Wall clock time and date at job start Tue Mar 31 2020 05:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47148 * 2 1 4 4 C 1.53006 * 109.47086 * 239.99802 * 2 1 3 5 5 C 1.53000 * 109.47092 * 120.00078 * 2 1 3 6 6 N 1.46496 * 109.47428 * 64.14717 * 5 2 1 7 7 C 1.46506 * 120.00230 * 273.53465 * 6 5 2 8 8 C 1.50700 * 109.47104 * 264.19333 * 7 6 5 9 9 H 1.08003 * 119.99652 * 355.17567 * 8 7 6 10 10 C 1.37872 * 120.00161 * 175.44472 * 8 7 6 11 11 N 1.31514 * 119.99672 * 359.72493 * 10 8 7 12 12 Si 1.86801 * 120.00157 * 179.72619 * 10 8 7 13 13 H 1.48499 * 109.47230 * 90.00261 * 12 10 8 14 14 H 1.48503 * 109.47154 * 210.00212 * 12 10 8 15 15 H 1.48499 * 109.46939 * 330.00042 * 12 10 8 16 16 C 1.34778 * 120.00344 * 93.52660 * 6 5 2 17 17 O 1.21273 * 120.00286 * 185.22788 * 16 6 5 18 18 C 1.50700 * 119.99494 * 5.23376 * 16 6 5 19 19 H 1.08998 * 110.50874 * 336.54075 * 18 16 6 20 20 C 1.54991 * 110.56992 * 213.78676 * 18 16 6 21 21 C 1.54890 * 102.33360 * 204.34921 * 20 18 16 22 22 C 1.51843 * 104.43165 * 37.62378 * 21 20 18 23 23 O 1.20766 * 126.33658 * 156.22959 * 22 21 20 24 24 C 1.51445 * 107.32143 * 336.21020 * 22 21 20 25 25 H 1.08996 * 109.47116 * 289.39598 * 1 2 3 26 26 H 1.09000 * 109.47123 * 49.39159 * 1 2 3 27 27 H 1.08998 * 109.47179 * 169.39469 * 1 2 3 28 28 H 1.09002 * 109.47209 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47065 * 299.99514 * 3 2 1 30 30 H 1.09000 * 109.47532 * 60.00495 * 3 2 1 31 31 H 1.08999 * 109.47016 * 300.20625 * 4 2 1 32 32 H 1.08997 * 109.46602 * 60.20570 * 4 2 1 33 33 H 1.08994 * 109.46852 * 180.20511 * 4 2 1 34 34 H 1.09001 * 109.46897 * 304.14886 * 5 2 1 35 35 H 1.09000 * 109.47513 * 184.14765 * 5 2 1 36 36 H 1.08999 * 109.47544 * 144.19191 * 7 6 5 37 37 H 1.09008 * 109.46834 * 24.19253 * 7 6 5 38 38 H 0.97004 * 119.99795 * 179.97438 * 11 10 8 39 39 H 1.09001 * 110.82799 * 322.56257 * 20 18 16 40 40 H 1.09000 * 110.82845 * 86.13410 * 20 18 16 41 41 H 1.09001 * 110.43934 * 156.36111 * 21 20 18 42 42 H 1.08997 * 110.44016 * 278.88511 * 21 20 18 43 43 H 1.09004 * 109.98340 * 241.01011 * 24 22 21 44 44 H 1.08998 * 109.98720 * 119.70651 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2492 6 7 1.6350 -2.1283 1.2004 7 6 0.3227 -2.5311 1.7124 8 6 0.4640 -3.0122 3.1335 9 1 1.4434 -3.0912 3.5819 10 6 -0.6564 -3.3568 3.8593 11 7 -1.8489 -3.2604 3.3132 12 14 -0.4806 -3.9605 5.6183 13 1 -0.5395 -2.8033 6.5470 14 1 -1.5850 -4.9028 5.9309 15 1 0.8223 -4.6554 5.7752 16 6 2.4695 -3.0523 0.6843 17 8 2.0990 -4.2000 0.5564 18 6 3.8630 -2.6593 0.2663 19 1 3.9103 -1.5918 0.0512 20 6 4.3147 -3.4836 -0.9660 21 6 5.8584 -3.4364 -0.8478 22 6 6.1268 -3.5316 0.6437 23 8 7.1430 -3.9250 1.1642 24 6 4.8844 -3.0415 1.3576 25 1 -0.3633 0.3413 0.9693 26 1 -0.3633 0.6689 -0.7802 27 1 -0.3633 -1.0101 -0.1891 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.6737 -1.7479 -1.2511 32 1 1.6797 -0.2053 -2.1392 33 1 3.1300 -0.7245 -1.2474 34 1 1.6172 -0.2521 2.1376 35 1 3.1275 -0.6574 1.2872 36 1 -0.0772 -3.3351 1.0946 37 1 -0.3560 -1.6785 1.6832 38 1 -2.6372 -3.5032 3.8237 39 1 3.9520 -4.5094 -0.9003 40 1 3.9821 -3.0122 -1.8908 41 1 6.3062 -4.2820 -1.3699 42 1 6.2420 -2.4964 -1.2444 43 1 5.1238 -2.1691 1.9657 44 1 4.4787 -3.8341 1.9863 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567944730.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:54 Heat of formation + Delta-G solvation = -91.769831 kcal Electronic energy + Delta-G solvation = -23731.781759 eV Core-core repulsion = 20455.561022 eV Total energy + Delta-G solvation = -3276.220737 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.33071 -39.04075 -37.14496 -35.65822 -33.86359 -32.39751 -29.56482 -28.19892 -27.30693 -26.90653 -26.57117 -25.43423 -23.20405 -21.12076 -19.51689 -19.24251 -17.93624 -17.04289 -16.54006 -16.03344 -15.50097 -15.22285 -14.78938 -14.61465 -14.29522 -13.90865 -13.63755 -13.52646 -13.35064 -12.94856 -12.62479 -12.36360 -12.21458 -12.07605 -11.66772 -11.56446 -11.41781 -11.31103 -11.27833 -11.13452 -10.94984 -10.84656 -10.84054 -10.55262 -10.45411 -10.15772 -10.13941 -9.61172 -9.55555 -8.85972 -8.43506 -7.63592 -6.05805 -4.09770 1.89608 3.27548 3.28949 3.36175 3.41255 3.84070 4.14900 4.43039 4.47314 4.76900 4.86489 4.95221 5.00446 5.14583 5.22808 5.27607 5.28998 5.35088 5.40831 5.57968 5.64034 5.67347 5.71921 5.80206 5.81259 5.88849 5.93649 6.07289 6.08125 6.15784 6.21466 6.21966 6.32398 6.38548 6.54919 6.70552 7.08795 7.43154 7.43896 7.54165 7.91514 8.22844 8.41857 8.88454 9.07560 9.55278 11.01999 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.012945 B = 0.006710 C = 0.004994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.525043 B = 4171.935051 C = 5605.603097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.088 4.088 3 C -0.137 4.137 4 C -0.145 4.145 5 C 0.118 3.882 6 N -0.590 5.590 7 C 0.243 3.757 8 C -0.525 4.525 9 H 0.056 0.944 10 C 0.062 3.938 11 N -0.895 5.895 12 Si 0.895 3.105 13 H -0.281 1.281 14 H -0.285 1.285 15 H -0.274 1.274 16 C 0.517 3.483 17 O -0.539 6.539 18 C -0.122 4.122 19 H 0.104 0.896 20 C -0.105 4.105 21 C -0.181 4.181 22 C 0.375 3.625 23 O -0.452 6.452 24 C -0.171 4.171 25 H 0.059 0.941 26 H 0.045 0.955 27 H 0.065 0.935 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.035 0.965 37 H 0.045 0.955 38 H 0.263 0.737 39 H 0.091 0.909 40 H 0.080 0.920 41 H 0.093 0.907 42 H 0.103 0.897 43 H 0.102 0.898 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.387 8.768 -9.601 16.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.089 4.089 3 C -0.195 4.195 4 C -0.202 4.202 5 C -0.007 4.007 6 N -0.321 5.321 7 C 0.124 3.876 8 C -0.564 4.564 9 H 0.074 0.926 10 C -0.140 4.140 11 N -0.534 5.534 12 Si 0.723 3.277 13 H -0.207 1.207 14 H -0.211 1.211 15 H -0.199 1.199 16 C 0.303 3.697 17 O -0.417 6.417 18 C -0.144 4.144 19 H 0.122 0.878 20 C -0.143 4.143 21 C -0.219 4.219 22 C 0.251 3.749 23 O -0.325 6.325 24 C -0.209 4.209 25 H 0.078 0.922 26 H 0.064 0.936 27 H 0.084 0.916 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.053 0.947 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.110 0.890 40 H 0.099 0.901 41 H 0.111 0.889 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 10.490 7.910 -9.330 16.113 hybrid contribution -0.178 -0.166 1.087 1.114 sum 10.312 7.744 -8.242 15.305 Atomic orbital electron populations 1.21941 0.93830 1.02432 1.01468 1.21006 0.96944 0.95029 0.95951 1.21811 1.00487 0.95394 1.01808 1.22036 1.00223 1.01081 0.96876 1.21604 0.98938 0.82703 0.97438 1.48172 1.19157 1.05774 1.58949 1.19397 0.77772 0.96624 0.93792 1.21454 0.93035 1.44219 0.97656 0.92618 1.24904 0.95131 0.95556 0.98432 1.69923 0.97755 1.48605 1.37135 0.86543 0.77878 0.78690 0.84611 1.20673 1.21109 1.19918 1.19955 0.85960 0.85682 0.78120 1.90665 1.76586 1.19347 1.55102 1.22344 0.93635 1.02120 0.96264 0.87820 1.22420 0.92524 1.02294 0.97037 1.22919 0.98410 1.04445 0.96131 1.24955 0.86419 0.71147 0.92404 1.90411 1.30168 1.36403 1.75560 1.22548 0.94875 1.04143 0.99339 0.92235 0.93610 0.91616 0.92922 0.92730 0.92477 0.92078 0.92979 0.92768 0.90104 0.91454 0.94655 0.93662 0.92761 0.89042 0.90147 0.88883 0.87846 0.87984 0.87414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 7.07 37.16 0.26 -1.77 16 2 C -0.09 -1.11 0.85 -154.51 -0.13 -1.24 16 3 C -0.14 -1.37 8.45 37.16 0.31 -1.05 16 4 C -0.15 -1.72 7.06 37.16 0.26 -1.46 16 5 C 0.12 1.75 4.43 -4.04 -0.02 1.73 16 6 N -0.59 -11.45 2.00 -175.06 -0.35 -11.80 16 7 C 0.24 6.01 4.13 -5.19 -0.02 5.99 16 8 C -0.52 -14.48 9.34 -34.44 -0.32 -14.80 16 9 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 10 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 11 N -0.90 -26.01 13.29 55.43 0.74 -25.28 16 12 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 14 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 15 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 16 C 0.52 9.83 4.94 -10.98 -0.05 9.78 16 17 O -0.54 -12.79 15.65 5.56 0.09 -12.70 16 18 C -0.12 -1.64 1.81 -90.05 -0.16 -1.80 16 19 H 0.10 1.14 3.80 -51.93 -0.20 0.94 16 20 C -0.10 -1.23 6.29 -24.68 -0.16 -1.38 16 21 C -0.18 -1.79 6.72 -26.32 -0.18 -1.97 16 22 C 0.38 4.89 7.88 -28.10 -0.22 4.67 16 23 O -0.45 -7.30 17.99 5.99 0.11 -7.19 16 24 C -0.17 -2.29 6.26 -26.85 -0.17 -2.46 16 25 H 0.06 0.92 7.74 -51.93 -0.40 0.52 16 26 H 0.04 0.57 8.11 -51.93 -0.42 0.15 16 27 H 0.06 1.13 6.64 -51.93 -0.34 0.79 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.88 6.46 -51.93 -0.34 0.55 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.05 0.54 6.14 -51.93 -0.32 0.22 16 34 H 0.08 1.29 8.08 -51.93 -0.42 0.87 16 35 H 0.07 0.83 5.96 -51.93 -0.31 0.52 16 36 H 0.04 1.00 7.53 -51.93 -0.39 0.61 16 37 H 0.05 1.12 5.80 -51.92 -0.30 0.82 16 38 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 39 H 0.09 1.28 7.30 -51.93 -0.38 0.90 16 40 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.11 1.72 7.82 -51.93 -0.41 1.32 16 LS Contribution 343.11 15.07 5.17 5.17 Total: -1.00 -32.56 343.11 -7.11 -39.67 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -7.15 Total: -0.43 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -0.69 Total: -4.14 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.39 Total: -37.08 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: 0.19 Total: -19.89 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.56 -7.11 -39.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567944730.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.101 kcal (2) G-P(sol) polarization free energy of solvation -32.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds