Wall clock time and date at job start Tue Mar 31 2020 06:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 110.33333 * 2 1 4 4 C 1.54481 * 110.36914 * 237.74830 * 2 1 3 5 5 C 1.54502 * 104.06310 * 217.18901 * 4 2 1 6 6 H 1.09000 * 110.51501 * 241.35917 * 5 4 2 7 7 C 1.53005 * 110.51068 * 118.78551 * 5 4 2 8 8 C 1.54476 * 104.06523 * 0.02562 * 5 4 2 9 9 H 1.09007 * 110.37433 * 265.14623 * 8 5 4 10 10 C 1.50701 * 110.37665 * 142.92021 * 8 5 4 11 11 O 1.21281 * 119.99612 * 245.00375 * 10 8 5 12 12 N 1.34776 * 120.00244 * 64.99604 * 10 8 5 13 13 C 1.46926 * 120.62531 * 359.72457 * 12 10 8 14 14 C 1.53631 * 108.54159 * 126.36675 * 13 12 10 15 15 C 1.53040 * 109.23905 * 54.85390 * 14 13 12 16 16 C 1.50703 * 109.45908 * 178.49279 * 15 14 13 17 17 H 1.08003 * 120.00084 * 120.06865 * 16 15 14 18 18 C 1.37878 * 119.99794 * 300.06563 * 16 15 14 19 19 N 1.31514 * 119.99771 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00175 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47373 * 89.99460 * 20 18 16 22 22 H 1.48497 * 109.47222 * 210.00101 * 20 18 16 23 23 H 1.48505 * 109.47046 * 329.99480 * 20 18 16 24 24 C 1.53045 * 109.53972 * 298.51137 * 15 14 13 25 25 C 1.46926 * 120.63180 * 180.02562 * 12 10 8 26 26 O 1.44429 * 104.80479 * 23.97719 * 8 5 4 27 27 H 1.09001 * 109.46801 * 182.24978 * 1 2 3 28 28 H 1.09001 * 109.46998 * 302.24574 * 1 2 3 29 29 H 1.09000 * 109.47050 * 62.24865 * 1 2 3 30 30 H 1.08997 * 110.51285 * 335.84007 * 4 2 1 31 31 H 1.09001 * 110.50752 * 98.54670 * 4 2 1 32 32 H 1.08999 * 109.46939 * 61.45369 * 7 5 4 33 33 H 1.08998 * 109.47313 * 181.45769 * 7 5 4 34 34 H 1.08999 * 109.47222 * 301.45141 * 7 5 4 35 35 H 1.08998 * 109.58803 * 246.19375 * 13 12 10 36 36 H 1.08998 * 109.59068 * 6.62570 * 13 12 10 37 37 H 1.09004 * 109.63498 * 294.86336 * 14 13 12 38 38 H 1.09002 * 109.45915 * 174.73712 * 14 13 12 39 39 H 1.08995 * 109.46111 * 58.53215 * 15 14 13 40 40 H 0.97008 * 119.99674 * 180.02562 * 19 18 16 41 41 H 1.09006 * 109.49298 * 301.41128 * 24 15 14 42 42 H 1.09001 * 109.52564 * 181.33568 * 24 15 14 43 43 H 1.09000 * 109.58431 * 353.37641 * 25 12 10 44 44 H 1.09001 * 109.58148 * 113.79881 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9088 1.0221 0.0000 4 6 2.0678 -0.7728 -1.2248 5 6 3.3177 -1.5050 -0.6875 6 1 4.2109 -1.1761 -1.2187 7 6 3.1475 -3.0202 -0.8148 8 6 3.3871 -1.0885 0.7984 9 1 4.0521 -0.2338 0.9223 10 6 3.8553 -2.2434 1.6457 11 8 3.1112 -2.7320 2.4694 12 7 5.1009 -2.7334 1.4881 13 6 6.0117 -2.1560 0.4902 14 6 7.3244 -1.7730 1.1904 15 6 7.8841 -2.9979 1.9174 16 6 9.1910 -2.6373 2.5755 17 1 9.2999 -2.7290 3.6461 18 6 10.2477 -2.1906 1.8108 19 7 11.3881 -1.8755 2.3851 20 14 10.0592 -2.0315 -0.0408 21 1 9.5662 -0.6707 -0.3731 22 1 11.3743 -2.2546 -0.6933 23 1 9.0870 -3.0429 -0.5281 24 6 6.8874 -3.4605 2.9828 25 6 5.5716 -3.8593 2.3064 26 8 2.0324 -0.7256 1.1436 27 1 -0.3633 -1.0269 0.0403 28 1 -0.3633 0.5483 0.8692 29 1 -0.3633 0.4785 -0.9095 30 1 1.3275 -1.4903 -1.5788 31 1 2.3429 -0.0818 -2.0216 32 1 3.0323 -3.2859 -1.8656 33 1 4.0265 -3.5200 -0.4078 34 1 2.2624 -3.3341 -0.2615 35 1 6.2114 -2.8902 -0.2903 36 1 5.5573 -1.2677 0.0514 37 1 7.1365 -0.9767 1.9107 38 1 8.0451 -1.4296 0.4483 39 1 8.0485 -3.8021 1.2004 40 1 12.1314 -1.5608 1.8471 41 1 6.7037 -2.6483 3.6862 42 1 7.2966 -4.3184 3.5164 43 1 4.8267 -4.0952 3.0664 44 1 5.7362 -4.7293 1.6706 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568298499.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:29 Heat of formation + Delta-G solvation = -82.399292 kcal Electronic energy + Delta-G solvation = -23749.255591 eV Core-core repulsion = 20473.441191 eV Total energy + Delta-G solvation = -3275.814400 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.82930 -38.88879 -36.94891 -34.16116 -33.19194 -32.37298 -31.39922 -30.58767 -27.38757 -27.16537 -26.00444 -22.93448 -22.76496 -21.48590 -21.07367 -19.94726 -18.52810 -17.23625 -16.80322 -16.51521 -16.22016 -15.60862 -14.68297 -14.64248 -14.53076 -14.00402 -13.63629 -13.46903 -13.23453 -12.89283 -12.72331 -12.61981 -12.52156 -12.44232 -12.31457 -12.12719 -11.91205 -11.49278 -11.31273 -11.05302 -10.95762 -10.88013 -10.74177 -10.23206 -10.16238 -9.94940 -9.78731 -9.42364 -9.31569 -9.11496 -8.60815 -8.22006 -6.12942 -4.12346 2.76813 2.97226 3.16916 3.27389 3.32159 3.84122 4.23309 4.32943 4.38251 4.54494 4.71978 4.90334 4.99274 5.10178 5.11323 5.19078 5.26540 5.37663 5.40972 5.49548 5.56482 5.59134 5.61525 5.70802 5.75399 5.79673 5.81120 5.90583 5.92751 5.95243 6.12504 6.14976 6.26121 6.55369 6.60365 6.64974 6.73725 6.89049 7.14634 7.44122 7.64732 7.70337 8.38810 8.46783 8.91840 9.48732 11.00529 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.026625 B = 0.004870 C = 0.004506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.374968 B = 5748.089376 C = 6211.770850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.065 3.935 3 H 0.070 0.930 4 C -0.146 4.146 5 C -0.117 4.117 6 H 0.093 0.907 7 C -0.154 4.154 8 C 0.060 3.940 9 H 0.093 0.907 10 C 0.526 3.474 11 O -0.533 6.533 12 N -0.600 5.600 13 C 0.098 3.902 14 C -0.136 4.136 15 C 0.015 3.985 16 C -0.513 4.513 17 H 0.074 0.926 18 C 0.068 3.932 19 N -0.900 5.900 20 Si 0.886 3.114 21 H -0.279 1.279 22 H -0.297 1.297 23 H -0.265 1.265 24 C -0.113 4.113 25 C 0.110 3.890 26 O -0.340 6.340 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.058 0.942 39 H 0.028 0.972 40 H 0.264 0.736 41 H 0.059 0.941 42 H 0.069 0.931 43 H 0.084 0.916 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.558 2.370 -10.252 20.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.007 3.993 3 H 0.088 0.912 4 C -0.183 4.183 5 C -0.136 4.136 6 H 0.112 0.888 7 C -0.211 4.211 8 C -0.001 4.001 9 H 0.111 0.889 10 C 0.313 3.687 11 O -0.409 6.409 12 N -0.334 5.334 13 C -0.025 4.025 14 C -0.174 4.174 15 C -0.004 4.004 16 C -0.551 4.551 17 H 0.092 0.908 18 C -0.133 4.133 19 N -0.538 5.538 20 Si 0.716 3.284 21 H -0.206 1.206 22 H -0.224 1.224 23 H -0.190 1.190 24 C -0.151 4.151 25 C -0.011 4.011 26 O -0.259 6.259 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.046 0.954 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.102 0.898 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.896 2.114 -9.622 20.429 hybrid contribution 0.404 0.423 -1.269 1.398 sum -17.492 2.537 -10.892 20.761 Atomic orbital electron populations 1.21782 0.92990 1.03105 1.02313 1.23055 0.95602 0.95437 0.85182 0.91167 1.23120 0.97256 0.99700 0.98263 1.22563 0.99350 0.97640 0.94018 0.88844 1.21999 1.03299 0.93752 1.02096 1.22908 0.86717 0.96746 0.93727 0.88914 1.19926 0.81640 0.83827 0.83327 1.90677 1.54109 1.60302 1.35807 1.48064 1.12307 1.34591 1.38453 1.22149 0.91665 0.97850 0.90787 1.22481 0.93621 1.01690 0.99628 1.19125 0.94409 0.92791 0.94048 1.21055 0.94106 1.44104 0.95853 0.90815 1.25051 0.95150 0.94812 0.98326 1.69902 1.03111 1.44949 1.35876 0.86871 0.76649 0.78503 0.86380 1.20569 1.22447 1.18966 1.21839 0.93213 1.01269 0.98817 1.21786 0.97445 0.87331 0.94571 1.89280 1.25102 1.74029 1.37448 0.91664 0.91779 0.91165 0.90107 0.90238 0.92030 0.91271 0.91920 0.91473 0.90823 0.91518 0.92393 0.95355 0.92640 0.92238 0.91256 0.89770 0.91912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.52 37.16 0.35 -0.90 16 2 C 0.07 0.67 3.92 -25.95 -0.10 0.57 16 3 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 4 C -0.15 -1.30 6.28 -25.17 -0.16 -1.46 16 5 C -0.12 -1.26 2.63 -89.05 -0.23 -1.50 16 6 H 0.09 0.87 6.83 -51.93 -0.35 0.52 16 7 C -0.15 -1.76 7.95 37.16 0.30 -1.47 16 8 C 0.06 0.84 2.68 -27.11 -0.07 0.76 16 9 H 0.09 1.18 7.59 -51.93 -0.39 0.79 16 10 C 0.53 8.94 5.49 -10.99 -0.06 8.88 16 11 O -0.53 -10.94 15.97 -13.61 -0.22 -11.16 16 12 N -0.60 -9.82 2.13 -172.48 -0.37 -10.18 16 13 C 0.10 1.51 4.96 -3.48 -0.02 1.49 16 14 C -0.14 -2.66 4.86 -26.38 -0.13 -2.78 16 15 C 0.02 0.33 1.65 -91.73 -0.15 0.18 16 16 C -0.51 -13.82 9.14 -34.44 -0.31 -14.14 16 17 H 0.07 2.18 7.99 -52.48 -0.42 1.76 16 18 C 0.07 1.89 5.45 -17.82 -0.10 1.79 16 19 N -0.90 -26.91 13.96 55.43 0.77 -26.13 16 20 Si 0.89 20.64 24.38 -169.99 -4.14 16.49 16 21 H -0.28 -6.23 6.86 56.52 0.39 -5.84 16 22 H -0.30 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.26 -5.75 6.53 56.52 0.37 -5.39 16 24 C -0.11 -2.17 5.30 -26.59 -0.14 -2.32 16 25 C 0.11 1.86 6.43 -3.69 -0.02 1.83 16 26 O -0.34 -5.07 10.61 -54.39 -0.58 -5.65 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.69 7.46 -51.93 -0.39 0.30 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.88 5.54 -51.93 -0.29 0.59 16 34 H 0.06 0.81 8.09 -51.93 -0.42 0.39 16 35 H 0.07 0.98 7.96 -51.93 -0.41 0.56 16 36 H 0.07 0.94 4.45 -51.93 -0.23 0.71 16 37 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 38 H 0.06 1.19 3.24 -51.93 -0.17 1.02 16 39 H 0.03 0.63 7.20 -51.93 -0.37 0.25 16 40 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 43 H 0.08 1.44 7.01 -51.93 -0.36 1.08 16 44 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 326.89 15.07 4.93 4.93 Total: -1.00 -31.95 326.89 -7.68 -39.63 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -7.22 Total: 1.11 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: -0.85 Total: -9.04 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: 0.41 Total: -36.32 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -0.79 Total: -16.81 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.14 Total: 16.49 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.95 -7.68 -39.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568298499.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.768 kcal (2) G-P(sol) polarization free energy of solvation -31.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds