Wall clock time and date at job start Tue Mar 31 2020 05:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47258 * 2 1 4 4 C 1.53005 * 109.46862 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.46766 * 65.00171 * 4 3 2 6 6 C 1.34784 * 119.99536 * 204.99526 * 5 4 3 7 7 O 1.21606 * 120.00357 * 0.02562 * 6 5 4 8 8 C 1.47103 * 119.99864 * 179.97438 * 6 5 4 9 9 C 1.32993 * 119.99935 * 130.90040 * 8 6 5 10 10 C 1.50705 * 119.99984 * 326.79703 * 9 8 6 11 11 C 1.52993 * 109.54645 * 232.25479 * 10 9 8 12 12 C 1.53179 * 109.53797 * 112.07600 * 10 9 8 13 13 C 1.53112 * 109.15429 * 183.24128 * 12 10 9 14 14 O 1.42900 * 109.48547 * 57.47816 * 13 12 10 15 15 C 1.42905 * 114.09694 * 298.88819 * 14 13 12 16 16 C 1.53089 * 109.41531 * 61.15948 * 15 14 13 17 17 C 1.50699 * 109.46867 * 185.00062 * 4 3 2 18 18 N 1.27941 * 120.00405 * 125.00230 * 17 4 3 19 19 Si 1.86800 * 119.99970 * 305.00006 * 17 4 3 20 20 H 1.48504 * 109.47163 * 0.02562 * 19 17 4 21 21 H 1.48507 * 109.47191 * 119.99917 * 19 17 4 22 22 H 1.48501 * 109.47123 * 240.00115 * 19 17 4 23 23 H 1.08995 * 109.47253 * 300.00270 * 1 2 3 24 24 H 1.09003 * 109.46909 * 59.99916 * 1 2 3 25 25 H 1.08998 * 109.47289 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47253 * 239.99730 * 2 1 3 27 27 H 1.09003 * 109.46909 * 120.00084 * 2 1 3 28 28 H 1.09002 * 109.46946 * 59.99947 * 3 2 1 29 29 H 1.08998 * 109.46956 * 299.99496 * 3 2 1 30 30 H 1.08998 * 109.47195 * 304.99732 * 4 3 2 31 31 H 0.97002 * 120.00614 * 24.99956 * 5 4 3 32 32 H 1.07996 * 119.99899 * 310.90631 * 8 6 5 33 33 H 1.08000 * 120.00308 * 146.80205 * 9 8 6 34 34 H 1.09003 * 109.46828 * 59.80934 * 11 10 9 35 35 H 1.09002 * 109.47529 * 179.81427 * 11 10 9 36 36 H 1.09003 * 109.46976 * 299.81751 * 11 10 9 37 37 H 1.08992 * 109.52497 * 303.05959 * 12 10 9 38 38 H 1.08997 * 109.52195 * 63.25270 * 12 10 9 39 39 H 1.09004 * 109.40291 * 297.49560 * 13 12 10 40 40 H 1.08996 * 109.49013 * 177.51530 * 13 12 10 41 41 H 1.08998 * 109.48347 * 301.17452 * 15 14 13 42 42 H 1.09004 * 109.48769 * 181.14929 * 15 14 13 43 43 H 1.09003 * 109.52408 * 182.48911 * 16 15 14 44 44 H 1.09000 * 109.57404 * 62.32739 * 16 15 14 45 45 H 0.97006 * 119.99222 * 359.97438 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0588 0.8585 -1.2509 6 6 5.2809 0.2919 -1.2981 7 8 5.9775 0.2650 -0.3017 8 6 5.7715 -0.2949 -2.5546 9 6 6.9844 0.0142 -3.0038 10 6 7.5511 1.3889 -2.7585 11 6 8.0260 1.9906 -4.0826 12 6 8.7318 1.2905 -1.7876 13 6 9.2491 2.6987 -1.4814 14 8 8.1878 3.4899 -0.9432 15 6 7.0775 3.6557 -1.8274 16 6 6.4715 2.2863 -2.1458 17 6 4.0724 2.8578 0.1245 18 7 4.8845 3.1687 1.0630 19 14 3.5095 4.1585 -1.0924 20 1 2.5773 3.5477 -2.0739 21 1 2.8147 5.2503 -0.3638 22 1 4.6882 4.7116 -1.8064 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6768 1.9563 -0.8900 30 1 3.9330 0.8531 0.8427 31 1 3.5030 0.8797 -2.0456 32 1 5.1466 -0.9767 -3.1123 33 1 7.5634 -0.7199 -3.5446 34 1 7.1850 2.0598 -4.7726 35 1 8.4326 2.9861 -3.9043 36 1 8.7987 1.3545 -4.5143 37 1 8.4045 0.8151 -0.8631 38 1 9.5276 0.6992 -2.2405 39 1 9.6151 3.1577 -2.3999 40 1 10.0611 2.6383 -0.7567 41 1 7.4149 4.1273 -2.7504 42 1 6.3248 4.2847 -1.3520 43 1 5.6523 2.4064 -2.8547 44 1 6.0964 1.8310 -1.2292 45 1 5.1765 2.4933 1.6951 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493829188.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:41 Heat of formation + Delta-G solvation = -31.502973 kcal Electronic energy + Delta-G solvation = -24880.004956 eV Core-core repulsion = 21592.741847 eV Total energy + Delta-G solvation = -3287.263109 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.186 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.11114 -40.22480 -38.31355 -36.64302 -35.57268 -34.42026 -32.74110 -31.98069 -30.17328 -28.88262 -26.01714 -25.14988 -24.62907 -23.54722 -22.16434 -21.73312 -20.91060 -19.68463 -18.29823 -17.62675 -17.35621 -16.90815 -16.74551 -16.31762 -15.91081 -15.81848 -15.69251 -15.63488 -14.90777 -14.74214 -14.43284 -14.33486 -13.96810 -13.80378 -13.53502 -13.35928 -12.99599 -12.93289 -12.66741 -12.49341 -12.28043 -12.19947 -12.12440 -12.02028 -11.79358 -11.67316 -11.55822 -11.41297 -11.05443 -10.88414 -10.78866 -10.30151 -9.91971 -9.66126 0.28735 0.85034 1.15250 1.41109 1.70325 1.84738 1.92140 2.29482 3.09837 3.50075 3.55793 3.56807 3.71953 3.85471 3.86977 3.89281 4.10900 4.13788 4.16697 4.30899 4.32240 4.38848 4.44689 4.46431 4.59333 4.59675 4.62876 4.68813 4.70712 4.81741 4.82082 4.86252 4.96132 4.96758 5.01063 5.06588 5.08044 5.12956 5.17630 5.26177 5.26388 5.33502 5.37181 5.53217 6.38504 6.41531 6.94528 7.16159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.122 4.122 3 C -0.133 4.133 4 C 0.121 3.879 5 N -0.726 5.726 6 C 0.573 3.427 7 O -0.531 6.531 8 C -0.236 4.236 9 C -0.053 4.053 10 C -0.043 4.043 11 C -0.142 4.142 12 C -0.144 4.144 13 C 0.058 3.942 14 O -0.373 6.373 15 C 0.057 3.943 16 C -0.195 4.195 17 C -0.054 4.054 18 N -0.598 5.598 19 Si 1.044 2.956 20 H -0.247 1.247 21 H -0.246 1.246 22 H -0.239 1.239 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.404 0.596 32 H 0.143 0.857 33 H 0.131 0.869 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.050 0.950 40 H 0.093 0.907 41 H 0.048 0.952 42 H 0.098 0.902 43 H 0.069 0.931 44 H 0.118 0.882 45 H 0.331 0.669 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.622 -1.204 -5.157 6.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.159 4.159 3 C -0.171 4.171 4 C 0.014 3.986 5 N -0.380 5.380 6 C 0.364 3.636 7 O -0.410 6.410 8 C -0.257 4.257 9 C -0.072 4.072 10 C -0.043 4.043 11 C -0.199 4.199 12 C -0.182 4.182 13 C -0.018 4.018 14 O -0.291 6.291 15 C -0.019 4.019 16 C -0.232 4.232 17 C -0.302 4.302 18 N -0.210 5.210 19 Si 0.859 3.141 20 H -0.171 1.171 21 H -0.169 1.169 22 H -0.163 1.163 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.104 0.896 29 H 0.096 0.904 30 H 0.113 0.887 31 H 0.239 0.761 32 H 0.161 0.839 33 H 0.149 0.851 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.103 0.897 38 H 0.092 0.908 39 H 0.068 0.932 40 H 0.111 0.889 41 H 0.066 0.934 42 H 0.115 0.885 43 H 0.088 0.912 44 H 0.136 0.864 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.882 0.344 -4.485 5.343 hybrid contribution -0.272 -1.880 -0.138 1.905 sum -3.155 -1.536 -4.623 5.804 Atomic orbital electron populations 1.21786 0.95301 1.02040 1.02077 1.21500 0.96199 0.95673 1.02575 1.21981 0.92413 0.98681 1.04052 1.21391 0.95205 0.93304 0.88734 1.46329 1.18776 1.59555 1.13326 1.18394 0.80565 0.75265 0.89355 1.90878 1.56238 1.57723 1.36155 1.22611 0.98392 1.07398 0.97266 1.23587 0.93113 0.95101 0.95444 1.19861 0.96131 0.92217 0.96085 1.21924 1.01510 1.01212 0.95230 1.22272 0.97190 0.98462 1.00271 1.22607 0.90006 0.90177 0.99059 1.88007 1.27915 1.71151 1.42038 1.22809 0.89187 0.95796 0.94120 1.23311 0.98263 0.97581 1.04013 1.32021 0.95253 1.01325 1.01642 1.69279 1.06091 1.42041 1.03552 0.83960 0.79670 0.75240 0.75226 1.17079 1.16900 1.16315 0.92522 0.92514 0.92501 0.91666 0.91801 0.89647 0.90396 0.88678 0.76090 0.83911 0.85104 0.92064 0.91592 0.91886 0.89745 0.90820 0.93174 0.88908 0.93422 0.88457 0.91207 0.86441 0.85072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.36 9.91 37.16 0.37 0.72 16 2 C -0.12 0.28 5.82 -26.73 -0.16 0.12 16 3 C -0.13 0.33 4.18 -26.73 -0.11 0.22 16 4 C 0.12 -0.08 2.13 -69.08 -0.15 -0.23 16 5 N -0.73 0.98 3.76 -60.97 -0.23 0.75 16 6 C 0.57 0.64 4.08 -12.66 -0.05 0.59 16 7 O -0.53 -2.65 14.55 5.27 0.08 -2.57 16 8 C -0.24 0.18 9.45 -37.81 -0.36 -0.17 16 9 C -0.05 0.03 8.63 -36.12 -0.31 -0.28 16 10 C -0.04 -0.01 0.64 -155.48 -0.10 -0.11 16 11 C -0.14 0.16 7.91 37.15 0.29 0.46 16 12 C -0.14 -0.22 4.91 -26.58 -0.13 -0.35 16 13 C 0.06 0.12 6.57 37.22 0.24 0.36 16 14 O -0.37 -1.78 10.77 -35.23 -0.38 -2.16 16 15 C 0.06 0.15 6.37 37.20 0.24 0.39 16 16 C -0.19 -0.25 2.37 -26.59 -0.06 -0.31 16 17 C -0.05 -0.04 4.02 -13.90 -0.06 -0.09 16 18 N -0.60 -1.72 13.48 56.23 0.76 -0.96 16 19 Si 1.04 -0.47 26.12 -169.99 -4.44 -4.91 16 20 H -0.25 0.62 6.71 56.52 0.38 1.00 16 21 H -0.25 -0.12 7.11 56.52 0.40 0.29 16 22 H -0.24 0.02 5.18 56.52 0.29 0.31 16 23 H 0.06 -0.12 8.14 -51.93 -0.42 -0.54 16 24 H 0.06 -0.15 8.14 -51.93 -0.42 -0.57 16 25 H 0.06 -0.11 8.14 -51.93 -0.42 -0.53 16 26 H 0.06 -0.17 7.75 -51.93 -0.40 -0.57 16 27 H 0.06 -0.08 8.14 -51.93 -0.42 -0.51 16 28 H 0.08 -0.23 8.14 -51.93 -0.42 -0.65 16 29 H 0.08 -0.28 6.64 -51.93 -0.34 -0.63 16 30 H 0.10 0.10 7.27 -51.93 -0.38 -0.28 16 31 H 0.40 -1.58 8.59 -40.82 -0.35 -1.94 16 32 H 0.14 -0.47 8.06 -52.49 -0.42 -0.89 16 33 H 0.13 -0.30 8.06 -52.49 -0.42 -0.72 16 34 H 0.06 -0.10 8.14 -51.93 -0.42 -0.53 16 35 H 0.07 -0.04 5.02 -51.93 -0.26 -0.30 16 36 H 0.06 -0.12 8.14 -51.93 -0.42 -0.54 16 37 H 0.08 0.35 7.42 -51.93 -0.39 -0.03 16 38 H 0.07 0.00 8.14 -51.93 -0.42 -0.42 16 39 H 0.05 0.04 6.61 -51.93 -0.34 -0.31 16 40 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 41 H 0.05 0.07 6.60 -51.93 -0.34 -0.28 16 42 H 0.10 0.29 4.99 -51.93 -0.26 0.03 16 43 H 0.07 -0.02 7.99 -51.93 -0.41 -0.43 16 44 H 0.12 0.28 2.17 -61.63 -0.13 0.15 16 45 H 0.33 1.02 8.53 -40.82 -0.35 0.67 16 LS Contribution 333.65 15.07 5.03 5.03 Total: 0.00 -4.96 333.65 -7.07 -12.02 By element: Atomic # 1 Polarization: -0.98 SS G_CDS: -7.54 Total: -8.52 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -0.34 Total: 1.32 kcal Atomic # 7 Polarization: -0.74 SS G_CDS: 0.53 Total: -0.21 kcal Atomic # 8 Polarization: -4.43 SS G_CDS: -0.30 Total: -4.73 kcal Atomic # 14 Polarization: -0.47 SS G_CDS: -4.44 Total: -4.91 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -4.96 -7.07 -12.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493829188.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.478 kcal (2) G-P(sol) polarization free energy of solvation -4.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds