.49875 -14.38089 -14.29738 -14.01164 -13.82131 -13.67014 -13.21637 -13.11256 -12.95049 -12.86729 -12.62519 -12.44679 -12.18586 -12.07973 -12.03283 -11.78767 -11.69121 -11.53298 -11.37806 -10.92520 -10.67875 -10.27565 -9.84200 -9.69202 -9.44755 0.18684 0.80211 1.03295 1.33028 1.65928 1.78254 2.08532 2.20096 3.12971 3.55908 3.64441 3.65706 3.77717 3.96439 4.03117 4.08213 4.12237 4.21557 4.24915 4.32552 4.34955 4.41409 4.47315 4.54807 4.62772 4.68717 4.71726 4.77781 4.80828 4.84373 4.86603 4.91190 5.01949 5.06534 5.09006 5.22040 5.28046 5.30072 5.31776 5.35022 5.45825 5.48560 5.72174 5.80688 6.40666 6.45035 6.93707 7.30746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.077 4.077 3 C 0.124 3.876 4 N -0.616 5.616 5 C 0.075 3.925 6 C 0.561 3.439 7 O -0.517 6.517 8 C -0.245 4.245 9 C -0.039 4.039 10 C -0.040 4.040 11 C -0.144 4.144 12 C -0.147 4.147 13 C 0.060 3.940 14 O -0.378 6.378 15 C 0.066 3.934 16 C -0.184 4.184 17 C -0.003 4.003 18 N -0.617 5.617 19 Si 0.924 3.076 20 H -0.239 1.239 21 H -0.246 1.246 22 H -0.233 1.233 23 H 0.049 0.951 24 H 0.073 0.927 25 H 0.046 0.954 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.078 0.922 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.139 0.861 33 H 0.129 0.871 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.097 0.903 38 H 0.069 0.931 39 H 0.049 0.951 40 H 0.092 0.908 41 H 0.046 0.954 42 H 0.088 0.912 43 H 0.065 0.935 44 H 0.114 0.886 45 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.628 0.106 5.104 6.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.098 4.098 3 C 0.000 4.000 4 N -0.350 5.350 5 C -0.068 4.068 6 C 0.354 3.646 7 O -0.396 6.396 8 C -0.266 4.266 9 C -0.059 4.059 10 C -0.040 4.040 11 C -0.201 4.201 12 C -0.184 4.184 13 C -0.016 4.016 14 O -0.296 6.296 15 C -0.011 4.011 16 C -0.221 4.221 17 C -0.254 4.254 18 N -0.229 5.229 19 Si 0.740 3.260 20 H -0.162 1.162 21 H -0.169 1.169 22 H -0.155 1.155 23 H 0.068 0.932 24 H 0.092 0.908 25 H 0.065 0.935 26 H 0.104 0.896 27 H 0.112 0.888 28 H 0.097 0.903 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.156 0.844 33 H 0.147 0.853 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.115 0.885 38 H 0.088 0.912 39 H 0.067 0.933 40 H 0.110 0.890 41 H 0.064 0.936 42 H 0.106 0.894 43 H 0.084 0.916 44 H 0.132 0.868 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.131 0.046 4.142 5.193 hybrid contribution 0.584 -0.369 0.370 0.784 sum 3.715 -0.324 4.512 5.854 Atomic orbital electron populations 1.21609 0.92478 1.01116 1.02871 1.20828 0.98639 0.95455 0.94852 1.21432 0.99734 0.91602 0.87260 1.47930 1.19377 1.54377 1.13292 1.21874 0.94265 1.02522 0.88115 1.18414 0.80504 0.77961 0.87758 1.90836 1.50778 1.60864 1.37132 1.22659 1.04532 1.01832 0.97546 1.23712 0.91997 0.92420 0.97762 1.19824 0.96487 0.93720 0.93935 1.21993 1.02342 0.94824 1.00951 1.22339 0.96916 1.02918 0.96265 1.22620 0.86668 0.97024 0.95329 1.87957 1.14145 1.91155 1.36388 1.22478 0.89179 0.97425 0.92015 1.23164 0.96105 1.04647 0.98138 1.30155 1.03541 0.96245 0.95417 1.68197 1.37533 1.14548 1.02614 0.85869 0.75912 0.81591 0.82673 1.16228 1.16877 1.15531 0.93160 0.90763 0.93535 0.89603 0.88846 0.90321 0.92262 0.90814 0.90700 0.84400 0.85337 0.92206 0.91602 0.92039 0.88462 0.91247 0.93314 0.88963 0.93625 0.89383 0.91642 0.86834 0.84725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.32 7.42 37.15 0.28 -0.04 16 2 C -0.08 -0.01 2.52 -91.78 -0.23 -0.24 16 3 C 0.12 -0.02 4.95 -4.04 -0.02 -0.04 16 4 N -0.62 0.33 2.76 -182.98 -0.51 -0.17 16 5 C 0.08 -0.27 10.26 59.85 0.61 0.35 16 6 C 0.56 0.80 3.34 -12.67 -0.04 0.76 16 7 O -0.52 -2.39 10.45 5.26 0.05 -2.34 16 8 C -0.25 0.10 8.41 -37.81 -0.32 -0.22 16 9 C -0.04 0.01 8.34 -36.13 -0.30 -0.29 16 10 C -0.04 -0.02 0.50 -155.48 -0.08 -0.10 16 11 C -0.14 0.12 7.93 37.16 0.29 0.41 16 12 C -0.15 -0.26 4.80 -26.59 -0.13 -0.39 16 13 C 0.06 0.13 6.58 37.21 0.24 0.38 16 14 O -0.38 -1.73 10.77 -35.23 -0.38 -2.11 16 15 C 0.07 0.14 6.60 37.21 0.25 0.39 16 16 C -0.18 -0.26 3.60 -26.59 -0.10 -0.36 16 17 C 0.00 0.00 4.83 -13.90 -0.07 -0.07 16 18 N -0.62 -1.09 12.70 56.23 0.71 -0.37 16 19 Si 0.92 -1.33 29.21 -169.99 -4.96 -6.30 16 20 H -0.24 0.12 7.11 56.52 0.40 0.52 16 21 H -0.25 0.11 7.11 56.52 0.40 0.51 16 22 H -0.23 0.45 7.11 56.52 0.40 0.85 16 23 H 0.05 0.16 6.06 -51.93 -0.31 -0.15 16 24 H 0.07 0.38 7.65 -51.93 -0.40 -0.02 16 25 H 0.05 0.12 8.14 -51.93 -0.42 -0.30 16 26 H 0.09 -0.15 7.85 -51.93 -0.41 -0.56 16 27 H 0.09 0.21 7.42 -51.93 -0.39 -0.18 16 28 H 0.08 -0.18 7.76 -51.93 -0.40 -0.58 16 29 H 0.06 -0.24 8.14 -51.93 -0.42 -0.66 16 30 H 0.07 -0.35 8.07 -51.93 -0.42 -0.77 16 31 H 0.07 -0.34 6.03 -51.93 -0.31 -0.65 16 32 H 0.14 -0.38 6.41 -52.49 -0.34 -0.72 16 33 H 0.13 -0.26 8.06 -52.49 -0.42 -0.68 16 34 H 0.06 -0.06 7.89 -51.93 -0.41 -0.47 16 35 H 0.07 -0.03 5.48 -51.93 -0.28 -0.32 16 36 H 0.06 -0.10 7.93 -51.93 -0.41 -0.51 16 37 H 0.10 0.43 6.16 -51.93 -0.32 0.11 16 38 H 0.07 0.03 8.14 -51.93 -0.42 -0.39 16 39 H 0.05 0.04 6.22 -51.92 -0.32 -0.28 16 40 H 0.09 0.15 8.14 -51.93 -0.42 -0.28 16 41 H 0.05 0.05 7.18 -51.93 -0.37 -0.33 16 42 H 0.09 0.14 8.14 -51.93 -0.42 -0.29 16 43 H 0.06 0.03 8.05 -51.93 -0.42 -0.39 16 44 H 0.11 0.36 3.23 -52.31 -0.17 0.19 16 45 H 0.34 0.03 8.23 -40.82 -0.34 -0.31 16 LS Contribution 333.69 15.07 5.03 5.03 Total: 0.00 -5.36 333.69 -7.01 -12.37 By element: Atomic # 1 Polarization: 0.70 SS G_CDS: -7.35 Total: -6.65 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: 0.39 Total: 0.55 kcal Atomic # 7 Polarization: -0.75 SS G_CDS: 0.21 Total: -0.55 kcal Atomic # 8 Polarization: -4.12 SS G_CDS: -0.32 Total: -4.45 kcal Atomic # 14 Polarization: -1.33 SS G_CDS: -4.96 Total: -6.30 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -5.36 -7.01 -12.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493581859.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.470 kcal (2) G-P(sol) polarization free energy of solvation -5.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds