Wall clock time and date at job start Tue Mar 31 2020 05:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50697 * 120.00346 * 2 1 4 4 C 1.52997 * 109.47466 * 239.99781 * 3 2 1 5 5 O 1.42906 * 109.46831 * 0.02562 * 3 2 1 6 6 C 1.53006 * 109.47239 * 119.99493 * 3 2 1 7 7 C 1.50701 * 109.47180 * 180.02562 * 6 3 2 8 8 O 1.21273 * 119.99897 * 359.97438 * 7 6 3 9 9 N 1.34776 * 119.99804 * 180.02562 * 7 6 3 10 10 C 1.46924 * 120.63280 * 359.71807 * 9 7 6 11 11 C 1.53626 * 108.54741 * 126.36668 * 10 9 7 12 12 C 1.53039 * 109.23631 * 54.85544 * 11 10 9 13 13 C 1.53000 * 109.46100 * 178.49064 * 12 11 10 14 14 C 1.50703 * 109.47177 * 295.07253 * 13 12 11 15 15 H 1.07995 * 119.99677 * 0.02562 * 14 13 12 16 16 C 1.37874 * 119.99904 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00021 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 119.99979 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47213 * 60.00122 * 18 16 14 20 20 H 1.48500 * 109.47506 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.47297 * 300.00283 * 18 16 14 22 22 C 1.53039 * 109.54348 * 298.51353 * 12 11 10 23 23 C 1.46921 * 120.62849 * 179.97438 * 9 7 6 24 24 H 1.07999 * 119.99739 * 0.02562 * 1 2 3 25 25 H 1.07999 * 119.99918 * 179.97438 * 1 2 3 26 26 H 1.08007 * 120.00185 * 179.97438 * 2 1 3 27 27 H 1.09002 * 109.47153 * 59.99773 * 4 3 2 28 28 H 1.09001 * 109.46832 * 299.99964 * 4 3 2 29 29 H 1.09004 * 109.47261 * 179.97438 * 4 3 2 30 30 H 0.96693 * 114.00047 * 60.00191 * 5 3 2 31 31 H 1.09000 * 109.47050 * 300.00336 * 6 3 2 32 32 H 1.09001 * 109.47002 * 60.00070 * 6 3 2 33 33 H 1.08998 * 109.58821 * 246.20823 * 10 9 7 34 34 H 1.09007 * 109.58393 * 6.62740 * 10 9 7 35 35 H 1.09004 * 109.63324 * 294.87361 * 11 10 9 36 36 H 1.08993 * 109.46089 * 174.74204 * 11 10 9 37 37 H 1.09002 * 109.44747 * 58.52594 * 12 11 10 38 38 H 1.09002 * 109.46793 * 55.07168 * 13 12 11 39 39 H 1.09003 * 109.47141 * 175.06610 * 13 12 11 40 40 H 0.97002 * 119.99966 * 179.97438 * 17 16 14 41 41 H 1.09000 * 109.49846 * 301.41365 * 22 12 11 42 42 H 1.08994 * 109.52973 * 181.33015 * 22 12 11 43 43 H 1.08999 * 109.58968 * 353.37148 * 23 9 7 44 44 H 1.09006 * 109.58455 * 113.65894 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.9432 1.3861 -1.2492 5 8 1.1349 2.3912 0.0006 6 6 2.9431 1.3861 1.2493 7 6 3.6962 2.6915 1.2497 8 8 3.5448 3.4791 0.3400 9 7 4.5388 2.9830 2.2603 10 6 4.7290 2.0412 3.3718 11 6 6.2318 1.7606 3.5229 12 6 6.9782 3.0863 3.6882 13 6 8.4713 2.8107 3.8768 14 6 8.6854 2.0667 5.1698 15 1 7.8410 1.8153 5.7943 16 6 9.9593 1.7062 5.5548 17 7 10.9875 2.0119 4.7940 18 14 10.2248 0.7847 7.1579 19 1 9.4844 -0.5020 7.1177 20 1 11.6739 0.5170 7.3409 21 1 9.7270 1.6070 8.2899 22 6 6.7725 3.9487 2.4407 23 6 5.2804 4.2513 2.2743 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8501 -0.9354 0.0004 27 1 2.3166 1.3283 -2.1392 28 1 3.6515 0.5575 -1.2491 29 1 3.4880 2.3303 -1.2494 30 1 0.5440 2.4030 0.7658 31 1 2.3164 1.3284 2.1393 32 1 3.6514 0.5576 1.2494 33 1 4.3418 2.4789 4.2920 34 1 4.2020 1.1114 3.1571 35 1 6.5990 1.2446 2.6357 36 1 6.3983 1.1373 4.4013 37 1 6.5931 3.6132 4.5613 38 1 8.8372 2.2076 3.0457 39 1 9.0143 3.7553 3.9068 40 1 11.8838 1.7585 5.0651 41 1 7.1347 3.4121 1.5638 42 1 7.3234 4.8829 2.5487 43 1 5.1175 4.7803 1.3353 44 1 4.9357 4.8669 3.1052 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583501252.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:17 Heat of formation + Delta-G solvation = -81.767507 kcal Electronic energy + Delta-G solvation = -22741.262186 eV Core-core repulsion = 19465.475182 eV Total energy + Delta-G solvation = -3275.787004 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.35923 -38.51373 -36.99708 -34.01390 -33.18489 -32.26150 -31.55754 -30.58208 -28.56047 -27.50124 -24.60462 -23.16914 -22.69763 -21.59603 -19.94077 -19.72025 -18.61158 -17.28658 -16.74669 -16.29721 -15.85161 -15.51912 -15.09015 -14.58247 -14.54742 -13.83452 -13.74286 -13.40113 -13.05367 -12.91729 -12.78045 -12.39931 -12.28435 -12.25638 -11.89029 -11.70254 -11.57159 -11.22111 -11.19875 -11.01171 -10.83241 -10.70619 -10.49075 -10.30613 -10.12346 -9.73904 -9.66564 -9.38489 -9.27315 -9.00100 -8.38267 -8.30334 -6.02497 -4.04910 1.93549 2.77878 3.16715 3.29448 3.35079 3.36199 4.09567 4.41467 4.42414 4.57363 4.80642 4.87831 4.99596 5.12253 5.32109 5.35964 5.40765 5.45679 5.49843 5.53475 5.56909 5.66469 5.74240 5.78928 5.94423 5.98845 6.06711 6.22381 6.32347 6.36879 6.38924 6.46722 6.52179 6.69331 6.94648 6.97111 7.08300 7.54752 7.60937 7.64063 7.78837 7.97067 8.37041 8.39136 9.01479 9.58969 11.08707 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.028126 B = 0.003482 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.268202 B = 8038.613001 C = 8545.626886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.184 4.184 3 C 0.177 3.823 4 C -0.147 4.147 5 O -0.538 6.538 6 C -0.165 4.165 7 C 0.514 3.486 8 O -0.529 6.529 9 N -0.608 5.608 10 C 0.103 3.897 11 C -0.119 4.119 12 C -0.081 4.081 13 C 0.028 3.972 14 C -0.518 4.518 15 H 0.055 0.945 16 C 0.057 3.943 17 N -0.895 5.895 18 Si 0.889 3.111 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C -0.129 4.129 23 C 0.113 3.887 24 H 0.104 0.896 25 H 0.099 0.901 26 H 0.116 0.884 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.095 0.905 30 H 0.367 0.633 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.058 0.942 36 H 0.084 0.916 37 H 0.058 0.942 38 H 0.015 0.985 39 H 0.016 0.984 40 H 0.261 0.739 41 H 0.060 0.940 42 H 0.069 0.931 43 H 0.085 0.915 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.511 -3.075 -6.523 19.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.203 4.203 3 C 0.135 3.865 4 C -0.204 4.204 5 O -0.343 6.343 6 C -0.205 4.205 7 C 0.302 3.698 8 O -0.406 6.406 9 N -0.342 5.342 10 C -0.020 4.020 11 C -0.157 4.157 12 C -0.099 4.099 13 C -0.009 4.009 14 C -0.556 4.556 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.535 5.535 18 Si 0.717 3.283 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.203 1.203 22 C -0.167 4.167 23 C -0.009 4.009 24 H 0.122 0.878 25 H 0.117 0.883 26 H 0.134 0.866 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.114 0.886 30 H 0.213 0.787 31 H 0.111 0.889 32 H 0.121 0.879 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.102 0.898 37 H 0.076 0.924 38 H 0.033 0.967 39 H 0.034 0.966 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.088 0.912 43 H 0.103 0.897 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -18.079 -2.523 -7.585 19.768 hybrid contribution 0.097 -0.939 1.662 1.911 sum -17.983 -3.462 -5.923 19.247 Atomic orbital electron populations 1.23851 0.96026 1.02309 0.99871 1.23652 0.96763 0.98917 1.00951 1.19872 0.87945 0.83894 0.94742 1.21940 0.98835 1.04520 0.95121 1.86725 1.50080 1.49021 1.48472 1.22415 1.00374 0.97484 1.00244 1.20339 0.79496 0.88245 0.81708 1.90643 1.64637 1.50204 1.35106 1.48208 1.43026 1.20155 1.22808 1.22024 0.98887 0.92151 0.88944 1.21974 0.91615 0.99251 1.02829 1.21186 0.99754 0.93805 0.95176 1.19119 0.88299 0.96770 0.96729 1.21198 0.92362 1.36215 1.05832 0.92664 1.25023 0.96310 0.96175 0.96942 1.69954 0.98828 1.47023 1.37645 0.86705 0.77041 0.80335 0.84174 1.20283 1.21358 1.20296 1.22013 0.93934 1.00910 0.99853 1.21627 0.92080 0.84837 1.02387 0.87771 0.88276 0.86583 0.92345 0.91816 0.88649 0.78656 0.88903 0.87935 0.91589 0.90626 0.92275 0.89775 0.92391 0.96664 0.96602 0.92963 0.92127 0.91199 0.89701 0.92037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.41 13.93 29.01 0.40 -1.01 16 2 C -0.18 -1.58 8.77 -36.03 -0.32 -1.90 16 3 C 0.18 1.89 0.94 -91.77 -0.09 1.81 16 4 C -0.15 -1.76 8.50 37.16 0.32 -1.44 16 5 O -0.54 -6.41 10.84 -53.50 -0.58 -6.99 16 6 C -0.16 -1.72 3.28 -27.88 -0.09 -1.81 16 7 C 0.51 7.27 7.26 -10.99 -0.08 7.19 16 8 O -0.53 -9.11 12.37 -12.70 -0.16 -9.26 16 9 N -0.61 -8.60 2.97 -172.53 -0.51 -9.12 16 10 C 0.10 1.32 6.37 -3.49 -0.02 1.30 16 11 C -0.12 -1.97 5.21 -26.39 -0.14 -2.10 16 12 C -0.08 -1.53 2.10 -90.58 -0.19 -1.72 16 13 C 0.03 0.68 4.45 -27.88 -0.12 0.56 16 14 C -0.52 -13.84 8.39 -34.44 -0.29 -14.13 16 15 H 0.06 1.41 7.05 -52.49 -0.37 1.04 16 16 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 17 N -0.90 -26.39 13.29 55.43 0.74 -25.65 16 18 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 C -0.13 -2.16 5.36 -26.63 -0.14 -2.30 16 23 C 0.11 1.68 6.43 -3.73 -0.02 1.66 16 24 H 0.10 0.78 6.41 -52.49 -0.34 0.44 16 25 H 0.10 0.63 8.06 -52.49 -0.42 0.20 16 26 H 0.12 0.87 8.06 -52.48 -0.42 0.44 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.09 1.41 5.51 -51.93 -0.29 1.12 16 30 H 0.37 3.06 8.05 45.56 0.37 3.43 16 31 H 0.09 0.79 7.93 -51.93 -0.41 0.38 16 32 H 0.10 0.95 7.70 -51.93 -0.40 0.55 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 0.78 5.93 -51.93 -0.31 0.47 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.08 1.48 6.91 -51.93 -0.36 1.12 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 42 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.08 1.31 7.01 -51.93 -0.36 0.95 16 44 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 345.12 15.07 5.20 5.20 Total: -1.00 -31.75 345.12 -7.89 -39.64 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -6.68 Total: 2.62 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: -0.88 Total: -12.41 kcal Atomic # 7 Polarization: -34.99 SS G_CDS: 0.22 Total: -34.76 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.74 Total: -16.25 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.75 -7.89 -39.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583501252.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.132 kcal (2) G-P(sol) polarization free energy of solvation -31.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds