Wall clock time and date at job start Tue Mar 31 2020 05:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47383 * 2 1 4 4 C 1.50697 * 109.47119 * 239.99600 * 2 1 3 5 5 H 1.07997 * 120.00053 * 239.99996 * 4 2 1 6 6 C 1.37879 * 119.99749 * 60.00462 * 4 2 1 7 7 N 1.31508 * 120.00358 * 359.97438 * 6 4 2 8 8 Si 1.86809 * 119.99853 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46834 * 89.99711 * 8 6 4 10 10 H 1.48493 * 109.46993 * 209.99944 * 8 6 4 11 11 H 1.48499 * 109.46980 * 330.00296 * 8 6 4 12 12 C 1.52996 * 109.46815 * 119.99894 * 2 1 3 13 13 N 1.46504 * 109.47253 * 299.99999 * 12 2 1 14 14 C 1.34775 * 119.99768 * 180.02562 * 13 12 2 15 15 O 1.21608 * 120.00553 * 359.97438 * 14 13 12 16 16 C 1.47106 * 119.99582 * 179.97438 * 14 13 12 17 17 C 1.32997 * 120.00135 * 180.02562 * 16 14 13 18 18 C 1.50697 * 120.00105 * 179.97438 * 17 16 14 19 19 C 1.53175 * 109.54085 * 120.00210 * 18 17 16 20 20 C 1.53092 * 109.16344 * 176.84900 * 19 18 17 21 21 O 1.42905 * 109.41215 * 302.38824 * 20 19 18 22 22 C 1.42905 * 114.09831 * 61.16158 * 21 20 19 23 23 C 1.53098 * 109.41155 * 298.83847 * 22 21 20 24 24 H 1.08992 * 109.47050 * 300.00491 * 1 2 3 25 25 H 1.09006 * 109.46733 * 60.00377 * 1 2 3 26 26 H 1.08998 * 109.47064 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47379 * 179.97438 * 3 2 1 28 28 H 1.09008 * 109.47135 * 300.00003 * 3 2 1 29 29 H 1.09005 * 109.47140 * 59.99676 * 3 2 1 30 30 H 0.96998 * 120.00540 * 180.02562 * 7 6 4 31 31 H 1.08997 * 109.47386 * 179.97438 * 12 2 1 32 32 H 1.09004 * 109.47576 * 59.99949 * 12 2 1 33 33 H 0.96993 * 119.99712 * 0.02562 * 13 12 2 34 34 H 1.07994 * 120.00274 * 359.97438 * 16 14 13 35 35 H 1.08006 * 119.99597 * 0.02562 * 17 16 14 36 36 H 1.08996 * 109.54186 * 359.82575 * 18 17 16 37 37 H 1.09004 * 109.52714 * 56.93920 * 19 18 17 38 38 H 1.09001 * 109.57654 * 296.78651 * 19 18 17 39 39 H 1.08997 * 109.48111 * 182.40965 * 20 19 18 40 40 H 1.09000 * 109.48212 * 62.37239 * 20 19 18 41 41 H 1.09000 * 109.47932 * 58.81878 * 22 21 20 42 42 H 1.08993 * 109.48024 * 178.86013 * 22 21 20 43 43 H 1.08996 * 109.52270 * 297.70307 * 23 22 21 44 44 H 1.08995 * 109.57012 * 177.54155 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0079 9 1 1.3448 -2.1617 -4.4123 10 1 2.4874 -0.1404 -5.1120 11 1 3.6309 -1.7568 -3.7118 12 6 2.0400 -0.7212 1.2492 13 7 1.5516 -0.0306 2.4454 14 6 1.8776 -0.4908 3.6695 15 8 2.5767 -1.4795 3.7812 16 6 1.3876 0.2031 4.8706 17 6 1.7097 -0.2507 6.0786 18 6 1.2083 0.4604 7.3089 19 6 0.3575 -0.5005 8.1451 20 6 -0.0818 0.2058 9.4303 21 8 1.0724 0.6471 10.1482 22 6 1.8809 1.5842 9.4337 23 6 2.3991 0.9332 8.1486 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 3.1301 1.4424 0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 0.7083 1.1608 -3.4844 31 1 3.1299 -0.7217 1.2491 32 1 1.6766 -1.7489 1.2493 33 1 0.9937 0.7578 2.3564 34 1 0.7671 1.0814 4.7715 35 1 2.3313 -1.1284 6.1777 36 1 0.6050 1.3188 7.0135 37 1 0.9458 -1.3828 8.3972 38 1 -0.5220 -0.7999 7.5751 39 1 -0.6518 -0.4870 10.0492 40 1 -0.7038 1.0648 9.1787 41 1 1.2845 2.4612 9.1821 42 1 2.7247 1.8841 10.0550 43 1 3.0286 0.0799 8.4007 44 1 2.9801 1.6593 7.5801 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493754963.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:21 Heat of formation + Delta-G solvation = -91.264931 kcal Electronic energy + Delta-G solvation = -21838.125866 eV Core-core repulsion = 18561.927023 eV Total energy + Delta-G solvation = -3276.198843 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.80691 -39.15398 -36.47751 -35.43767 -33.25523 -31.64134 -31.43047 -30.72105 -26.38159 -25.73771 -25.40484 -24.57952 -23.85233 -21.70381 -20.34500 -19.45427 -18.71543 -17.28425 -16.31879 -16.31009 -15.79668 -15.42061 -15.07733 -14.66067 -14.65983 -14.39149 -14.16420 -13.62963 -12.93955 -12.81739 -12.75495 -12.70849 -12.24513 -12.18373 -11.67358 -11.41433 -11.30602 -11.26743 -11.19910 -10.87588 -10.70306 -10.64583 -10.39979 -10.21397 -9.91628 -9.64575 -9.58275 -9.40212 -9.25202 -8.79784 -8.44902 -8.29544 -6.03067 -4.13134 1.47307 3.27677 3.34630 3.38571 3.54920 3.65681 3.76440 4.37730 4.43495 4.50391 4.50546 4.68201 4.90008 4.95179 5.07401 5.19581 5.23715 5.26409 5.34948 5.39425 5.52318 5.52439 5.68561 5.77651 5.93087 6.17813 6.32318 6.40579 6.41003 6.51945 6.77626 6.81405 6.85815 6.93951 7.00924 7.03851 7.34673 7.54569 7.68516 7.99841 8.06787 8.16044 8.37770 8.72053 8.87841 9.52738 10.98405 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.046809 B = 0.002635 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.033363 B =10623.340650 C =10711.841390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.506 4.506 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.131 3.869 13 N -0.711 5.711 14 C 0.532 3.468 15 O -0.559 6.559 16 C -0.201 4.201 17 C -0.073 4.073 18 C -0.066 4.066 19 C -0.149 4.149 20 C 0.061 3.939 21 O -0.385 6.385 22 C 0.061 3.939 23 C -0.149 4.149 24 H 0.006 0.994 25 H 0.086 0.914 26 H 0.026 0.974 27 H 0.026 0.974 28 H 0.086 0.914 29 H 0.006 0.994 30 H 0.260 0.740 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.398 0.602 34 H 0.122 0.878 35 H 0.127 0.873 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.095 0.905 40 H 0.051 0.949 41 H 0.051 0.949 42 H 0.095 0.905 43 H 0.076 0.924 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.540 3.617 20.437 20.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.545 4.545 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.008 3.992 13 N -0.360 5.360 14 C 0.320 3.680 15 O -0.440 6.440 16 C -0.222 4.222 17 C -0.093 4.093 18 C -0.084 4.084 19 C -0.187 4.187 20 C -0.016 4.016 21 O -0.304 6.304 22 C -0.016 4.016 23 C -0.187 4.187 24 H 0.025 0.975 25 H 0.104 0.896 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.104 0.896 29 H 0.025 0.975 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.234 0.766 34 H 0.140 0.860 35 H 0.144 0.856 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.113 0.887 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.113 0.887 43 H 0.095 0.905 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.079 2.972 20.495 20.813 hybrid contribution -0.047 0.047 -1.374 1.376 sum -2.126 3.019 19.120 19.474 Atomic orbital electron populations 1.21836 0.97773 0.99189 1.00088 1.18354 0.92791 0.92762 0.90580 1.21834 0.98601 0.98357 1.00084 1.20993 1.31471 1.12086 0.89906 0.92436 1.24881 0.94871 0.94907 0.98859 1.69798 1.36718 1.22764 1.23229 0.86568 0.79339 0.79387 0.82568 1.20701 1.21253 1.19900 1.21725 0.98158 0.95808 0.83470 1.46241 1.52129 1.31579 1.06045 1.18576 0.80860 0.84457 0.84110 1.90745 1.39137 1.26881 1.87212 1.22789 1.04188 1.02064 0.93151 1.23553 0.95149 0.97945 0.92686 1.20437 0.96690 0.98004 0.93297 1.22218 1.00707 0.99236 0.96512 1.22594 0.87543 0.98286 0.93151 1.87937 1.37788 1.62301 1.42328 1.22593 0.94760 0.91018 0.93198 1.22218 0.97873 1.02087 0.96488 0.97502 0.89565 0.95441 0.95432 0.89570 0.97500 0.93001 0.92705 0.92715 0.76645 0.85981 0.85568 0.90202 0.90512 0.90380 0.88707 0.93088 0.93088 0.88706 0.90508 0.90378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 2 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 3 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 4 C -0.51 -13.32 8.01 -34.44 -0.28 -13.60 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 7 N -0.89 -23.64 9.35 55.43 0.52 -23.12 16 8 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 12 C 0.13 2.83 4.50 -4.04 -0.02 2.81 16 13 N -0.71 -12.89 4.95 -61.49 -0.30 -13.19 16 14 C 0.53 9.46 7.76 -12.66 -0.10 9.36 16 15 O -0.56 -11.98 16.22 5.27 0.09 -11.89 16 16 C -0.20 -2.62 9.64 -37.80 -0.36 -2.98 16 17 C -0.07 -0.85 8.36 -36.13 -0.30 -1.15 16 18 C -0.07 -0.57 2.57 -91.59 -0.24 -0.81 16 19 C -0.15 -1.19 5.40 -26.59 -0.14 -1.34 16 20 C 0.06 0.45 6.84 37.20 0.25 0.71 16 21 O -0.38 -3.60 10.77 -35.23 -0.38 -3.98 16 22 C 0.06 0.45 6.84 37.21 0.25 0.71 16 23 C -0.15 -1.19 5.41 -26.59 -0.14 -1.34 16 24 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 25 H 0.09 2.15 6.07 -51.93 -0.32 1.83 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.09 2.15 6.07 -51.92 -0.32 1.83 16 29 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 30 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 31 H 0.05 1.25 8.14 -51.93 -0.42 0.82 16 32 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.40 6.46 6.15 -40.82 -0.25 6.21 16 34 H 0.12 1.27 7.87 -52.49 -0.41 0.86 16 35 H 0.13 1.64 7.49 -52.48 -0.39 1.25 16 36 H 0.08 0.63 7.81 -51.93 -0.41 0.23 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 348.24 15.07 5.25 5.25 Total: -1.00 -29.48 348.24 -7.92 -37.40 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -7.42 Total: 3.88 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: -0.64 Total: -10.08 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: 0.21 Total: -36.31 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: -0.29 Total: -15.88 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.48 -7.92 -37.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493754963.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.866 kcal (2) G-P(sol) polarization free energy of solvation -29.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds