Wall clock time and date at job start Tue Mar 31 2020 05:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50700 * 120.00459 * 2 1 4 4 H 1.09007 * 109.48596 * 359.97438 * 3 2 1 5 5 O 1.42895 * 109.48344 * 239.94544 * 3 2 1 6 6 C 1.42898 * 114.10136 * 178.86010 * 5 3 2 7 7 C 1.53091 * 109.41656 * 61.15172 * 6 5 3 8 8 C 1.53175 * 109.16412 * 302.39589 * 7 6 5 9 9 C 1.53088 * 109.47937 * 119.99859 * 3 2 1 10 10 H 1.09004 * 109.52520 * 57.62647 * 9 3 2 11 11 N 1.46498 * 109.52603 * 297.49833 * 9 3 2 12 12 C 1.34774 * 120.00211 * 154.99936 * 11 9 3 13 13 O 1.21281 * 119.99839 * 0.02562 * 12 11 9 14 14 C 1.50702 * 120.00110 * 180.02562 * 12 11 9 15 15 C 1.53001 * 109.47327 * 180.02562 * 14 12 11 16 16 C 1.52994 * 109.47367 * 179.97438 * 15 14 12 17 17 C 1.53001 * 109.47367 * 179.97438 * 16 15 14 18 18 C 1.50697 * 109.46995 * 180.02562 * 17 16 15 19 19 H 1.07991 * 120.00449 * 359.72153 * 18 17 16 20 20 C 1.37885 * 119.99686 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99913 * 359.72095 * 20 18 17 22 22 Si 1.86798 * 119.99766 * 179.72528 * 20 18 17 23 23 H 1.48490 * 109.47339 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47239 * 120.00108 * 22 20 18 25 25 H 1.48504 * 109.46636 * 239.99667 * 22 20 18 26 26 H 1.07997 * 120.00378 * 180.02562 * 1 2 3 27 27 H 1.08003 * 119.99808 * 359.97438 * 1 2 3 28 28 H 1.08003 * 119.99808 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.48366 * 181.13730 * 6 5 3 30 30 H 1.09004 * 109.47956 * 301.17522 * 6 5 3 31 31 H 1.09004 * 109.51869 * 62.30513 * 7 6 5 32 32 H 1.09000 * 109.52263 * 182.48776 * 7 6 5 33 33 H 1.08994 * 109.54305 * 297.10890 * 8 7 6 34 34 H 1.09006 * 109.54285 * 176.84126 * 8 7 6 35 35 H 0.97004 * 119.99747 * 335.00585 * 11 9 3 36 36 H 1.08998 * 109.47519 * 59.99858 * 14 12 11 37 37 H 1.09001 * 109.46880 * 299.99851 * 14 12 11 38 38 H 1.08998 * 109.47065 * 59.99424 * 15 14 12 39 39 H 1.09001 * 109.46892 * 299.99688 * 15 14 12 40 40 H 1.08998 * 109.47353 * 59.99778 * 16 15 14 41 41 H 1.09006 * 109.47395 * 300.00034 * 16 15 14 42 42 H 1.08998 * 109.47065 * 59.99602 * 17 16 15 43 43 H 1.09001 * 109.46892 * 299.99866 * 17 16 15 44 44 H 0.97000 * 119.99651 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 1 1.3555 2.1338 -0.0005 5 8 2.8862 1.3804 -1.1660 6 6 3.6288 2.5960 -1.2787 7 6 4.5719 2.7292 -0.0801 8 6 3.7512 2.6875 1.2126 9 6 2.9438 1.3863 1.2499 10 1 3.6241 0.5349 1.2724 11 7 2.0983 1.3690 2.4462 12 6 2.5988 0.9327 3.6190 13 8 3.7494 0.5548 3.6841 14 6 1.7289 0.9145 4.8494 15 6 2.5340 0.3798 6.0355 16 6 1.6510 0.3618 7.2847 17 6 2.4560 -0.1735 8.4707 18 6 1.5860 -0.1917 9.7010 19 1 0.5628 0.1490 9.6440 20 6 2.0980 -0.6386 10.9008 21 7 3.3439 -1.0540 10.9701 22 14 1.0219 -0.6540 12.4276 23 1 -0.3289 -0.1403 12.0863 24 1 0.9088 -2.0433 12.9395 25 1 1.6306 0.2100 13.4708 26 1 -0.5400 -0.9352 0.0004 27 1 -0.5400 0.9354 0.0004 28 1 1.8500 -0.9354 -0.0004 29 1 4.2114 2.5821 -2.1998 30 1 2.9413 3.4417 -1.2958 31 1 5.2859 1.9055 -0.0851 32 1 5.1072 3.6767 -0.1413 33 1 3.0718 3.5392 1.2407 34 1 4.4215 2.7254 2.0714 35 1 1.1781 1.6716 2.3941 36 1 0.8667 0.2707 4.6753 37 1 1.3883 1.9264 5.0686 38 1 3.3960 1.0239 6.2094 39 1 2.8749 -0.6321 5.8165 40 1 0.7888 -0.2820 7.1111 41 1 1.3104 1.3739 7.5036 42 1 3.3184 0.4700 8.6445 43 1 2.7962 -1.1856 8.2516 44 1 3.7039 -1.3687 11.8141 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590874457.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:53 Heat of formation + Delta-G solvation = -94.867031 kcal Electronic energy + Delta-G solvation = -21715.079821 eV Core-core repulsion = 18438.724779 eV Total energy + Delta-G solvation = -3276.355042 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.53026 -39.06146 -35.50513 -34.81615 -34.42110 -32.78691 -32.45392 -30.19712 -29.04867 -25.74363 -25.36794 -23.75648 -22.17741 -20.86941 -20.48456 -20.11570 -19.93588 -17.26688 -17.04255 -16.39810 -16.11278 -15.75576 -15.66164 -14.90361 -14.61822 -14.43801 -14.34504 -13.96335 -13.69756 -13.40326 -12.92522 -12.60363 -12.33812 -12.11708 -11.84577 -11.68345 -11.58607 -11.46114 -11.30470 -10.99843 -10.98011 -10.52427 -10.47540 -10.39813 -10.17303 -9.84849 -9.69838 -9.59790 -9.20859 -9.13110 -8.95602 -8.29781 -5.94398 -3.96777 1.76898 2.72944 2.96533 3.33674 3.40816 3.44790 3.57901 4.27996 4.40767 4.49624 4.50714 4.55270 4.61047 4.75782 4.91347 4.97065 5.11141 5.20219 5.33486 5.37718 5.38995 5.41210 5.45041 5.54222 5.60082 5.80605 5.85783 5.93283 6.15551 6.19789 6.25672 6.29734 6.32846 6.56305 6.78501 6.85705 7.03739 7.21545 7.42117 7.75670 7.91556 8.07341 8.27183 8.49163 9.11274 9.66845 11.17007 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.034979 B = 0.002539 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.276992 B =11024.515245 C =11514.225666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.144 4.144 3 C 0.115 3.885 4 H 0.065 0.935 5 O -0.369 6.369 6 C 0.058 3.942 7 C -0.154 4.154 8 C -0.135 4.135 9 C 0.121 3.879 10 H 0.097 0.903 11 N -0.729 5.729 12 C 0.515 3.485 13 O -0.533 6.533 14 C -0.138 4.138 15 C -0.103 4.103 16 C -0.110 4.110 17 C 0.019 3.981 18 C -0.519 4.519 19 H 0.055 0.945 20 C 0.054 3.946 21 N -0.895 5.895 22 Si 0.891 3.109 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 H 0.106 0.894 27 H 0.098 0.902 28 H 0.117 0.883 29 H 0.098 0.902 30 H 0.052 0.948 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.398 0.602 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.015 0.985 43 H 0.016 0.984 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.128 8.422 -26.882 28.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C 0.057 3.943 4 H 0.083 0.917 5 O -0.287 6.287 6 C -0.019 4.019 7 C -0.193 4.193 8 C -0.173 4.173 9 C 0.015 3.985 10 H 0.115 0.885 11 N -0.383 5.383 12 C 0.302 3.698 13 O -0.408 6.408 14 C -0.178 4.178 15 C -0.141 4.141 16 C -0.148 4.148 17 C -0.018 4.018 18 C -0.557 4.557 19 H 0.073 0.927 20 C -0.146 4.146 21 N -0.535 5.535 22 Si 0.719 3.281 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.211 1.211 26 H 0.125 0.875 27 H 0.116 0.884 28 H 0.135 0.865 29 H 0.116 0.884 30 H 0.070 0.930 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.232 0.768 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.140 7.920 -26.851 28.170 hybrid contribution -0.922 0.368 1.079 1.466 sum -4.062 8.288 -25.772 27.375 Atomic orbital electron populations 1.23902 0.95458 1.02413 0.99036 1.22636 0.95614 0.97400 1.00596 1.21335 0.91320 0.96366 0.85264 0.91706 1.88014 1.60047 1.39202 1.41442 1.22664 0.93702 0.86781 0.98711 1.22201 0.99026 1.03403 0.94626 1.22032 0.99373 0.97260 0.98665 1.21471 0.93108 0.99521 0.84366 0.88494 1.45990 1.15609 1.67944 1.08766 1.21101 0.88482 0.75730 0.84445 1.90707 1.18533 1.46407 1.85194 1.21795 0.99313 1.03673 0.93039 1.21449 0.98356 1.01514 0.92794 1.21647 0.98203 1.00186 0.94732 1.19101 0.95184 0.96306 0.91187 1.21323 0.98081 1.42293 0.94044 0.92711 1.25051 0.95011 0.95546 0.99027 1.69989 1.13933 1.43700 1.25864 0.86555 0.80689 0.77608 0.83257 1.19786 1.21048 1.21062 0.87547 0.88394 0.86531 0.88415 0.93018 0.90570 0.90381 0.91618 0.90362 0.76791 0.89119 0.89188 0.91848 0.91805 0.93480 0.93512 0.96622 0.96568 0.93106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.15 14.32 29.01 0.42 -0.74 16 2 C -0.14 -1.21 8.82 -36.03 -0.32 -1.53 16 3 C 0.12 0.98 2.58 -27.84 -0.07 0.90 16 4 H 0.07 0.46 7.79 -51.93 -0.40 0.05 16 5 O -0.37 -3.49 10.39 -35.23 -0.37 -3.86 16 6 C 0.06 0.40 6.84 37.20 0.25 0.66 16 7 C -0.15 -1.15 6.14 -26.59 -0.16 -1.31 16 8 C -0.13 -1.23 5.61 -26.55 -0.15 -1.37 16 9 C 0.12 1.20 2.06 -67.79 -0.14 1.06 16 10 H 0.10 1.23 7.58 -51.93 -0.39 0.83 16 11 N -0.73 -7.25 4.73 -53.67 -0.25 -7.51 16 12 C 0.51 7.08 7.80 -10.99 -0.09 7.00 16 13 O -0.53 -9.65 15.64 5.56 0.09 -9.56 16 14 C -0.14 -1.82 5.70 -27.88 -0.16 -1.98 16 15 C -0.10 -1.86 4.50 -26.73 -0.12 -1.98 16 16 C -0.11 -2.28 5.15 -26.73 -0.14 -2.42 16 17 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 18 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 16 19 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 20 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 21 N -0.90 -27.70 13.29 55.43 0.74 -26.96 16 22 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 23 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 26 H 0.11 0.64 8.06 -52.49 -0.42 0.21 16 27 H 0.10 0.53 7.83 -52.48 -0.41 0.12 16 28 H 0.12 1.06 8.06 -52.48 -0.42 0.63 16 29 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.40 2.86 8.61 -40.82 -0.35 2.50 16 36 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 39 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 40 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 361.84 15.07 5.45 5.45 Total: -1.00 -34.08 361.84 -8.45 -42.53 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -7.86 Total: -1.87 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: -1.22 Total: -15.20 kcal Atomic # 7 Polarization: -34.95 SS G_CDS: 0.48 Total: -34.47 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: -0.28 Total: -13.42 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.08 -8.45 -42.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590874457.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.336 kcal (2) G-P(sol) polarization free energy of solvation -34.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds