Wall clock time and date at job start Tue Mar 31 2020 05:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47148 * 2 1 4 4 C 1.53006 * 109.47086 * 239.99802 * 2 1 3 5 5 C 1.53000 * 109.47092 * 120.00078 * 2 1 3 6 6 N 1.46496 * 109.47428 * 64.14717 * 5 2 1 7 7 C 1.46506 * 120.00230 * 273.53465 * 6 5 2 8 8 C 1.50700 * 109.47104 * 264.19333 * 7 6 5 9 9 H 1.08003 * 119.99652 * 355.17567 * 8 7 6 10 10 C 1.37872 * 120.00161 * 175.44472 * 8 7 6 11 11 N 1.31514 * 119.99672 * 359.72493 * 10 8 7 12 12 Si 1.86801 * 120.00157 * 179.72619 * 10 8 7 13 13 H 1.48499 * 109.47230 * 90.00261 * 12 10 8 14 14 H 1.48503 * 109.47154 * 210.00212 * 12 10 8 15 15 H 1.48499 * 109.46939 * 330.00042 * 12 10 8 16 16 C 1.34778 * 120.00344 * 93.52660 * 6 5 2 17 17 O 1.21273 * 120.00286 * 185.22788 * 16 6 5 18 18 C 1.50700 * 119.99494 * 5.23376 * 16 6 5 19 19 H 1.08998 * 110.50874 * 336.54075 * 18 16 6 20 20 C 1.54991 * 110.56992 * 213.78676 * 18 16 6 21 21 C 1.54890 * 102.33360 * 204.34921 * 20 18 16 22 22 C 1.51843 * 104.43165 * 37.62378 * 21 20 18 23 23 O 1.20766 * 126.33658 * 156.22959 * 22 21 20 24 24 C 1.51445 * 107.32143 * 336.21020 * 22 21 20 25 25 H 1.08996 * 109.47116 * 289.39598 * 1 2 3 26 26 H 1.09000 * 109.47123 * 49.39159 * 1 2 3 27 27 H 1.08998 * 109.47179 * 169.39469 * 1 2 3 28 28 H 1.09002 * 109.47209 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47065 * 299.99514 * 3 2 1 30 30 H 1.09000 * 109.47532 * 60.00495 * 3 2 1 31 31 H 1.08999 * 109.47016 * 300.20625 * 4 2 1 32 32 H 1.08997 * 109.46602 * 60.20570 * 4 2 1 33 33 H 1.08994 * 109.46852 * 180.20511 * 4 2 1 34 34 H 1.09001 * 109.46897 * 304.14886 * 5 2 1 35 35 H 1.09000 * 109.47513 * 184.14765 * 5 2 1 36 36 H 1.08999 * 109.47544 * 144.19191 * 7 6 5 37 37 H 1.09008 * 109.46834 * 24.19253 * 7 6 5 38 38 H 0.97004 * 119.99795 * 179.97438 * 11 10 8 39 39 H 1.09001 * 110.82799 * 322.56257 * 20 18 16 40 40 H 1.09000 * 110.82845 * 86.13410 * 20 18 16 41 41 H 1.09001 * 110.43934 * 156.36111 * 21 20 18 42 42 H 1.08997 * 110.44016 * 278.88511 * 21 20 18 43 43 H 1.09004 * 109.98340 * 241.01011 * 24 22 21 44 44 H 1.08998 * 109.98720 * 119.70651 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2492 6 7 1.6350 -2.1283 1.2004 7 6 0.3227 -2.5311 1.7124 8 6 0.4640 -3.0122 3.1335 9 1 1.4434 -3.0912 3.5819 10 6 -0.6564 -3.3568 3.8593 11 7 -1.8489 -3.2604 3.3132 12 14 -0.4806 -3.9605 5.6183 13 1 -0.5395 -2.8033 6.5470 14 1 -1.5850 -4.9028 5.9309 15 1 0.8223 -4.6554 5.7752 16 6 2.4695 -3.0523 0.6843 17 8 2.0990 -4.2000 0.5564 18 6 3.8630 -2.6593 0.2663 19 1 3.9103 -1.5918 0.0512 20 6 4.3147 -3.4836 -0.9660 21 6 5.8584 -3.4364 -0.8478 22 6 6.1268 -3.5316 0.6437 23 8 7.1430 -3.9250 1.1642 24 6 4.8844 -3.0415 1.3576 25 1 -0.3633 0.3413 0.9693 26 1 -0.3633 0.6689 -0.7802 27 1 -0.3633 -1.0101 -0.1891 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.6737 -1.7479 -1.2511 32 1 1.6797 -0.2053 -2.1392 33 1 3.1300 -0.7245 -1.2474 34 1 1.6172 -0.2521 2.1376 35 1 3.1275 -0.6574 1.2872 36 1 -0.0772 -3.3351 1.0946 37 1 -0.3560 -1.6785 1.6832 38 1 -2.6372 -3.5032 3.8237 39 1 3.9520 -4.5094 -0.9003 40 1 3.9821 -3.0122 -1.8908 41 1 6.3062 -4.2820 -1.3699 42 1 6.2420 -2.4964 -1.2444 43 1 5.1238 -2.1691 1.9657 44 1 4.4787 -3.8341 1.9863 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567944730.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:54 Heat of formation + Delta-G solvation = -111.849318 kcal Electronic energy + Delta-G solvation = -23732.652471 eV Core-core repulsion = 20455.561022 eV Total energy + Delta-G solvation = -3277.091449 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.61801 -40.26050 -38.42251 -36.87229 -35.58132 -34.30095 -30.82621 -29.58901 -28.52224 -28.03995 -27.61791 -26.84854 -24.97890 -22.43581 -20.60381 -20.39741 -19.23391 -18.62764 -18.31869 -17.27343 -16.88307 -16.60622 -16.34977 -15.80905 -15.64590 -15.14453 -14.82962 -14.75546 -14.48123 -14.30678 -14.15937 -13.86347 -13.53782 -13.13599 -13.01043 -12.94970 -12.67660 -12.60431 -12.49284 -12.46843 -12.34927 -12.23375 -12.13977 -11.96859 -11.77629 -11.65403 -11.49921 -11.26400 -10.70196 -10.61767 -10.37268 -9.31774 -8.22130 -6.35865 0.87662 1.33414 1.36161 1.45965 1.80979 2.30802 2.45369 3.07093 3.12820 3.45641 3.68740 3.77400 3.87997 3.95467 4.17691 4.21012 4.28443 4.32184 4.41175 4.53598 4.64961 4.71849 4.79903 4.83174 4.86590 4.97249 4.97704 5.02260 5.09933 5.12992 5.16650 5.18713 5.25665 5.28610 5.31683 5.43103 5.51696 5.57759 5.64280 5.91290 6.10618 6.42688 6.72262 6.87018 7.29484 7.54406 8.83957 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.012945 B = 0.006710 C = 0.004994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.525043 B = 4171.935051 C = 5605.603097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.083 4.083 3 C -0.130 4.130 4 C -0.143 4.143 5 C 0.110 3.890 6 N -0.593 5.593 7 C 0.263 3.737 8 C -0.541 4.541 9 H 0.048 0.952 10 C 0.011 3.989 11 N -0.926 5.926 12 Si 0.960 3.040 13 H -0.263 1.263 14 H -0.281 1.281 15 H -0.277 1.277 16 C 0.509 3.491 17 O -0.599 6.599 18 C -0.107 4.107 19 H 0.140 0.860 20 C -0.104 4.104 21 C -0.163 4.163 22 C 0.379 3.621 23 O -0.487 6.487 24 C -0.174 4.174 25 H 0.041 0.959 26 H 0.067 0.933 27 H 0.026 0.974 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.026 0.974 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.105 0.895 36 H -0.015 1.015 37 H 0.039 0.961 38 H 0.266 0.734 39 H 0.059 0.941 40 H 0.108 0.892 41 H 0.105 0.895 42 H 0.146 0.854 43 H 0.125 0.875 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.940 11.202 -10.501 20.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.084 4.084 3 C -0.188 4.188 4 C -0.200 4.200 5 C -0.013 4.013 6 N -0.322 5.322 7 C 0.142 3.858 8 C -0.580 4.580 9 H 0.066 0.934 10 C -0.188 4.188 11 N -0.566 5.566 12 Si 0.785 3.215 13 H -0.188 1.188 14 H -0.206 1.206 15 H -0.202 1.202 16 C 0.298 3.702 17 O -0.480 6.480 18 C -0.128 4.128 19 H 0.158 0.842 20 C -0.141 4.141 21 C -0.200 4.200 22 C 0.258 3.742 23 O -0.363 6.363 24 C -0.212 4.212 25 H 0.060 0.940 26 H 0.086 0.914 27 H 0.045 0.955 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.045 0.955 32 H 0.087 0.913 33 H 0.103 0.897 34 H 0.085 0.915 35 H 0.123 0.877 36 H 0.003 0.997 37 H 0.057 0.943 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.126 0.874 41 H 0.124 0.876 42 H 0.164 0.836 43 H 0.143 0.857 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 13.055 10.395 -10.240 19.579 hybrid contribution -1.054 -0.934 1.351 1.952 sum 12.001 9.461 -8.889 17.679 Atomic orbital electron populations 1.21907 0.96021 1.00395 1.01172 1.20994 0.95126 0.97133 0.95189 1.21764 1.02064 0.92547 1.02433 1.22021 1.02041 0.99009 0.96889 1.21958 1.01115 0.79858 0.98362 1.48124 1.17383 1.08169 1.58508 1.18780 0.80592 0.94599 0.91840 1.21755 0.92765 1.44485 0.98996 0.93389 1.25758 0.94817 0.95590 1.02681 1.70038 0.98455 1.49331 1.38774 0.85533 0.77554 0.78615 0.79832 1.18790 1.20634 1.20188 1.20978 0.87793 0.84633 0.76749 1.90632 1.78096 1.21928 1.57376 1.22334 0.89127 1.04351 0.96998 0.84199 1.22437 0.94006 1.00477 0.97223 1.22898 0.96534 1.07160 0.93414 1.25218 0.85257 0.69725 0.94045 1.90410 1.31322 1.38004 1.76526 1.22589 0.95184 1.04120 0.99355 0.94001 0.91374 0.95494 0.90332 0.91375 0.92716 0.95469 0.91301 0.89712 0.91489 0.87730 0.99688 0.94303 0.92492 0.92201 0.87398 0.87621 0.83649 0.85679 0.90908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.06 7.07 71.98 0.51 -3.55 16 2 C -0.08 -1.93 0.85 -52.18 -0.04 -1.98 16 3 C -0.13 -2.04 8.45 71.98 0.61 -1.43 16 4 C -0.14 -2.95 7.06 71.98 0.51 -2.44 16 5 C 0.11 3.12 4.43 86.38 0.38 3.51 16 6 N -0.59 -23.72 2.00 -826.14 -1.65 -25.37 16 7 C 0.26 13.90 4.13 85.63 0.35 14.25 16 8 C -0.54 -31.24 9.34 25.60 0.24 -31.00 16 9 H 0.05 2.77 7.81 -2.91 -0.02 2.75 16 10 C 0.01 0.61 5.46 84.65 0.46 1.07 16 11 N -0.93 -55.88 13.29 21.45 0.28 -55.60 16 12 Si 0.96 45.45 29.54 68.60 2.03 47.48 16 13 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 14 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 15 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 16 C 0.51 19.88 4.94 87.66 0.43 20.32 16 17 O -0.60 -30.24 15.65 -3.01 -0.05 -30.29 16 18 C -0.11 -2.65 1.81 -10.42 -0.02 -2.67 16 19 H 0.14 2.40 3.80 -2.39 -0.01 2.39 16 20 C -0.10 -2.16 6.29 31.92 0.20 -1.96 16 21 C -0.16 -2.55 6.72 30.86 0.21 -2.35 16 22 C 0.38 9.03 7.88 29.70 0.23 9.27 16 23 O -0.49 -15.01 17.99 -1.47 -0.03 -15.03 16 24 C -0.17 -4.41 6.26 30.52 0.19 -4.22 16 25 H 0.04 1.34 7.74 -2.39 -0.02 1.32 16 26 H 0.07 1.65 8.11 -2.39 -0.02 1.63 16 27 H 0.03 0.97 6.64 -2.39 -0.02 0.96 16 28 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.03 0.75 6.46 -2.39 -0.02 0.73 16 32 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.08 1.21 6.14 -2.39 -0.01 1.19 16 34 H 0.07 2.11 8.08 -2.39 -0.02 2.09 16 35 H 0.10 2.18 5.96 -2.39 -0.01 2.17 16 36 H -0.01 -0.93 7.53 -2.39 -0.02 -0.95 16 37 H 0.04 2.07 5.80 -2.38 -0.01 2.06 16 38 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 39 H 0.06 1.67 7.30 -2.39 -0.02 1.65 16 40 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.15 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.13 2.54 8.14 -2.39 -0.02 2.52 16 44 H 0.07 2.40 7.82 -2.39 -0.02 2.39 16 Total: -1.00 -78.07 343.11 5.83 -72.24 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: 0.98 Total: 9.77 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: 4.27 Total: -3.20 kcal Atomic # 7 Polarization: -79.60 SS G_CDS: -1.36 Total: -80.97 kcal Atomic # 8 Polarization: -45.25 SS G_CDS: -0.07 Total: -45.32 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -78.07 5.83 -72.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567944730.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.613 kcal (2) G-P(sol) polarization free energy of solvation -78.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds