Wall clock time and date at job start Tue Mar 31 2020 06:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50706 * 119.99850 * 2 1 4 4 O 1.42895 * 109.46976 * 134.99725 * 3 2 1 5 5 C 1.42906 * 113.99801 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.46998 * 180.02562 * 5 4 3 7 7 C 1.52997 * 109.46922 * 180.02562 * 6 5 4 8 8 C 1.50700 * 109.47382 * 179.97438 * 7 6 5 9 9 O 1.21283 * 119.99658 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00452 * 179.97438 * 8 7 6 11 11 C 1.46926 * 120.63302 * 180.02562 * 10 8 7 12 12 C 1.53191 * 108.89109 * 233.67613 * 11 10 8 13 13 C 1.53035 * 109.31327 * 305.29292 * 12 11 10 14 14 C 1.50709 * 109.45964 * 181.37529 * 13 12 11 15 15 H 1.07997 * 119.99916 * 359.97438 * 14 13 12 16 16 C 1.37872 * 119.99864 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99852 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 120.00061 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.47126 * 90.00041 * 18 16 14 20 20 H 1.48500 * 109.47187 * 209.99810 * 18 16 14 21 21 H 1.48499 * 109.47129 * 329.99807 * 18 16 14 22 22 C 1.53038 * 109.54175 * 61.36680 * 13 12 11 23 23 C 1.47207 * 120.81153 * 0.14103 * 10 8 7 24 24 H 1.08008 * 120.00193 * 0.02562 * 1 2 3 25 25 H 1.08004 * 120.00420 * 180.02562 * 1 2 3 26 26 H 1.07994 * 120.00228 * 179.97438 * 2 1 3 27 27 H 1.09002 * 109.47225 * 14.99497 * 3 2 1 28 28 H 1.09000 * 109.46562 * 254.99433 * 3 2 1 29 29 H 1.08998 * 109.47221 * 59.99793 * 5 4 3 30 30 H 1.08996 * 109.46680 * 299.99946 * 5 4 3 31 31 H 1.08998 * 109.47498 * 59.99725 * 6 5 4 32 32 H 1.09004 * 109.46843 * 299.99359 * 6 5 4 33 33 H 1.08998 * 109.47350 * 59.99522 * 7 6 5 34 34 H 1.09003 * 109.47457 * 299.99533 * 7 6 5 35 35 H 1.09002 * 109.58861 * 113.81616 * 11 10 8 36 36 H 1.08996 * 109.58519 * 353.53507 * 11 10 8 37 37 H 1.09003 * 109.49975 * 65.24379 * 12 11 10 38 38 H 1.09000 * 109.49553 * 185.30642 * 12 11 10 39 39 H 1.09004 * 109.45942 * 301.34050 * 13 12 11 40 40 H 0.97003 * 119.99843 * 180.02562 * 17 16 14 41 41 H 1.09002 * 109.49557 * 58.58503 * 22 13 12 42 42 H 1.08996 * 109.50003 * 178.68400 * 22 13 12 43 43 H 1.08996 * 109.53610 * 6.53712 * 23 10 8 44 44 H 1.09002 * 109.68003 * 246.23180 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 8 3.1266 1.2414 0.9527 5 6 3.9083 2.4350 1.0321 6 6 5.0111 2.2539 2.0770 7 6 5.8476 3.5321 2.1624 8 6 6.9335 3.3540 3.1921 9 8 7.0292 2.3075 3.7976 10 7 7.7989 4.3571 3.4393 11 6 8.8631 4.1982 4.4398 12 6 8.7801 5.3553 5.4403 13 6 8.8271 6.6840 4.6825 14 6 8.7797 7.8249 5.6661 15 1 8.7213 7.6226 6.7253 16 6 8.8107 9.1269 5.2136 17 7 8.7688 10.1225 6.0719 18 14 8.9124 9.4768 3.3814 19 1 7.5413 9.5764 2.8197 20 1 9.6317 10.7572 3.1611 21 1 9.6449 8.3751 2.7069 22 6 7.6277 6.7766 3.7365 23 6 7.6980 5.6354 2.7163 24 1 -0.5401 0.9354 -0.0004 25 1 -0.5401 -0.9353 0.0004 26 1 1.8500 -0.9352 0.0004 27 1 1.3854 2.1162 0.2659 28 1 2.4755 1.4867 -0.9927 29 1 3.2688 3.2697 1.3191 30 1 4.3586 2.6396 0.0608 31 1 5.6505 1.4193 1.7895 32 1 4.5611 2.0491 3.0484 33 1 5.2080 4.3664 2.4501 34 1 6.2977 3.7374 1.1911 35 1 9.8345 4.2117 3.9453 36 1 8.7332 3.2516 4.9642 37 1 7.8461 5.2876 5.9982 38 1 9.6214 5.2999 6.1311 39 1 9.7501 6.7404 4.1053 40 1 8.7903 11.0386 5.7535 41 1 6.7046 6.6954 4.3104 42 1 7.6492 7.7331 3.2143 43 1 6.7968 5.6372 2.1032 44 1 8.5731 5.7673 2.0799 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000542907826.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:55 Heat of formation + Delta-G solvation = -73.422685 kcal Electronic energy + Delta-G solvation = -21854.921081 eV Core-core repulsion = 18579.495936 eV Total energy + Delta-G solvation = -3275.425145 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.94013 -38.43847 -37.15789 -34.67907 -33.60071 -33.22234 -31.52911 -30.64473 -27.85534 -26.44690 -25.52501 -23.05505 -22.66723 -21.81438 -20.27585 -19.84580 -18.48364 -17.16415 -16.89567 -16.67172 -16.60716 -15.72118 -15.47943 -15.17661 -14.68676 -14.32670 -13.81063 -13.56589 -13.43013 -13.14207 -12.86287 -12.70386 -12.58524 -12.31456 -12.16838 -12.06337 -11.72079 -11.42471 -11.20572 -11.06059 -11.05326 -10.75485 -10.22551 -10.19808 -10.14824 -9.79638 -9.65274 -9.55051 -9.34159 -9.12188 -8.60827 -8.21734 -6.12981 -4.12431 1.77593 2.83003 3.14131 3.17779 3.27997 3.32560 3.58291 4.33026 4.51621 4.64841 4.73484 4.79901 4.97133 5.01944 5.07178 5.12867 5.17903 5.23848 5.26449 5.32391 5.47758 5.51606 5.58884 5.62465 5.80301 5.83787 5.96808 5.98958 6.13199 6.17220 6.17653 6.27095 6.27308 6.58683 6.61150 6.72918 6.87110 6.93980 7.14808 7.44153 7.67589 7.72056 8.39467 8.46669 8.91606 9.48653 11.00412 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.026005 B = 0.002988 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.450492 B = 9368.532235 C = 9993.185930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.151 4.151 3 C 0.087 3.913 4 O -0.384 6.384 5 C 0.062 3.938 6 C -0.102 4.102 7 C -0.138 4.138 8 C 0.514 3.486 9 O -0.552 6.552 10 N -0.603 5.603 11 C 0.108 3.892 12 C -0.113 4.113 13 C 0.014 3.986 14 C -0.513 4.513 15 H 0.074 0.926 16 C 0.067 3.933 17 N -0.900 5.900 18 Si 0.887 3.113 19 H -0.278 1.278 20 H -0.297 1.297 21 H -0.265 1.265 22 C -0.136 4.136 23 C 0.102 3.898 24 H 0.098 0.902 25 H 0.104 0.896 26 H 0.117 0.883 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.061 0.939 36 H 0.083 0.917 37 H 0.058 0.942 38 H 0.068 0.932 39 H 0.028 0.972 40 H 0.264 0.736 41 H 0.066 0.934 42 H 0.058 0.942 43 H 0.074 0.926 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.819 -14.249 -14.448 22.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.169 4.169 3 C 0.011 3.989 4 O -0.303 6.303 5 C -0.014 4.014 6 C -0.140 4.140 7 C -0.178 4.178 8 C 0.302 3.698 9 O -0.430 6.430 10 N -0.336 5.336 11 C -0.014 4.014 12 C -0.151 4.151 13 C -0.005 4.005 14 C -0.551 4.551 15 H 0.092 0.908 16 C -0.134 4.134 17 N -0.538 5.538 18 Si 0.717 3.283 19 H -0.206 1.206 20 H -0.225 1.225 21 H -0.190 1.190 22 C -0.174 4.174 23 C -0.021 4.021 24 H 0.116 0.884 25 H 0.122 0.878 26 H 0.135 0.865 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.114 0.886 34 H 0.111 0.889 35 H 0.079 0.921 36 H 0.101 0.899 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.046 0.954 40 H 0.074 0.926 41 H 0.084 0.916 42 H 0.076 0.924 43 H 0.092 0.908 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.713 -14.754 -13.985 22.979 hybrid contribution -0.058 0.876 -1.185 1.475 sum -10.772 -13.878 -15.169 23.211 Atomic orbital electron populations 1.23847 0.95573 1.02297 1.00180 1.22767 0.95662 0.98295 1.00145 1.21535 0.89035 0.95831 0.92502 1.87919 1.44559 1.37413 1.60421 1.22547 0.92886 0.87087 0.98916 1.21207 0.95709 0.97360 0.99687 1.21571 0.96933 0.99902 0.99403 1.20455 0.82334 0.83322 0.83675 1.90667 1.73387 1.27339 1.51641 1.48224 1.31195 1.14126 1.40047 1.21759 0.89028 1.00454 0.90178 1.21822 1.01968 0.94193 0.97134 1.19132 0.93102 0.93807 0.94419 1.21052 1.50664 0.89062 0.94319 0.90833 1.25062 0.94565 0.96299 0.97507 1.69902 1.50638 0.99133 1.34159 0.86857 0.77823 0.77245 0.86376 1.20561 1.22463 1.18982 1.22389 1.02428 0.95305 0.97287 1.21985 1.01459 0.83664 0.94994 0.88412 0.87784 0.86548 0.92774 0.92386 0.93103 0.93226 0.90368 0.90244 0.88630 0.88930 0.92078 0.89852 0.92308 0.91327 0.95388 0.92646 0.91572 0.92368 0.90753 0.91692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.20 14.31 29.02 0.42 -0.78 16 2 C -0.15 -1.20 9.89 -36.02 -0.36 -1.56 16 3 C 0.09 0.74 6.35 36.01 0.23 0.97 16 4 O -0.38 -4.31 10.33 -35.23 -0.36 -4.68 16 5 C 0.06 0.60 5.94 37.16 0.22 0.82 16 6 C -0.10 -1.17 4.87 -26.73 -0.13 -1.30 16 7 C -0.14 -1.57 4.05 -27.88 -0.11 -1.68 16 8 C 0.51 8.08 7.70 -10.99 -0.08 8.00 16 9 O -0.55 -10.42 15.39 5.55 0.09 -10.34 16 10 N -0.60 -9.76 2.98 -172.52 -0.51 -10.28 16 11 C 0.11 1.82 6.42 -3.71 -0.02 1.80 16 12 C -0.11 -2.18 5.30 -26.61 -0.14 -2.32 16 13 C 0.01 0.31 1.66 -91.73 -0.15 0.16 16 14 C -0.51 -13.85 9.14 -34.44 -0.31 -14.17 16 15 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 16 C 0.07 1.87 5.45 -17.82 -0.10 1.77 16 17 N -0.90 -26.92 13.96 55.43 0.77 -26.15 16 18 Si 0.89 20.71 24.38 -169.99 -4.14 16.57 16 19 H -0.28 -6.23 6.86 56.52 0.39 -5.84 16 20 H -0.30 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.26 -5.80 6.53 56.52 0.37 -5.43 16 22 C -0.14 -2.65 4.85 -26.59 -0.13 -2.78 16 23 C 0.10 1.56 6.35 -3.54 -0.02 1.53 16 24 H 0.10 0.56 7.90 -52.48 -0.41 0.15 16 25 H 0.10 0.55 8.06 -52.48 -0.42 0.13 16 26 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 27 H 0.05 0.41 7.86 -51.93 -0.41 0.00 16 28 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 32 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 33 H 0.10 0.97 7.70 -51.93 -0.40 0.57 16 34 H 0.09 0.85 7.95 -51.93 -0.41 0.44 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.08 1.42 7.00 -51.93 -0.36 1.06 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.03 0.63 7.20 -51.93 -0.37 0.25 16 40 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.06 1.19 3.24 -51.93 -0.17 1.03 16 43 H 0.07 0.90 5.97 -51.93 -0.31 0.59 16 44 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 348.40 15.07 5.25 5.25 Total: -1.00 -31.68 348.40 -7.14 -38.82 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -7.52 Total: 0.35 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: -0.70 Total: -9.55 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: 0.26 Total: -36.43 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: -0.28 Total: -15.01 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.14 Total: 16.57 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.68 -7.14 -38.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542907826.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.604 kcal (2) G-P(sol) polarization free energy of solvation -31.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds