Wall clock time and date at job start Tue Mar 31 2020 05:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47258 * 2 1 4 4 C 1.53005 * 109.46862 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.46766 * 65.00171 * 4 3 2 6 6 C 1.34784 * 119.99536 * 204.99526 * 5 4 3 7 7 O 1.21606 * 120.00357 * 0.02562 * 6 5 4 8 8 C 1.47103 * 119.99864 * 179.97438 * 6 5 4 9 9 C 1.32993 * 119.99935 * 130.90040 * 8 6 5 10 10 C 1.50705 * 119.99984 * 326.79703 * 9 8 6 11 11 C 1.52993 * 109.54645 * 232.25479 * 10 9 8 12 12 C 1.53179 * 109.53797 * 112.07600 * 10 9 8 13 13 C 1.53112 * 109.15429 * 183.24128 * 12 10 9 14 14 O 1.42900 * 109.48547 * 57.47816 * 13 12 10 15 15 C 1.42905 * 114.09694 * 298.88819 * 14 13 12 16 16 C 1.53089 * 109.41531 * 61.15948 * 15 14 13 17 17 C 1.50699 * 109.46867 * 185.00062 * 4 3 2 18 18 N 1.27941 * 120.00405 * 125.00230 * 17 4 3 19 19 Si 1.86800 * 119.99970 * 305.00006 * 17 4 3 20 20 H 1.48504 * 109.47163 * 0.02562 * 19 17 4 21 21 H 1.48507 * 109.47191 * 119.99917 * 19 17 4 22 22 H 1.48501 * 109.47123 * 240.00115 * 19 17 4 23 23 H 1.08995 * 109.47253 * 300.00270 * 1 2 3 24 24 H 1.09003 * 109.46909 * 59.99916 * 1 2 3 25 25 H 1.08998 * 109.47289 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47253 * 239.99730 * 2 1 3 27 27 H 1.09003 * 109.46909 * 120.00084 * 2 1 3 28 28 H 1.09002 * 109.46946 * 59.99947 * 3 2 1 29 29 H 1.08998 * 109.46956 * 299.99496 * 3 2 1 30 30 H 1.08998 * 109.47195 * 304.99732 * 4 3 2 31 31 H 0.97002 * 120.00614 * 24.99956 * 5 4 3 32 32 H 1.07996 * 119.99899 * 310.90631 * 8 6 5 33 33 H 1.08000 * 120.00308 * 146.80205 * 9 8 6 34 34 H 1.09003 * 109.46828 * 59.80934 * 11 10 9 35 35 H 1.09002 * 109.47529 * 179.81427 * 11 10 9 36 36 H 1.09003 * 109.46976 * 299.81751 * 11 10 9 37 37 H 1.08992 * 109.52497 * 303.05959 * 12 10 9 38 38 H 1.08997 * 109.52195 * 63.25270 * 12 10 9 39 39 H 1.09004 * 109.40291 * 297.49560 * 13 12 10 40 40 H 1.08996 * 109.49013 * 177.51530 * 13 12 10 41 41 H 1.08998 * 109.48347 * 301.17452 * 15 14 13 42 42 H 1.09004 * 109.48769 * 181.14929 * 15 14 13 43 43 H 1.09003 * 109.52408 * 182.48911 * 16 15 14 44 44 H 1.09000 * 109.57404 * 62.32739 * 16 15 14 45 45 H 0.97006 * 119.99222 * 359.97438 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0588 0.8585 -1.2509 6 6 5.2809 0.2919 -1.2981 7 8 5.9775 0.2650 -0.3017 8 6 5.7715 -0.2949 -2.5546 9 6 6.9844 0.0142 -3.0038 10 6 7.5511 1.3889 -2.7585 11 6 8.0260 1.9906 -4.0826 12 6 8.7318 1.2905 -1.7876 13 6 9.2491 2.6987 -1.4814 14 8 8.1878 3.4899 -0.9432 15 6 7.0775 3.6557 -1.8274 16 6 6.4715 2.2863 -2.1458 17 6 4.0724 2.8578 0.1245 18 7 4.8845 3.1687 1.0630 19 14 3.5095 4.1585 -1.0924 20 1 2.5773 3.5477 -2.0739 21 1 2.8147 5.2503 -0.3638 22 1 4.6882 4.7116 -1.8064 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6768 1.9563 -0.8900 30 1 3.9330 0.8531 0.8427 31 1 3.5030 0.8797 -2.0456 32 1 5.1466 -0.9767 -3.1123 33 1 7.5634 -0.7199 -3.5446 34 1 7.1850 2.0598 -4.7726 35 1 8.4326 2.9861 -3.9043 36 1 8.7987 1.3545 -4.5143 37 1 8.4045 0.8151 -0.8631 38 1 9.5276 0.6992 -2.2405 39 1 9.6151 3.1577 -2.3999 40 1 10.0611 2.6383 -0.7567 41 1 7.4149 4.1273 -2.7504 42 1 6.3248 4.2847 -1.3520 43 1 5.6523 2.4064 -2.8547 44 1 6.0964 1.8310 -1.2292 45 1 5.1765 2.4933 1.6951 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493829188.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:40 Heat of formation + Delta-G solvation = -27.553342 kcal Electronic energy + Delta-G solvation = -24879.833687 eV Core-core repulsion = 21592.741847 eV Total energy + Delta-G solvation = -3287.091840 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.186 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.15939 -40.31863 -38.35046 -36.74616 -35.58295 -34.41177 -32.73504 -32.08557 -30.11406 -28.86899 -25.96909 -25.13427 -24.75226 -23.59158 -22.03348 -21.77401 -20.91301 -19.71282 -18.31218 -17.65139 -17.47346 -17.01382 -16.76612 -16.38063 -15.92511 -15.83425 -15.71922 -15.58056 -14.92119 -14.69855 -14.44103 -14.34728 -13.93618 -13.72627 -13.58922 -13.21761 -12.98169 -12.88288 -12.64950 -12.44783 -12.27784 -12.12939 -12.08240 -11.95928 -11.79374 -11.61870 -11.59279 -11.43383 -11.10490 -10.98294 -10.88353 -10.44225 -9.89470 -9.68170 0.35745 0.80578 1.13335 1.45462 1.72461 1.88256 1.92031 2.33163 2.94131 3.54970 3.56353 3.59199 3.77953 3.82388 3.96371 4.01564 4.03039 4.15183 4.20313 4.23974 4.33361 4.39272 4.52603 4.60657 4.61150 4.61863 4.66489 4.72442 4.73935 4.82889 4.86807 4.92580 4.94554 4.99616 5.06042 5.08450 5.15265 5.24575 5.25940 5.28509 5.36468 5.42908 5.45445 5.55471 6.24686 6.47665 6.82318 7.18980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.129 4.129 4 C 0.125 3.875 5 N -0.712 5.712 6 C 0.569 3.431 7 O -0.577 6.577 8 C -0.237 4.237 9 C -0.057 4.057 10 C -0.045 4.045 11 C -0.138 4.138 12 C -0.140 4.140 13 C 0.053 3.947 14 O -0.405 6.405 15 C 0.052 3.948 16 C -0.197 4.197 17 C -0.051 4.051 18 N -0.631 5.631 19 Si 1.046 2.954 20 H -0.201 1.201 21 H -0.261 1.261 22 H -0.246 1.246 23 H 0.053 0.947 24 H 0.066 0.934 25 H 0.052 0.948 26 H 0.072 0.928 27 H 0.048 0.952 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.071 0.929 31 H 0.419 0.581 32 H 0.172 0.828 33 H 0.152 0.848 34 H 0.072 0.928 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.051 0.949 38 H 0.089 0.911 39 H 0.066 0.934 40 H 0.090 0.910 41 H 0.060 0.940 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.106 0.894 45 H 0.321 0.679 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.670 -1.699 -7.705 9.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.167 4.167 4 C 0.018 3.982 5 N -0.367 5.367 6 C 0.361 3.639 7 O -0.459 6.459 8 C -0.258 4.258 9 C -0.076 4.076 10 C -0.045 4.045 11 C -0.195 4.195 12 C -0.178 4.178 13 C -0.023 4.023 14 O -0.324 6.324 15 C -0.024 4.024 16 C -0.233 4.233 17 C -0.297 4.297 18 N -0.243 5.243 19 Si 0.859 3.141 20 H -0.123 1.123 21 H -0.185 1.185 22 H -0.170 1.170 23 H 0.072 0.928 24 H 0.085 0.915 25 H 0.072 0.928 26 H 0.090 0.910 27 H 0.067 0.933 28 H 0.104 0.896 29 H 0.117 0.883 30 H 0.089 0.911 31 H 0.258 0.742 32 H 0.190 0.810 33 H 0.170 0.830 34 H 0.091 0.909 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.070 0.930 38 H 0.108 0.892 39 H 0.084 0.916 40 H 0.109 0.891 41 H 0.078 0.922 42 H 0.106 0.894 43 H 0.106 0.894 44 H 0.124 0.876 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.970 -0.167 -7.066 8.107 hybrid contribution 0.069 -1.692 0.707 1.835 sum -3.901 -1.860 -6.359 7.689 Atomic orbital electron populations 1.21784 0.94984 1.01954 1.02441 1.21465 0.96372 0.95606 1.02226 1.21989 0.90638 0.98902 1.05172 1.21276 0.96412 0.92163 0.88392 1.46207 1.18358 1.58486 1.13628 1.18782 0.80669 0.74857 0.89556 1.90871 1.57545 1.59561 1.37943 1.22803 0.98768 1.07732 0.96463 1.23761 0.93148 0.94879 0.95828 1.19911 0.95205 0.93023 0.96342 1.21897 1.02238 1.00896 0.94426 1.22199 0.98327 0.97872 0.99356 1.22738 0.89459 0.90491 0.99618 1.87954 1.29048 1.71814 1.43572 1.22908 0.88641 0.96753 0.94097 1.23313 0.99129 0.96842 1.04065 1.32568 0.93732 1.02556 1.00818 1.69355 1.07956 1.42134 1.04832 0.84079 0.80145 0.74464 0.75458 1.12255 1.18489 1.17031 0.92823 0.91483 0.92842 0.90955 0.93301 0.89555 0.88267 0.91100 0.74224 0.81038 0.83041 0.90927 0.92231 0.90775 0.93048 0.89217 0.91563 0.89138 0.92218 0.89437 0.89440 0.87611 0.86139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.83 9.91 71.98 0.71 1.54 16 2 C -0.12 0.59 5.82 30.60 0.18 0.76 16 3 C -0.13 0.71 4.18 30.60 0.13 0.84 16 4 C 0.13 -0.08 2.13 44.25 0.09 0.02 16 5 N -0.71 2.19 3.76 -465.06 -1.75 0.44 16 6 C 0.57 1.44 4.08 86.57 0.35 1.80 16 7 O -0.58 -6.96 14.55 -4.05 -0.06 -7.02 16 8 C -0.24 0.67 9.45 23.43 0.22 0.89 16 9 C -0.06 0.15 8.63 24.52 0.21 0.36 16 10 C -0.04 -0.01 0.64 -52.81 -0.03 -0.04 16 11 C -0.14 0.52 7.91 71.98 0.57 1.09 16 12 C -0.14 -0.54 4.91 30.69 0.15 -0.39 16 13 C 0.05 0.29 6.57 72.02 0.47 0.76 16 14 O -0.40 -4.66 10.77 -148.98 -1.60 -6.27 16 15 C 0.05 0.33 6.37 72.01 0.46 0.78 16 16 C -0.20 -0.53 2.37 30.68 0.07 -0.46 16 17 C -0.05 -0.13 4.02 88.67 0.36 0.23 16 18 N -0.63 -5.35 13.48 24.11 0.33 -5.03 16 19 Si 1.05 -1.38 26.12 68.60 1.79 0.41 16 20 H -0.20 1.69 6.71 99.48 0.67 2.36 16 21 H -0.26 -0.37 7.11 99.48 0.71 0.34 16 22 H -0.25 -0.02 5.18 99.48 0.51 0.49 16 23 H 0.05 -0.24 8.14 -2.39 -0.02 -0.26 16 24 H 0.07 -0.48 8.14 -2.39 -0.02 -0.50 16 25 H 0.05 -0.23 8.14 -2.39 -0.02 -0.25 16 26 H 0.07 -0.45 7.75 -2.39 -0.02 -0.47 16 27 H 0.05 -0.08 8.14 -2.39 -0.02 -0.10 16 28 H 0.09 -0.46 8.14 -2.39 -0.02 -0.48 16 29 H 0.10 -0.96 6.64 -2.39 -0.02 -0.97 16 30 H 0.07 0.33 7.27 -2.39 -0.02 0.32 16 31 H 0.42 -4.09 8.59 -92.71 -0.80 -4.89 16 32 H 0.17 -1.57 8.06 -2.91 -0.02 -1.59 16 33 H 0.15 -1.02 8.06 -2.91 -0.02 -1.04 16 34 H 0.07 -0.42 8.14 -2.39 -0.02 -0.44 16 35 H 0.06 -0.14 5.02 -2.39 -0.01 -0.15 16 36 H 0.07 -0.43 8.14 -2.39 -0.02 -0.45 16 37 H 0.05 0.56 7.42 -2.39 -0.02 0.54 16 38 H 0.09 0.00 8.14 -2.39 -0.02 -0.02 16 39 H 0.07 0.11 6.61 -2.39 -0.02 0.10 16 40 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 41 H 0.06 0.18 6.60 -2.39 -0.02 0.16 16 42 H 0.09 0.66 4.99 -2.38 -0.01 0.64 16 43 H 0.09 -0.15 7.99 -2.39 -0.02 -0.17 16 44 H 0.11 0.63 2.17 -11.50 -0.02 0.60 16 45 H 0.32 3.20 8.53 -92.70 -0.79 2.41 16 Total: 0.00 -15.27 333.65 2.57 -12.71 By element: Atomic # 1 Polarization: -3.33 SS G_CDS: -0.09 Total: -3.42 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: 3.95 Total: 8.17 kcal Atomic # 7 Polarization: -3.16 SS G_CDS: -1.42 Total: -4.59 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: -1.66 Total: -13.29 kcal Atomic # 14 Polarization: -1.38 SS G_CDS: 1.79 Total: 0.41 kcal Total: -15.27 2.57 -12.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493829188.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.847 kcal (2) G-P(sol) polarization free energy of solvation -15.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds