Wall clock time and date at job start Tue Mar 31 2020 05:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42897 * 109.46841 * 2 1 4 4 C 1.52994 * 109.46913 * 119.99979 * 2 1 3 5 5 C 1.50703 * 109.47152 * 177.12563 * 4 2 1 6 6 O 1.21285 * 119.99637 * 4.33663 * 5 4 2 7 7 N 1.34774 * 119.99792 * 184.34222 * 5 4 2 8 8 C 1.46923 * 120.63636 * 359.71519 * 7 5 4 9 9 C 1.52759 * 109.00632 * 233.58743 * 8 7 5 10 10 C 1.53041 * 109.38483 * 305.58501 * 9 8 7 11 11 C 1.50696 * 109.44639 * 181.25980 * 10 9 8 12 12 H 1.08006 * 119.99773 * 245.39129 * 11 10 9 13 13 C 1.37881 * 120.00571 * 65.39435 * 11 10 9 14 14 N 1.31515 * 119.99575 * 9.28095 * 13 11 10 15 15 Si 1.86803 * 120.00021 * 189.28465 * 13 11 10 16 16 H 1.48507 * 109.46956 * 94.98817 * 15 13 11 17 17 H 1.48495 * 109.46960 * 214.98711 * 15 13 11 18 18 H 1.48503 * 109.47355 * 334.98871 * 15 13 11 19 19 C 1.53034 * 109.53734 * 61.24404 * 10 9 8 20 20 C 1.46935 * 120.62507 * 179.97438 * 7 5 4 21 21 C 1.52998 * 109.46787 * 239.99875 * 2 1 3 22 22 C 1.53005 * 117.49607 * 128.62378 * 21 2 1 23 23 C 1.52996 * 117.49893 * 60.00322 * 21 2 1 24 24 H 1.09003 * 109.47178 * 54.90031 * 1 2 3 25 25 H 1.09004 * 109.47033 * 174.89922 * 1 2 3 26 26 H 1.08997 * 109.47260 * 294.90284 * 1 2 3 27 27 H 0.96698 * 113.99840 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.47176 * 297.12418 * 4 2 1 29 29 H 1.09000 * 109.47668 * 57.12065 * 4 2 1 30 30 H 1.09000 * 109.58183 * 353.42030 * 8 7 5 31 31 H 1.08993 * 109.58277 * 113.84321 * 8 7 5 32 32 H 1.09007 * 109.55926 * 185.55317 * 9 8 7 33 33 H 1.09000 * 109.38916 * 65.51474 * 9 8 7 34 34 H 1.09000 * 109.45621 * 301.21983 * 10 9 8 35 35 H 0.97003 * 119.99561 * 180.02562 * 14 13 11 36 36 H 1.08997 * 109.50171 * 178.68417 * 19 10 9 37 37 H 1.09004 * 109.52675 * 58.60161 * 19 10 9 38 38 H 1.08994 * 109.58553 * 246.15527 * 20 7 5 39 39 H 1.08998 * 109.58643 * 6.43981 * 20 7 5 40 40 H 1.08997 * 115.55225 * 274.32677 * 21 2 1 41 41 H 1.09000 * 117.49867 * 359.97438 * 22 21 2 42 42 H 1.08999 * 117.49781 * 145.01585 * 22 21 2 43 43 H 1.09007 * 117.49468 * 214.97202 * 23 21 2 44 44 H 1.08990 * 117.50304 * 359.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5453 -0.7833 1.2142 6 8 4.1544 -0.2304 0.3229 7 7 4.2146 -1.4532 2.1732 8 6 3.4911 -2.1227 3.2626 9 6 4.0509 -1.6425 4.6004 10 6 5.5656 -1.8599 4.6246 11 6 6.1149 -1.4152 5.9556 12 1 6.7878 -0.5720 6.0076 13 6 5.7587 -2.0848 7.1070 14 7 5.0911 -3.2154 7.0304 15 14 6.2241 -1.3861 8.7758 16 1 5.0918 -0.5887 9.3118 17 1 6.5319 -2.4988 9.7098 18 1 7.4186 -0.5155 8.6323 19 6 6.2176 -1.0444 3.5058 20 6 5.6822 -1.5230 2.1521 21 6 2.0400 -0.7213 -1.2492 22 6 3.0741 0.0051 -2.1117 23 6 1.6357 -0.1495 -2.6096 24 1 -0.3634 0.5909 -0.8408 25 1 -0.3633 -1.0236 -0.0914 26 1 -0.3633 0.4327 0.9321 27 1 2.9703 1.4236 -0.0004 28 1 1.7193 -0.1785 2.1384 29 1 1.6351 -1.7329 1.2755 30 1 2.4309 -1.8769 3.2022 31 1 3.6235 -3.2015 3.1802 32 1 3.5895 -2.2052 5.4121 33 1 3.8335 -0.5816 4.7237 34 1 5.7830 -2.9177 4.4772 35 1 4.8402 -3.6863 7.8405 36 1 7.2984 -1.1813 3.5382 37 1 5.9804 0.0112 3.6385 38 1 5.9966 -2.5519 1.9775 39 1 6.0670 -0.8835 1.3577 40 1 2.1267 -1.8045 -1.1642 41 1 3.3909 0.9970 -1.7893 42 1 3.8416 -0.6002 -2.5941 43 1 1.4569 -0.8567 -3.4196 44 1 1.0062 0.7401 -2.6146 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541048546.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:22 Heat of formation + Delta-G solvation = -75.845116 kcal Electronic energy + Delta-G solvation = -23332.139462 eV Core-core repulsion = 20056.609273 eV Total energy + Delta-G solvation = -3275.530190 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.37031 -38.57234 -36.64647 -34.89111 -33.57344 -32.31888 -31.16102 -30.28419 -28.15792 -26.05448 -23.61415 -22.85078 -22.27847 -22.13431 -20.25459 -19.63720 -18.33563 -17.15948 -16.70841 -16.18899 -16.06348 -15.31294 -14.96455 -14.52724 -14.26509 -13.83289 -13.20755 -13.07744 -12.93066 -12.78342 -12.60014 -12.39450 -12.35925 -12.12803 -11.83502 -11.66429 -11.43053 -11.25744 -11.00302 -10.93245 -10.68649 -10.44834 -10.37900 -10.24800 -10.11456 -9.77317 -9.66574 -9.32109 -9.13662 -9.00746 -8.39799 -8.08087 -6.09987 -4.11584 2.90207 3.25795 3.33765 3.36932 3.40164 3.89312 4.30200 4.38636 4.64148 4.72312 4.78226 5.07200 5.13448 5.21381 5.35063 5.39586 5.47943 5.58341 5.61111 5.69989 5.75476 5.79607 5.87971 5.88570 6.00261 6.09112 6.10718 6.13810 6.19873 6.22301 6.33249 6.39355 6.57045 6.82499 6.97076 7.03987 7.13413 7.59121 7.78467 7.83649 7.91107 7.91400 8.35359 8.49315 8.92091 9.52604 10.98701 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.034369 B = 0.003878 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.498587 B = 7218.361858 C = 7505.982170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.179 3.821 3 O -0.565 6.565 4 C -0.168 4.168 5 C 0.514 3.486 6 O -0.554 6.554 7 N -0.598 5.598 8 C 0.103 3.897 9 C -0.119 4.119 10 C 0.047 3.953 11 C -0.516 4.516 12 H 0.055 0.945 13 C 0.064 3.936 14 N -0.889 5.889 15 Si 0.887 3.113 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.274 1.274 19 C -0.123 4.123 20 C 0.111 3.889 21 C -0.172 4.172 22 C -0.139 4.139 23 C -0.185 4.185 24 H 0.065 0.935 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.387 0.613 28 H 0.101 0.899 29 H 0.097 0.903 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.041 0.959 34 H 0.034 0.966 35 H 0.260 0.740 36 H 0.061 0.939 37 H 0.051 0.949 38 H 0.059 0.941 39 H 0.079 0.921 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.170 2.409 -13.574 16.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.138 3.862 3 O -0.376 6.376 4 C -0.208 4.208 5 C 0.302 3.698 6 O -0.435 6.435 7 N -0.329 5.329 8 C -0.020 4.020 9 C -0.157 4.157 10 C 0.029 3.971 11 C -0.554 4.554 12 H 0.073 0.927 13 C -0.137 4.137 14 N -0.528 5.528 15 Si 0.715 3.285 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.199 1.199 19 C -0.161 4.161 20 C -0.011 4.011 21 C -0.190 4.190 22 C -0.176 4.176 23 C -0.222 4.222 24 H 0.084 0.916 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.241 0.759 28 H 0.119 0.881 29 H 0.116 0.884 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.104 0.896 33 H 0.060 0.940 34 H 0.052 0.948 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.098 0.902 40 H 0.117 0.883 41 H 0.116 0.884 42 H 0.104 0.896 43 H 0.104 0.896 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.533 2.664 -13.903 16.529 hybrid contribution 0.804 -0.078 1.268 1.504 sum -7.729 2.586 -12.635 15.036 Atomic orbital electron populations 1.21720 0.92399 1.02270 1.02836 1.20289 0.93653 0.81917 0.90345 1.86385 1.29123 1.25401 1.96703 1.22472 0.93625 1.03496 1.01180 1.20492 0.89697 0.78262 0.81332 1.90555 1.70027 1.47031 1.35863 1.48229 1.07636 1.51784 1.25289 1.21933 0.95047 0.96743 0.88231 1.21871 1.00376 0.99754 0.93713 1.18641 0.90380 0.95787 0.92332 1.21172 1.28110 1.14724 0.91351 0.92691 1.24951 0.95291 0.94417 0.99071 1.69948 1.39981 1.14464 1.28361 0.86663 0.78828 0.78834 0.84210 1.20710 1.21299 1.19895 1.22004 0.99835 1.00311 0.93921 1.21712 0.78808 1.00961 0.99587 1.22818 1.05421 0.99001 0.91807 1.22663 0.91153 1.02139 1.01612 1.22982 0.99619 1.02991 0.96618 0.91625 0.91209 0.91910 0.75945 0.88054 0.88445 0.91406 0.91814 0.89581 0.93973 0.94772 0.92995 0.92070 0.93045 0.92309 0.90246 0.88329 0.88404 0.89621 0.89580 0.88915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 8.61 37.16 0.32 -1.05 16 2 C 0.18 2.20 0.92 -90.62 -0.08 2.12 16 3 O -0.56 -8.06 12.12 -52.85 -0.64 -8.70 16 4 C -0.17 -2.11 3.33 -27.88 -0.09 -2.20 16 5 C 0.51 8.01 7.19 -10.98 -0.08 7.93 16 6 O -0.55 -9.32 10.78 -12.06 -0.13 -9.45 16 7 N -0.60 -9.97 2.98 -173.01 -0.52 -10.49 16 8 C 0.10 1.72 6.28 -3.94 -0.02 1.69 16 9 C -0.12 -2.49 5.19 -26.83 -0.14 -2.62 16 10 C 0.05 1.09 1.93 -91.73 -0.18 0.92 16 11 C -0.52 -13.55 8.48 -34.44 -0.29 -13.85 16 12 H 0.05 1.45 7.77 -52.48 -0.41 1.05 16 13 C 0.06 1.71 5.20 -17.82 -0.09 1.62 16 14 N -0.89 -24.26 12.14 55.43 0.67 -23.59 16 15 Si 0.89 20.65 29.55 -169.99 -5.02 15.63 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 19 C -0.12 -2.44 5.30 -26.59 -0.14 -2.58 16 20 C 0.11 1.95 6.44 -3.68 -0.02 1.92 16 21 C -0.17 -2.08 4.00 -90.62 -0.36 -2.44 16 22 C -0.14 -1.74 7.98 -26.73 -0.21 -1.95 16 23 C -0.19 -2.02 9.73 -26.73 -0.26 -2.28 16 24 H 0.06 0.66 7.47 -51.93 -0.39 0.27 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.39 5.71 5.30 45.56 0.24 5.95 16 28 H 0.10 1.27 7.88 -51.93 -0.41 0.86 16 29 H 0.10 1.05 7.74 -51.93 -0.40 0.65 16 30 H 0.07 0.95 5.95 -51.93 -0.31 0.64 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.09 2.01 6.86 -51.92 -0.36 1.65 16 33 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.03 0.87 8.09 -51.93 -0.42 0.45 16 35 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.08 1.37 7.00 -51.93 -0.36 1.00 16 40 H 0.10 1.19 8.11 -51.93 -0.42 0.77 16 41 H 0.10 1.31 6.29 -51.93 -0.33 0.98 16 42 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 44 H 0.09 1.01 7.66 -51.93 -0.40 0.61 16 LS Contribution 337.17 15.07 5.08 5.08 Total: -1.00 -27.66 337.17 -9.11 -36.77 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -6.90 Total: 7.53 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -1.66 Total: -12.78 kcal Atomic # 7 Polarization: -34.24 SS G_CDS: 0.16 Total: -34.08 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -0.77 Total: -18.15 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -27.66 -9.11 -36.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541048546.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.071 kcal (2) G-P(sol) polarization free energy of solvation -27.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds