Wall clock time and date at job start Tue Mar 31 2020 05:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99900 * 2 1 3 5 5 C 1.53002 * 109.47069 * 65.00288 * 4 2 1 6 6 N 1.46500 * 109.47038 * 179.97438 * 5 4 2 7 7 C 1.46498 * 119.99972 * 89.99563 * 6 5 4 8 8 C 1.50708 * 109.47147 * 90.00085 * 7 6 5 9 9 H 1.08005 * 119.99427 * 359.97438 * 8 7 6 10 10 C 1.37870 * 120.00463 * 180.02562 * 8 7 6 11 11 N 1.31517 * 119.99773 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 120.00264 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.46971 * 90.00015 * 12 10 8 14 14 H 1.48497 * 109.47059 * 209.99801 * 12 10 8 15 15 H 1.48497 * 109.46880 * 329.99896 * 12 10 8 16 16 C 1.34775 * 120.00366 * 269.99659 * 6 5 4 17 17 O 1.21282 * 119.99750 * 0.02562 * 16 6 5 18 18 C 1.50702 * 120.00566 * 179.97438 * 16 6 5 19 19 H 1.08998 * 110.73353 * 298.02631 * 18 16 6 20 20 C 1.54981 * 110.83482 * 174.36881 * 18 16 6 21 21 C 1.54280 * 103.75103 * 204.70656 * 20 18 16 22 22 C 1.51453 * 106.84799 * 23.12170 * 21 20 18 23 23 O 1.20760 * 126.34069 * 180.37784 * 22 21 20 24 24 C 1.51847 * 107.31739 * 0.35810 * 22 21 20 25 25 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 26 26 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 28 28 H 1.09000 * 109.47050 * 239.99996 * 2 1 3 29 29 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 30 30 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 32 32 H 1.09000 * 109.46738 * 184.99930 * 4 2 1 33 33 H 1.08994 * 109.47465 * 305.00017 * 4 2 1 34 34 H 1.09000 * 109.47048 * 299.99452 * 5 4 2 35 35 H 1.08994 * 109.47199 * 59.99565 * 5 4 2 36 36 H 1.09000 * 109.47370 * 209.99721 * 7 6 5 37 37 H 1.08999 * 109.47541 * 330.00457 * 7 6 5 38 38 H 0.97001 * 119.99636 * 179.97438 * 11 10 8 39 39 H 1.09000 * 110.56702 * 323.27106 * 20 18 16 40 40 H 1.09005 * 110.56946 * 86.14070 * 20 18 16 41 41 H 1.08995 * 109.98151 * 263.77658 * 21 20 18 42 42 H 1.08997 * 110.01835 * 142.49039 * 21 20 18 43 43 H 1.09003 * 110.43764 * 217.46935 * 24 22 21 44 44 H 1.08999 * 110.54087 * 94.99889 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6352 -2.1955 1.1880 6 7 2.1239 -2.8862 2.3839 7 6 1.2844 -2.9589 3.5823 8 6 0.4302 -4.1990 3.5228 9 1 0.5049 -4.8661 2.6766 10 6 -0.4474 -4.4816 4.5479 11 7 -0.5387 -3.6690 5.5780 12 14 -1.5057 -6.0192 4.4745 13 1 -0.7836 -7.1480 5.1144 14 1 -2.7819 -5.7765 5.1939 15 1 -1.7927 -6.3552 3.0568 16 6 3.3458 -3.4548 2.3817 17 8 4.0410 -3.3943 1.3897 18 6 3.8489 -4.1649 3.6121 19 1 3.9273 -3.4739 4.4514 20 6 5.2075 -4.8562 3.3328 21 6 5.2600 -5.9950 4.3723 22 6 3.8289 -6.2974 4.7649 23 8 3.4660 -7.1273 5.5636 24 6 2.9348 -5.3633 3.9687 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 3.1263 -0.6443 1.2952 33 1 1.6053 -0.2618 2.1370 34 1 0.5488 -2.2724 1.1420 35 1 2.0698 -2.6550 0.3003 36 1 1.9183 -2.9965 4.4682 37 1 0.6437 -2.0785 3.6311 38 1 -1.1564 -3.8676 6.2991 39 1 5.2307 -5.2602 2.3207 40 1 6.0310 -4.1588 3.4868 41 1 5.8266 -5.6752 5.2468 42 1 5.7208 -6.8800 3.9334 43 1 2.0928 -5.0323 4.5766 44 1 2.5796 -5.8541 3.0626 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572244862.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:59 Heat of formation + Delta-G solvation = -103.958181 kcal Electronic energy + Delta-G solvation = -23272.311330 eV Core-core repulsion = 19995.562066 eV Total energy + Delta-G solvation = -3276.749264 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.92362 -38.60006 -36.69260 -35.27747 -34.83596 -32.63587 -29.92124 -28.20097 -27.33720 -27.01669 -26.39635 -23.44689 -23.03693 -20.97232 -19.72886 -18.96440 -18.22603 -16.68578 -16.50396 -15.82724 -15.50495 -15.05735 -14.74092 -14.43327 -14.27124 -13.97662 -13.64848 -13.31003 -13.20972 -12.72542 -12.53831 -12.46580 -12.19499 -12.07298 -11.75178 -11.55736 -11.35292 -11.14275 -11.04013 -10.88186 -10.80632 -10.70854 -10.53962 -10.46339 -10.35784 -10.23360 -10.09939 -9.74157 -9.27261 -8.81867 -8.58010 -7.75086 -6.24413 -4.29568 2.36233 3.23547 3.29518 3.31284 3.36651 3.85334 4.30186 4.60045 4.79511 5.04023 5.07982 5.09551 5.13569 5.19907 5.26794 5.48209 5.63704 5.71044 5.71832 5.73455 5.80599 5.84399 5.89215 5.97973 6.00103 6.05664 6.11194 6.21019 6.24530 6.32003 6.34716 6.38338 6.56363 6.61046 6.66538 6.74703 7.00159 7.16624 7.49732 7.70349 7.92463 7.98057 8.29581 8.72331 8.96673 9.35331 10.81310 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.012574 B = 0.006766 C = 0.004712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.250338 B = 4137.394344 C = 5940.367294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.093 4.093 3 C -0.145 4.145 4 C -0.127 4.127 5 C 0.119 3.881 6 N -0.593 5.593 7 C 0.235 3.765 8 C -0.536 4.536 9 H 0.063 0.937 10 C 0.068 3.932 11 N -0.887 5.887 12 Si 0.887 3.113 13 H -0.274 1.274 14 H -0.285 1.285 15 H -0.273 1.273 16 C 0.524 3.476 17 O -0.573 6.573 18 C -0.102 4.102 19 H 0.101 0.899 20 C -0.099 4.099 21 C -0.186 4.186 22 C 0.366 3.634 23 O -0.455 6.455 24 C -0.175 4.175 25 H 0.048 0.952 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.038 0.962 37 H 0.036 0.964 38 H 0.267 0.733 39 H 0.082 0.918 40 H 0.073 0.927 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.146 0.854 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.271 4.482 -5.877 9.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.112 4.112 3 C -0.202 4.202 4 C -0.166 4.166 5 C -0.004 4.004 6 N -0.322 5.322 7 C 0.115 3.885 8 C -0.575 4.575 9 H 0.081 0.919 10 C -0.136 4.136 11 N -0.524 5.524 12 Si 0.715 3.285 13 H -0.199 1.199 14 H -0.210 1.210 15 H -0.198 1.198 16 C 0.312 3.688 17 O -0.455 6.455 18 C -0.123 4.123 19 H 0.119 0.881 20 C -0.137 4.137 21 C -0.224 4.224 22 C 0.242 3.758 23 O -0.328 6.328 24 C -0.212 4.212 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.076 0.924 39 H 0.101 0.899 40 H 0.092 0.908 41 H 0.111 0.889 42 H 0.111 0.889 43 H 0.164 0.836 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 6.302 4.114 -5.771 9.484 hybrid contribution -0.741 -0.697 0.116 1.024 sum 5.561 3.417 -5.655 8.636 Atomic orbital electron populations 1.21902 0.95248 1.02212 1.01303 1.21045 0.95866 0.95843 0.98488 1.21822 1.00778 0.96261 1.01343 1.21984 1.00990 0.95978 0.97599 1.21358 0.99610 0.91011 0.88445 1.48222 1.15933 1.52326 1.15700 1.19510 0.89809 0.97785 0.81398 1.21450 1.22073 1.07935 1.06011 0.91890 1.24897 0.96638 0.96885 0.95200 1.69907 1.36978 1.36628 1.08913 0.86633 0.80027 0.83441 0.78446 1.19928 1.21021 1.19751 1.20205 0.81445 0.78369 0.88780 1.90586 1.57275 1.62083 1.35515 1.22012 0.95752 0.97263 0.97281 0.88085 1.22157 0.96264 0.96054 0.99192 1.22740 0.97843 1.00789 1.01015 1.25229 0.92437 0.79795 0.78314 1.90379 1.82297 1.30860 1.29276 1.23379 1.00212 0.94536 1.03095 0.93275 0.92093 0.92620 0.91379 0.92803 0.92931 0.93084 0.92091 0.91819 0.90302 0.91250 0.94372 0.94590 0.92364 0.89931 0.90841 0.88867 0.88865 0.83603 0.87983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 8.95 37.16 0.33 -1.48 16 2 C -0.09 -1.18 2.92 -90.62 -0.26 -1.45 16 3 C -0.14 -1.61 9.19 37.16 0.34 -1.26 16 4 C -0.13 -1.93 5.01 -26.73 -0.13 -2.06 16 5 C 0.12 2.08 5.16 -4.04 -0.02 2.06 16 6 N -0.59 -11.61 2.46 -175.06 -0.43 -12.04 16 7 C 0.23 5.15 4.69 -5.19 -0.02 5.12 16 8 C -0.54 -12.83 6.05 -34.44 -0.21 -13.04 16 9 H 0.06 1.54 7.62 -52.48 -0.40 1.14 16 10 C 0.07 1.70 5.18 -17.82 -0.09 1.61 16 11 N -0.89 -23.39 13.29 55.43 0.74 -22.66 16 12 Si 0.89 20.22 29.54 -169.99 -5.02 15.20 16 13 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 16 C 0.52 10.13 7.07 -10.99 -0.08 10.05 16 17 O -0.57 -12.01 15.37 5.56 0.09 -11.93 16 18 C -0.10 -1.73 2.36 -89.73 -0.21 -1.94 16 19 H 0.10 1.64 7.54 -51.93 -0.39 1.24 16 20 C -0.10 -1.40 5.92 -25.02 -0.15 -1.55 16 21 C -0.19 -2.48 6.69 -26.84 -0.18 -2.66 16 22 C 0.37 6.40 7.88 -28.10 -0.22 6.18 16 23 O -0.45 -9.46 17.99 6.00 0.11 -9.35 16 24 C -0.18 -3.25 4.30 -26.32 -0.11 -3.36 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.78 6.56 -51.93 -0.34 0.44 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.08 1.38 6.50 -51.93 -0.34 1.05 16 35 H 0.07 1.24 7.42 -51.93 -0.39 0.86 16 36 H 0.04 0.86 5.94 -51.93 -0.31 0.55 16 37 H 0.04 0.84 8.07 -51.93 -0.42 0.42 16 38 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 39 H 0.08 1.24 7.52 -51.93 -0.39 0.85 16 40 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.15 3.18 4.73 -51.93 -0.25 2.94 16 44 H 0.10 1.94 7.81 -51.93 -0.41 1.54 16 LS Contribution 348.92 15.07 5.26 5.26 Total: -1.00 -27.74 348.92 -7.69 -35.43 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -7.41 Total: 3.85 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: -1.02 Total: -3.76 kcal Atomic # 7 Polarization: -35.00 SS G_CDS: 0.31 Total: -34.69 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: 0.19 Total: -21.28 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -27.74 -7.69 -35.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572244862.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.527 kcal (2) G-P(sol) polarization free energy of solvation -27.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds