Wall clock time and date at job start Tue Mar 31 2020 06:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 110.41581 * 2 1 4 4 C 1.54477 * 110.37338 * 237.68989 * 2 1 3 5 5 C 1.54686 * 104.07799 * 217.09914 * 4 2 1 6 6 H 1.09004 * 110.49143 * 118.71933 * 5 4 2 7 7 C 1.52997 * 110.61288 * 241.48639 * 5 4 2 8 8 C 1.54484 * 103.97888 * 0.13703 * 5 4 2 9 9 H 1.08997 * 110.36738 * 264.96268 * 8 5 4 10 10 C 1.50694 * 110.37164 * 142.73734 * 8 5 4 11 11 O 1.21283 * 120.00164 * 266.85778 * 10 8 5 12 12 N 1.34776 * 119.99875 * 86.58359 * 10 8 5 13 13 C 1.46926 * 120.63542 * 354.42585 * 12 10 8 14 14 C 1.53626 * 108.54495 * 126.36405 * 13 12 10 15 15 C 1.53047 * 109.23677 * 54.86425 * 14 13 12 16 16 C 1.50697 * 109.45628 * 178.49012 * 15 14 13 17 17 H 1.08001 * 120.00323 * 120.06692 * 16 15 14 18 18 C 1.37876 * 119.99998 * 300.06456 * 16 15 14 19 19 N 1.31519 * 120.00346 * 0.02562 * 18 16 15 20 20 Si 1.86808 * 120.00171 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46778 * 90.00112 * 20 18 16 22 22 H 1.48494 * 109.47293 * 209.99913 * 20 18 16 23 23 H 1.48497 * 109.46691 * 330.00257 * 20 18 16 24 24 C 1.53036 * 109.53641 * 298.50650 * 15 14 13 25 25 C 1.46933 * 120.63171 * 174.70922 * 12 10 8 26 26 O 1.44423 * 104.90155 * 23.84797 * 8 5 4 27 27 H 1.08993 * 109.47351 * 299.14712 * 1 2 3 28 28 H 1.08995 * 109.47001 * 59.14611 * 1 2 3 29 29 H 1.09001 * 109.47009 * 179.14032 * 1 2 3 30 30 H 1.09000 * 110.50933 * 335.83216 * 4 2 1 31 31 H 1.09000 * 110.51249 * 98.54427 * 4 2 1 32 32 H 1.08997 * 109.46926 * 182.11361 * 7 5 4 33 33 H 1.09000 * 109.47184 * 302.11887 * 7 5 4 34 34 H 1.09003 * 109.46612 * 62.11583 * 7 5 4 35 35 H 1.08995 * 109.59194 * 246.20986 * 13 12 10 36 36 H 1.09005 * 109.58083 * 6.63037 * 13 12 10 37 37 H 1.08998 * 109.63781 * 294.87185 * 14 13 12 38 38 H 1.08999 * 109.43072 * 174.73083 * 14 13 12 39 39 H 1.08995 * 109.44906 * 58.52494 * 15 14 13 40 40 H 0.96999 * 120.00106 * 179.97438 * 19 18 16 41 41 H 1.09003 * 109.50022 * 301.41710 * 24 15 14 42 42 H 1.08997 * 109.52372 * 181.33639 * 24 15 14 43 43 H 1.09006 * 109.58522 * 353.36717 * 25 12 10 44 44 H 1.08992 * 109.59035 * 113.65227 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0678 -0.7740 -1.2239 5 6 3.3207 -1.5048 -0.6862 6 1 3.1998 -2.5845 -0.7742 7 6 4.5750 -1.0419 -1.4300 8 6 3.3873 -1.0871 0.7996 9 1 4.0528 -0.2329 0.9241 10 6 3.8529 -2.2417 1.6487 11 8 3.0415 -2.9786 2.1679 12 7 5.1712 -2.4587 1.8267 13 6 6.1665 -1.6554 1.1037 14 6 7.1423 -1.0515 2.1250 15 6 7.7397 -2.1741 2.9765 16 6 8.7258 -1.5910 3.9557 17 1 8.5709 -1.7159 5.0172 18 6 9.8257 -0.8981 3.4963 19 7 10.0142 -0.7456 2.2037 20 14 11.0484 -0.1759 4.7100 21 1 12.1085 -1.1751 4.9985 22 1 11.6632 1.0436 4.1270 23 1 10.3456 0.1777 5.9694 24 6 6.6220 -2.8863 3.7417 25 6 5.6403 -3.5073 2.7429 26 8 2.0328 -0.7236 1.1444 27 1 -0.3634 0.5005 0.8975 28 1 -0.3633 0.5270 -0.8822 29 1 -0.3633 -1.0276 -0.0154 30 1 1.3276 -1.4920 -1.5771 31 1 2.3430 -0.0839 -2.0215 32 1 5.4397 -1.5947 -1.0630 33 1 4.4528 -1.2252 -2.4975 34 1 4.7259 0.0240 -1.2594 35 1 6.7111 -2.2905 0.4051 36 1 5.6646 -0.8558 0.5588 37 1 6.6113 -0.3500 2.7685 38 1 7.9413 -0.5296 1.5985 39 1 8.2493 -2.8883 2.3298 40 1 10.7879 -0.2579 1.8806 41 1 6.0958 -2.1675 4.3699 42 1 7.0502 -3.6703 4.3661 43 1 4.7911 -3.9300 3.2799 44 1 6.1406 -4.2916 2.1751 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568298501.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:35 Heat of formation + Delta-G solvation = -92.660780 kcal Electronic energy + Delta-G solvation = -23489.957311 eV Core-core repulsion = 20213.697939 eV Total energy + Delta-G solvation = -3276.259372 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.54803 -38.72918 -36.69961 -34.03834 -33.30486 -32.29135 -31.12677 -30.08451 -27.34614 -26.90035 -25.67873 -22.90663 -22.51623 -21.63162 -20.84653 -19.78389 -18.50269 -17.14044 -16.25356 -16.17083 -16.05711 -15.24373 -14.68374 -14.57875 -14.34907 -14.01294 -13.39892 -13.24766 -12.91930 -12.86663 -12.73204 -12.55415 -12.41184 -12.29127 -12.09503 -11.71713 -11.45373 -11.36068 -11.18550 -10.96743 -10.78121 -10.66025 -10.62570 -10.39677 -10.12844 -9.88049 -9.67090 -9.26289 -9.19991 -8.90743 -8.40444 -8.01705 -6.05830 -4.11707 2.80071 3.22958 3.26848 3.33919 3.37804 4.02273 4.33806 4.39065 4.52052 4.71665 4.80710 5.03428 5.06978 5.19327 5.23482 5.25975 5.40417 5.48275 5.57756 5.60661 5.65990 5.75642 5.79252 5.89490 5.92087 5.97880 6.01043 6.03517 6.09759 6.13678 6.27715 6.42292 6.63354 6.73109 6.89351 7.01747 7.11829 7.24633 7.63372 7.87850 7.88933 8.00703 8.37592 8.54116 8.91622 9.53579 10.99672 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.026559 B = 0.004293 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.010777 B = 6520.764607 C = 6856.803294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.066 3.934 3 H 0.070 0.930 4 C -0.144 4.144 5 C -0.111 4.111 6 H 0.086 0.914 7 C -0.157 4.157 8 C 0.062 3.938 9 H 0.093 0.907 10 C 0.519 3.481 11 O -0.540 6.540 12 N -0.597 5.597 13 C 0.094 3.906 14 C -0.125 4.125 15 C 0.048 3.952 16 C -0.512 4.512 17 H 0.055 0.945 18 C 0.062 3.938 19 N -0.892 5.892 20 Si 0.890 3.110 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.275 1.275 24 C -0.124 4.124 25 C 0.113 3.887 26 O -0.345 6.345 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.040 0.960 38 H 0.105 0.895 39 H 0.028 0.972 40 H 0.260 0.740 41 H 0.052 0.948 42 H 0.061 0.939 43 H 0.078 0.922 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.403 1.660 -9.469 15.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.008 3.992 3 H 0.088 0.912 4 C -0.182 4.182 5 C -0.131 4.131 6 H 0.104 0.896 7 C -0.214 4.214 8 C 0.001 3.999 9 H 0.111 0.889 10 C 0.305 3.695 11 O -0.418 6.418 12 N -0.331 5.331 13 C -0.028 4.028 14 C -0.164 4.164 15 C 0.030 3.970 16 C -0.550 4.550 17 H 0.073 0.927 18 C -0.139 4.139 19 N -0.531 5.531 20 Si 0.718 3.282 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.200 1.200 24 C -0.162 4.162 25 C -0.009 4.009 26 O -0.263 6.263 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.059 0.941 38 H 0.123 0.877 39 H 0.046 0.954 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.080 0.920 43 H 0.096 0.904 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.820 1.303 -9.110 15.781 hybrid contribution 0.974 0.569 0.441 1.211 sum -11.847 1.872 -8.669 14.799 Atomic orbital electron populations 1.21784 0.93068 1.03022 1.02330 1.23032 0.95484 0.95455 0.85189 0.91185 1.23125 0.97094 0.99677 0.98315 1.22450 0.96098 1.01663 0.92843 0.89595 1.22134 0.97063 1.01937 1.00309 1.23001 0.86350 0.96791 0.93796 0.88932 1.20048 0.82484 0.85561 0.81407 1.90651 1.53263 1.47829 1.50036 1.48166 1.04768 1.36329 1.43789 1.22481 0.90483 0.94118 0.95721 1.22128 0.97174 0.99950 0.97127 1.18633 0.91205 0.93080 0.94082 1.21212 1.06752 1.34046 0.92960 0.92681 1.24950 0.97709 0.96120 0.95123 1.69830 1.28833 1.42204 1.12280 0.86617 0.81440 0.78652 0.81445 1.20714 1.21248 1.19967 1.22017 0.97029 0.99781 0.97346 1.21712 0.98188 0.89236 0.91733 1.89246 1.25425 1.74131 1.37490 0.91779 0.91202 0.91684 0.90382 0.90092 0.90735 0.91835 0.91847 0.91621 0.90800 0.94142 0.87702 0.95409 0.92989 0.92899 0.92028 0.90384 0.92118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.52 37.16 0.35 -1.02 16 2 C 0.07 0.75 3.92 -25.95 -0.10 0.65 16 3 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 4 C -0.14 -1.44 6.29 -25.07 -0.16 -1.60 16 5 C -0.11 -1.35 3.25 -88.96 -0.29 -1.63 16 6 H 0.09 1.13 7.86 -51.93 -0.41 0.72 16 7 C -0.16 -1.62 7.72 37.16 0.29 -1.33 16 8 C 0.06 0.94 2.59 -27.11 -0.07 0.87 16 9 H 0.09 1.34 6.32 -51.93 -0.33 1.01 16 10 C 0.52 9.68 6.85 -10.99 -0.08 9.61 16 11 O -0.54 -11.87 16.13 -12.44 -0.20 -12.07 16 12 N -0.60 -10.88 2.97 -172.50 -0.51 -11.39 16 13 C 0.09 1.62 4.87 -3.48 -0.02 1.60 16 14 C -0.13 -2.70 5.17 -26.38 -0.14 -2.83 16 15 C 0.05 1.14 2.06 -91.73 -0.19 0.95 16 16 C -0.51 -13.49 8.56 -34.44 -0.29 -13.78 16 17 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 18 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 19 N -0.89 -23.99 11.30 55.43 0.63 -23.37 16 20 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 24 C -0.12 -2.54 5.30 -26.61 -0.14 -2.68 16 25 C 0.11 2.10 6.41 -3.70 -0.02 2.08 16 26 O -0.34 -5.58 10.70 -53.22 -0.57 -6.14 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.66 8.12 -51.93 -0.42 0.23 16 30 H 0.08 0.73 7.86 -51.93 -0.41 0.33 16 31 H 0.08 0.64 7.74 -51.93 -0.40 0.24 16 32 H 0.07 0.85 5.37 -51.93 -0.28 0.57 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.60 8.00 -51.93 -0.42 0.19 16 35 H 0.07 1.11 7.73 -51.93 -0.40 0.71 16 36 H 0.07 1.09 3.50 -51.93 -0.18 0.91 16 37 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.10 2.49 6.03 -51.93 -0.31 2.18 16 39 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 41 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.08 1.46 7.04 -51.93 -0.37 1.10 16 44 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 334.69 15.07 5.04 5.04 Total: -1.00 -30.11 334.69 -8.85 -38.96 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -7.27 Total: 0.90 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: -0.95 Total: -7.57 kcal Atomic # 7 Polarization: -34.87 SS G_CDS: 0.11 Total: -34.76 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: -0.77 Total: -18.21 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.11 -8.85 -38.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568298501.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.697 kcal (2) G-P(sol) polarization free energy of solvation -30.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds