Wall clock time and date at job start Tue Mar 31 2020 05:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50699 * 119.99861 * 2 1 4 4 C 1.53004 * 109.47228 * 119.99971 * 3 2 1 5 5 O 1.42897 * 109.47467 * 359.97438 * 3 2 1 6 6 C 1.52997 * 109.46888 * 239.99687 * 3 2 1 7 7 C 1.50697 * 109.47082 * 55.94142 * 6 3 2 8 8 O 1.21283 * 120.00370 * 5.44760 * 7 6 3 9 9 N 1.34779 * 119.99966 * 185.44499 * 7 6 3 10 10 C 1.46926 * 120.63319 * 359.71805 * 9 7 6 11 11 C 1.53623 * 108.54434 * 126.36673 * 10 9 7 12 12 C 1.53046 * 109.24062 * 54.85905 * 11 10 9 13 13 C 1.52995 * 109.46004 * 178.48878 * 12 11 10 14 14 C 1.50694 * 109.47390 * 295.06833 * 13 12 11 15 15 H 1.08007 * 119.99944 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00462 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00266 * 180.02562 * 16 14 13 18 18 Si 1.86805 * 119.99484 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.46972 * 90.00447 * 18 16 14 20 20 H 1.48507 * 109.46992 * 209.99849 * 18 16 14 21 21 H 1.48497 * 109.47314 * 329.99793 * 18 16 14 22 22 C 1.53045 * 109.53568 * 298.51154 * 12 11 10 23 23 C 1.46926 * 120.62994 * 179.97438 * 9 7 6 24 24 H 1.07999 * 120.00306 * 180.02562 * 1 2 3 25 25 H 1.08006 * 120.00048 * 359.97438 * 1 2 3 26 26 H 1.07996 * 119.99972 * 179.97438 * 2 1 3 27 27 H 1.08998 * 109.46761 * 304.93540 * 4 3 2 28 28 H 1.09002 * 109.46860 * 64.93616 * 4 3 2 29 29 H 1.08991 * 109.47178 * 184.93757 * 4 3 2 30 30 H 0.96704 * 113.99953 * 300.00046 * 5 3 2 31 31 H 1.09003 * 109.47230 * 175.93625 * 6 3 2 32 32 H 1.08996 * 109.47602 * 295.94113 * 6 3 2 33 33 H 1.08998 * 109.58793 * 246.20721 * 10 9 7 34 34 H 1.09005 * 109.58311 * 6.62724 * 10 9 7 35 35 H 1.09002 * 109.63639 * 294.87060 * 11 10 9 36 36 H 1.08999 * 109.42843 * 174.72660 * 11 10 9 37 37 H 1.09003 * 109.44598 * 58.52199 * 12 11 10 38 38 H 1.09006 * 109.47189 * 55.07155 * 13 12 11 39 39 H 1.09001 * 109.47248 * 175.06892 * 13 12 11 40 40 H 0.97004 * 119.99802 * 179.97438 * 17 16 14 41 41 H 1.08994 * 109.49641 * 301.41230 * 22 12 11 42 42 H 1.08996 * 109.51915 * 181.32964 * 22 12 11 43 43 H 1.08998 * 109.58758 * 353.37452 * 23 9 7 44 44 H 1.09007 * 109.58777 * 113.65317 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3862 1.2493 5 8 1.1349 2.3913 -0.0006 6 6 2.9431 1.3861 -1.2492 7 6 2.0889 1.2063 -2.4776 8 8 0.8831 1.1297 -2.3719 9 7 2.6648 1.1307 -3.6938 10 6 4.1237 1.2281 -3.8386 11 6 4.6190 0.0066 -4.6275 12 6 3.8604 -0.0786 -5.9540 13 6 4.3763 -1.2720 -6.7605 14 6 5.8166 -1.0387 -7.1374 15 1 6.3144 -0.1302 -6.8319 16 6 6.4992 -1.9854 -7.8714 17 7 7.7563 -1.7820 -8.1999 18 14 5.6384 -3.5570 -8.3992 19 1 5.0000 -3.3507 -9.7240 20 1 6.6312 -4.6573 -8.4942 21 1 4.5998 -3.9124 -7.3991 22 6 2.3657 -0.2574 -5.6782 23 6 1.8453 0.9550 -4.9005 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9354 0.0004 26 1 1.8500 -0.9353 0.0004 27 1 2.3276 1.2407 2.1370 28 1 3.7078 0.6106 1.2061 29 1 3.4205 2.3650 1.2946 30 1 0.5439 2.4030 -0.7659 31 1 3.4327 2.3593 -1.2864 32 1 3.6980 0.6007 -1.2136 33 1 4.3773 2.1415 -4.3766 34 1 4.5886 1.2413 -2.8528 35 1 4.4421 -0.8998 -4.0484 36 1 5.6860 0.1105 -4.8246 37 1 4.0177 0.8386 -6.5216 38 1 4.3003 -2.1775 -6.1584 39 1 3.7780 -1.3855 -7.6645 40 1 8.2366 -2.4483 -8.7160 41 1 2.2100 -1.1612 -5.0892 42 1 1.8285 -0.3417 -6.6228 43 1 0.8066 0.7879 -4.6157 44 1 1.9145 1.8475 -5.5225 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583501251.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:15 Heat of formation + Delta-G solvation = -82.692835 kcal Electronic energy + Delta-G solvation = -22944.407844 eV Core-core repulsion = 19668.580715 eV Total energy + Delta-G solvation = -3275.827129 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.52547 -38.52625 -36.95429 -34.15820 -33.05330 -32.31289 -31.46854 -30.76473 -28.89380 -27.93163 -24.63519 -23.13644 -22.51417 -21.52302 -20.02628 -19.57053 -18.76114 -17.34566 -16.81848 -16.61638 -16.16624 -15.61052 -14.90383 -14.47295 -14.38060 -13.90980 -13.76184 -13.42727 -13.23726 -13.07903 -12.64776 -12.58233 -12.37082 -12.25720 -12.20668 -12.03228 -11.72751 -11.51325 -11.19617 -11.12152 -10.92179 -10.71321 -10.40037 -10.18843 -10.05771 -9.77907 -9.72914 -9.53243 -9.17414 -9.11687 -8.58083 -8.46195 -6.09090 -4.06756 2.33345 2.62272 3.05033 3.26861 3.35040 3.38304 4.15554 4.40704 4.41482 4.61245 4.67395 4.98726 5.14650 5.22102 5.23697 5.27474 5.30327 5.38034 5.39252 5.42565 5.56261 5.60289 5.63379 5.69352 5.85956 5.92876 5.95475 5.99162 6.21809 6.23308 6.36645 6.54644 6.59660 6.73580 6.78843 6.80017 6.89968 7.19599 7.37946 7.45080 7.65309 7.74986 8.18548 8.48302 8.95031 9.54138 11.04052 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.028656 B = 0.003676 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.873799 B = 7616.081481 C = 7772.533832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.191 4.191 3 C 0.178 3.822 4 C -0.135 4.135 5 O -0.563 6.563 6 C -0.168 4.168 7 C 0.516 3.484 8 O -0.550 6.550 9 N -0.604 5.604 10 C 0.101 3.899 11 C -0.120 4.120 12 C -0.072 4.072 13 C -0.009 4.009 14 C -0.517 4.517 15 H 0.073 0.927 16 C 0.067 3.933 17 N -0.904 5.904 18 Si 0.877 3.123 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.266 1.266 22 C -0.132 4.132 23 C 0.112 3.888 24 H 0.092 0.908 25 H 0.101 0.899 26 H 0.108 0.892 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.386 0.614 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.058 0.942 36 H 0.090 0.910 37 H 0.064 0.936 38 H 0.015 0.985 39 H 0.011 0.989 40 H 0.263 0.737 41 H 0.060 0.940 42 H 0.070 0.930 43 H 0.086 0.914 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.448 6.078 14.990 19.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.209 4.209 3 C 0.137 3.863 4 C -0.192 4.192 5 O -0.374 6.374 6 C -0.208 4.208 7 C 0.305 3.695 8 O -0.430 6.430 9 N -0.336 5.336 10 C -0.021 4.021 11 C -0.158 4.158 12 C -0.091 4.091 13 C -0.047 4.047 14 C -0.555 4.555 15 H 0.091 0.909 16 C -0.134 4.134 17 N -0.543 5.543 18 Si 0.705 3.295 19 H -0.204 1.204 20 H -0.215 1.215 21 H -0.191 1.191 22 C -0.170 4.170 23 C -0.010 4.010 24 H 0.110 0.890 25 H 0.119 0.881 26 H 0.126 0.874 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.239 0.761 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.077 0.923 36 H 0.109 0.891 37 H 0.083 0.917 38 H 0.033 0.967 39 H 0.030 0.970 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.088 0.912 43 H 0.104 0.896 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.623 6.099 15.483 19.743 hybrid contribution -0.376 -1.202 -1.169 1.719 sum -10.999 4.897 14.314 18.704 Atomic orbital electron populations 1.23611 0.95961 1.01583 0.97668 1.23263 0.96859 0.97891 1.02871 1.19801 0.88071 0.85219 0.93214 1.21712 0.98739 1.02660 0.96086 1.86408 1.51038 1.48794 1.51122 1.22481 0.99909 1.05091 0.93319 1.20553 0.88602 0.75861 0.84479 1.90586 1.14841 1.51585 1.85961 1.48202 1.08080 1.71018 1.06302 1.22072 0.78737 1.00094 1.01211 1.21985 1.01903 0.95950 0.95955 1.21006 0.91624 1.00825 0.95637 1.19615 0.96986 0.93448 0.94610 1.21125 0.94611 1.05907 1.33859 0.90851 1.25021 0.94694 0.98168 0.95560 1.69908 1.09553 1.35593 1.39205 0.86820 0.79658 0.83594 0.79439 1.20354 1.21452 1.19111 1.22045 0.98059 0.97220 0.99661 1.21629 0.95585 0.98499 0.85272 0.88995 0.88100 0.87394 0.91602 0.90960 0.91589 0.76124 0.87925 0.87917 0.91193 0.90272 0.92332 0.89137 0.91731 0.96718 0.97045 0.92762 0.92148 0.91161 0.89589 0.91761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 12.63 29.01 0.37 -1.40 16 2 C -0.19 -2.18 7.43 -36.03 -0.27 -2.45 16 3 C 0.18 1.93 1.08 -91.77 -0.10 1.83 16 4 C -0.13 -1.18 8.83 37.16 0.33 -0.85 16 5 O -0.56 -7.02 11.93 -52.36 -0.62 -7.64 16 6 C -0.17 -1.73 3.40 -27.89 -0.09 -1.83 16 7 C 0.52 6.75 7.18 -10.99 -0.08 6.67 16 8 O -0.55 -8.20 11.37 -11.57 -0.13 -8.33 16 9 N -0.60 -7.99 2.97 -172.53 -0.51 -8.50 16 10 C 0.10 1.27 6.37 -3.49 -0.02 1.24 16 11 C -0.12 -1.92 5.21 -26.38 -0.14 -2.06 16 12 C -0.07 -1.29 2.10 -90.58 -0.19 -1.48 16 13 C -0.01 -0.21 3.52 -27.89 -0.10 -0.31 16 14 C -0.52 -13.86 8.94 -34.44 -0.31 -14.17 16 15 H 0.07 2.09 7.30 -52.48 -0.38 1.70 16 16 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 17 N -0.90 -27.05 13.96 55.43 0.77 -26.27 16 18 Si 0.88 21.27 27.47 -169.99 -4.67 16.60 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 22 C -0.13 -2.02 5.36 -26.63 -0.14 -2.16 16 23 C 0.11 1.54 6.43 -3.73 -0.02 1.51 16 24 H 0.09 0.97 8.06 -52.49 -0.42 0.55 16 25 H 0.10 1.20 6.41 -52.48 -0.34 0.86 16 26 H 0.11 1.15 8.06 -52.49 -0.42 0.73 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.39 4.85 5.78 45.56 0.26 5.12 16 31 H 0.10 0.94 8.11 -51.93 -0.42 0.52 16 32 H 0.10 0.93 7.42 -51.93 -0.39 0.54 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.08 0.80 5.89 -51.93 -0.31 0.49 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.09 1.62 6.91 -51.93 -0.36 1.26 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.01 0.34 7.20 -51.93 -0.37 -0.04 16 39 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16 40 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 41 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.09 1.21 7.01 -51.93 -0.36 0.84 16 44 H 0.06 0.82 8.14 -51.92 -0.42 0.40 16 LS Contribution 339.68 15.07 5.12 5.12 Total: -1.00 -30.44 339.68 -7.79 -38.23 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -6.88 Total: 4.45 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: -0.87 Total: -13.66 kcal Atomic # 7 Polarization: -35.03 SS G_CDS: 0.26 Total: -34.77 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -0.76 Total: -15.98 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.67 Total: 16.60 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.44 -7.79 -38.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583501251.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.461 kcal (2) G-P(sol) polarization free energy of solvation -30.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds