Wall clock time and date at job start Tue Mar 31 2020 05:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50699 * 119.99861 * 2 1 4 4 C 1.53004 * 109.47228 * 119.99971 * 3 2 1 5 5 O 1.42897 * 109.47467 * 359.97438 * 3 2 1 6 6 C 1.52997 * 109.46888 * 239.99687 * 3 2 1 7 7 C 1.50697 * 109.47082 * 55.94142 * 6 3 2 8 8 O 1.21283 * 120.00370 * 5.44760 * 7 6 3 9 9 N 1.34779 * 119.99966 * 185.44499 * 7 6 3 10 10 C 1.46926 * 120.63319 * 359.71805 * 9 7 6 11 11 C 1.53623 * 108.54434 * 126.36673 * 10 9 7 12 12 C 1.53046 * 109.24062 * 54.85905 * 11 10 9 13 13 C 1.52995 * 109.46004 * 178.48878 * 12 11 10 14 14 C 1.50694 * 109.47390 * 295.06833 * 13 12 11 15 15 H 1.08007 * 119.99944 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00462 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00266 * 180.02562 * 16 14 13 18 18 Si 1.86805 * 119.99484 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.46972 * 90.00447 * 18 16 14 20 20 H 1.48507 * 109.46992 * 209.99849 * 18 16 14 21 21 H 1.48497 * 109.47314 * 329.99793 * 18 16 14 22 22 C 1.53045 * 109.53568 * 298.51154 * 12 11 10 23 23 C 1.46926 * 120.62994 * 179.97438 * 9 7 6 24 24 H 1.07999 * 120.00306 * 180.02562 * 1 2 3 25 25 H 1.08006 * 120.00048 * 359.97438 * 1 2 3 26 26 H 1.07996 * 119.99972 * 179.97438 * 2 1 3 27 27 H 1.08998 * 109.46761 * 304.93540 * 4 3 2 28 28 H 1.09002 * 109.46860 * 64.93616 * 4 3 2 29 29 H 1.08991 * 109.47178 * 184.93757 * 4 3 2 30 30 H 0.96704 * 113.99953 * 300.00046 * 5 3 2 31 31 H 1.09003 * 109.47230 * 175.93625 * 6 3 2 32 32 H 1.08996 * 109.47602 * 295.94113 * 6 3 2 33 33 H 1.08998 * 109.58793 * 246.20721 * 10 9 7 34 34 H 1.09005 * 109.58311 * 6.62724 * 10 9 7 35 35 H 1.09002 * 109.63639 * 294.87060 * 11 10 9 36 36 H 1.08999 * 109.42843 * 174.72660 * 11 10 9 37 37 H 1.09003 * 109.44598 * 58.52199 * 12 11 10 38 38 H 1.09006 * 109.47189 * 55.07155 * 13 12 11 39 39 H 1.09001 * 109.47248 * 175.06892 * 13 12 11 40 40 H 0.97004 * 119.99802 * 179.97438 * 17 16 14 41 41 H 1.08994 * 109.49641 * 301.41230 * 22 12 11 42 42 H 1.08996 * 109.51915 * 181.32964 * 22 12 11 43 43 H 1.08998 * 109.58758 * 353.37452 * 23 9 7 44 44 H 1.09007 * 109.58777 * 113.65317 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3862 1.2493 5 8 1.1349 2.3913 -0.0006 6 6 2.9431 1.3861 -1.2492 7 6 2.0889 1.2063 -2.4776 8 8 0.8831 1.1297 -2.3719 9 7 2.6648 1.1307 -3.6938 10 6 4.1237 1.2281 -3.8386 11 6 4.6190 0.0066 -4.6275 12 6 3.8604 -0.0786 -5.9540 13 6 4.3763 -1.2720 -6.7605 14 6 5.8166 -1.0387 -7.1374 15 1 6.3144 -0.1302 -6.8319 16 6 6.4992 -1.9854 -7.8714 17 7 7.7563 -1.7820 -8.1999 18 14 5.6384 -3.5570 -8.3992 19 1 5.0000 -3.3507 -9.7240 20 1 6.6312 -4.6573 -8.4942 21 1 4.5998 -3.9124 -7.3991 22 6 2.3657 -0.2574 -5.6782 23 6 1.8453 0.9550 -4.9005 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9354 0.0004 26 1 1.8500 -0.9353 0.0004 27 1 2.3276 1.2407 2.1370 28 1 3.7078 0.6106 1.2061 29 1 3.4205 2.3650 1.2946 30 1 0.5439 2.4030 -0.7659 31 1 3.4327 2.3593 -1.2864 32 1 3.6980 0.6007 -1.2136 33 1 4.3773 2.1415 -4.3766 34 1 4.5886 1.2413 -2.8528 35 1 4.4421 -0.8998 -4.0484 36 1 5.6860 0.1105 -4.8246 37 1 4.0177 0.8386 -6.5216 38 1 4.3003 -2.1775 -6.1584 39 1 3.7780 -1.3855 -7.6645 40 1 8.2366 -2.4483 -8.7160 41 1 2.2100 -1.1612 -5.0892 42 1 1.8285 -0.3417 -6.6228 43 1 0.8066 0.7879 -4.6157 44 1 1.9145 1.8475 -5.5225 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583501251.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:14 Heat of formation + Delta-G solvation = -101.047773 kcal Electronic energy + Delta-G solvation = -22945.203774 eV Core-core repulsion = 19668.580715 eV Total energy + Delta-G solvation = -3276.623059 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.52343 -39.57156 -38.06590 -35.66578 -34.18754 -33.85583 -32.54661 -31.76713 -30.35994 -28.96594 -26.12804 -24.25684 -23.58594 -22.88906 -21.31909 -20.53214 -19.89478 -18.84901 -18.27106 -17.61125 -17.14548 -16.60667 -16.35069 -15.83799 -15.41040 -15.26959 -15.04030 -14.78561 -14.39724 -14.27352 -14.16198 -13.62134 -13.48129 -13.25461 -13.10222 -13.03004 -12.88366 -12.84988 -12.57402 -12.41626 -12.16829 -11.98679 -11.91294 -11.73131 -11.33097 -11.23967 -11.05607 -10.93114 -10.77706 -10.69509 -10.07022 -9.56104 -8.25569 -6.26903 1.35072 1.37322 1.46435 1.47741 1.64243 2.04908 2.37287 3.10304 3.34165 3.49144 3.79082 3.86972 3.94601 4.00785 4.09013 4.21124 4.34086 4.39277 4.42911 4.56083 4.61351 4.66647 4.70145 4.82511 4.86959 4.89514 4.93861 4.96459 5.10376 5.14525 5.17528 5.23788 5.30353 5.37291 5.41742 5.61556 5.72685 5.73266 5.74657 5.93201 6.34150 6.44412 6.73606 6.80669 7.19162 7.37193 8.90539 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.028656 B = 0.003676 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.873799 B = 7616.081481 C = 7772.533832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.194 4.194 3 C 0.172 3.828 4 C -0.133 4.133 5 O -0.574 6.574 6 C -0.163 4.163 7 C 0.512 3.488 8 O -0.570 6.570 9 N -0.607 5.607 10 C 0.110 3.890 11 C -0.116 4.116 12 C -0.070 4.070 13 C -0.008 4.008 14 C -0.515 4.515 15 H 0.044 0.956 16 C 0.006 3.994 17 N -0.951 5.951 18 Si 0.940 3.060 19 H -0.270 1.270 20 H -0.287 1.287 21 H -0.252 1.252 22 C -0.122 4.122 23 C 0.117 3.883 24 H 0.098 0.902 25 H 0.093 0.907 26 H 0.117 0.883 27 H 0.060 0.940 28 H 0.091 0.909 29 H 0.071 0.929 30 H 0.383 0.617 31 H 0.120 0.880 32 H 0.122 0.878 33 H 0.078 0.922 34 H 0.110 0.890 35 H 0.055 0.945 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.012 0.988 39 H 0.012 0.988 40 H 0.264 0.736 41 H 0.053 0.947 42 H 0.077 0.923 43 H 0.084 0.916 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.305 5.936 16.053 20.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.212 4.212 3 C 0.131 3.869 4 C -0.190 4.190 5 O -0.385 6.385 6 C -0.203 4.203 7 C 0.302 3.698 8 O -0.451 6.451 9 N -0.339 5.339 10 C -0.012 4.012 11 C -0.154 4.154 12 C -0.089 4.089 13 C -0.045 4.045 14 C -0.553 4.553 15 H 0.062 0.938 16 C -0.191 4.191 17 N -0.592 5.592 18 Si 0.765 3.235 19 H -0.196 1.196 20 H -0.213 1.213 21 H -0.175 1.175 22 C -0.160 4.160 23 C -0.006 4.006 24 H 0.116 0.884 25 H 0.112 0.888 26 H 0.134 0.866 27 H 0.080 0.920 28 H 0.110 0.890 29 H 0.090 0.910 30 H 0.235 0.765 31 H 0.138 0.862 32 H 0.140 0.860 33 H 0.096 0.904 34 H 0.128 0.872 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.030 0.970 39 H 0.030 0.970 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.095 0.905 43 H 0.102 0.898 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.493 5.966 16.562 21.024 hybrid contribution -0.088 -1.110 -1.489 1.860 sum -11.581 4.856 15.073 19.619 Atomic orbital electron populations 1.23673 0.96369 1.01597 0.98501 1.23474 0.96919 0.98660 1.02149 1.20028 0.88049 0.84425 0.94434 1.21743 0.98738 1.03764 0.94765 1.86408 1.51403 1.49553 1.51089 1.22522 0.99670 1.06699 0.91407 1.21054 0.88658 0.75118 0.84953 1.90588 1.15952 1.52342 1.86224 1.48255 1.08172 1.71120 1.06328 1.22026 0.78424 0.98346 1.02379 1.21868 1.00268 0.97772 0.95516 1.20925 0.93670 0.98380 0.95919 1.19586 0.94327 0.95372 0.95239 1.21456 0.96632 1.04513 1.32691 0.93821 1.25895 0.95317 1.01828 0.96042 1.70052 1.11326 1.37035 1.40798 0.85808 0.78808 0.79389 0.79505 1.19584 1.21336 1.17539 1.21919 0.95958 0.97839 1.00285 1.21537 0.95479 0.98022 0.85537 0.88407 0.88832 0.86552 0.92047 0.89007 0.90990 0.76483 0.86204 0.86045 0.90406 0.87213 0.92661 0.91589 0.92376 0.96977 0.96983 0.92755 0.92783 0.90457 0.89751 0.90714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.69 12.63 67.78 0.86 -2.83 16 2 C -0.19 -4.08 7.43 25.65 0.19 -3.89 16 3 C 0.17 3.32 1.08 -11.54 -0.01 3.31 16 4 C -0.13 -1.96 8.83 71.98 0.64 -1.33 16 5 O -0.57 -13.49 11.93 -132.60 -1.58 -15.08 16 6 C -0.16 -2.84 3.40 29.85 0.10 -2.74 16 7 C 0.51 12.11 7.18 87.66 0.63 12.74 16 8 O -0.57 -16.06 11.37 13.34 0.15 -15.91 16 9 N -0.61 -14.51 2.97 -818.14 -2.43 -16.94 16 10 C 0.11 2.47 6.37 86.51 0.55 3.02 16 11 C -0.12 -3.59 5.21 30.82 0.16 -3.43 16 12 C -0.07 -2.45 2.10 -10.77 -0.02 -2.47 16 13 C -0.01 -0.35 3.52 29.84 0.10 -0.24 16 14 C -0.51 -27.95 8.94 25.60 0.23 -27.72 16 15 H 0.04 2.57 7.30 -2.91 -0.02 2.54 16 16 C 0.01 0.32 5.47 84.65 0.46 0.79 16 17 N -0.95 -58.10 13.96 21.45 0.30 -57.80 16 18 Si 0.94 43.62 27.47 68.60 1.88 45.51 16 19 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 20 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 21 H -0.25 -10.96 6.54 99.48 0.65 -10.31 16 22 C -0.12 -3.51 5.36 30.66 0.16 -3.35 16 23 C 0.12 2.95 6.43 86.35 0.55 3.50 16 24 H 0.10 1.99 8.06 -2.91 -0.02 1.97 16 25 H 0.09 2.20 6.41 -2.91 -0.02 2.18 16 26 H 0.12 2.22 8.06 -2.91 -0.02 2.19 16 27 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.38 9.31 5.78 -74.05 -0.43 8.88 16 31 H 0.12 1.72 8.11 -2.39 -0.02 1.70 16 32 H 0.12 1.69 7.42 -2.39 -0.02 1.67 16 33 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.11 1.81 5.89 -2.38 -0.01 1.79 16 35 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.07 2.37 6.91 -2.39 -0.02 2.35 16 37 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.01 0.54 7.20 -2.38 -0.02 0.52 16 39 H 0.01 0.52 7.57 -2.39 -0.02 0.51 16 40 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 41 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.08 2.21 7.01 -2.39 -0.02 2.19 16 44 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 Total: -1.00 -65.92 339.68 3.42 -62.51 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: 0.49 Total: 22.36 kcal Atomic # 6 Polarization: -29.25 SS G_CDS: 4.61 Total: -24.65 kcal Atomic # 7 Polarization: -72.61 SS G_CDS: -2.13 Total: -74.74 kcal Atomic # 8 Polarization: -29.55 SS G_CDS: -1.43 Total: -30.98 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 1.88 Total: 45.51 kcal Total: -65.92 3.42 -62.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583501251.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.542 kcal (2) G-P(sol) polarization free energy of solvation -65.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds