Wall clock time and date at job start Tue Mar 31 2020 06:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.86880 * 2 1 4 4 C 1.54474 * 109.87968 * 238.99518 * 2 1 3 5 5 C 1.54309 * 102.86052 * 218.99081 * 4 2 1 6 6 C 1.54036 * 102.57390 * 34.55321 * 5 4 2 7 7 N 1.47085 * 110.00133 * 121.08386 * 2 1 3 8 8 C 1.34781 * 125.62275 * 298.47871 * 7 2 1 9 9 O 1.21277 * 120.00253 * 0.02562 * 8 7 2 10 10 C 1.50705 * 119.99679 * 179.97438 * 8 7 2 11 11 C 1.53001 * 109.46816 * 180.02562 * 10 8 7 12 12 C 1.50694 * 109.47120 * 180.02562 * 11 10 8 13 13 H 1.07995 * 120.00149 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00204 * 179.97438 * 12 11 10 15 15 N 1.31520 * 120.00003 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00256 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47278 * 90.00181 * 16 14 12 18 18 H 1.48502 * 109.47043 * 210.00024 * 16 14 12 19 19 H 1.48504 * 109.47051 * 329.99973 * 16 14 12 20 20 C 1.52185 * 110.60964 * 276.35792 * 5 4 2 21 21 C 1.53277 * 109.24105 * 291.50296 * 20 5 4 22 22 O 1.42917 * 109.29474 * 303.87470 * 21 20 5 23 23 C 1.42915 * 114.27456 * 61.84882 * 22 21 20 24 24 C 1.52186 * 110.60585 * 152.75989 * 5 4 2 25 25 H 1.09000 * 109.47035 * 181.00095 * 1 2 3 26 26 H 1.08996 * 109.47148 * 301.00245 * 1 2 3 27 27 H 1.09003 * 109.46777 * 61.00448 * 1 2 3 28 28 H 1.08996 * 110.73449 * 100.64487 * 4 2 1 29 29 H 1.09003 * 110.89066 * 337.40248 * 4 2 1 30 30 H 1.09004 * 110.37679 * 82.85050 * 6 5 4 31 31 H 1.09002 * 110.37709 * 205.20037 * 6 5 4 32 32 H 1.08995 * 109.47242 * 299.99615 * 10 8 7 33 33 H 1.08994 * 109.47017 * 60.00196 * 10 8 7 34 34 H 1.09003 * 109.47159 * 299.99894 * 11 10 8 35 35 H 1.08999 * 109.47363 * 59.99512 * 11 10 8 36 36 H 0.97001 * 119.99977 * 179.97438 * 15 14 12 37 37 H 1.08994 * 109.51089 * 51.43283 * 20 5 4 38 38 H 1.09001 * 109.51088 * 171.57721 * 20 5 4 39 39 H 1.09003 * 109.49866 * 183.92985 * 21 20 5 40 40 H 1.09006 * 109.49861 * 63.82465 * 21 20 5 41 41 H 1.09004 * 109.50464 * 178.20977 * 23 22 21 42 42 H 1.08998 * 109.53692 * 58.11422 * 23 22 21 43 43 H 1.09002 * 109.50860 * 188.42313 * 24 5 4 44 44 H 1.09004 * 109.50619 * 308.51280 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 6 2.0553 -0.7483 -1.2451 5 6 3.2717 -1.5212 -0.6936 6 6 2.8224 -1.8775 0.7361 7 7 2.0331 -0.7136 1.1837 8 6 1.8107 -0.3620 2.4657 9 8 1.1441 0.6192 2.7185 10 6 2.3894 -1.1887 3.5850 11 6 1.9901 -0.5774 4.9295 12 6 2.5692 -1.4037 6.0488 13 1 3.1624 -2.2776 5.8237 14 6 2.3419 -1.0439 7.3602 15 7 1.6199 0.0206 7.6344 16 14 3.0592 -2.0686 8.7477 17 1 4.4061 -1.5516 9.0996 18 1 2.1711 -1.9851 9.9349 19 1 3.1706 -3.4837 8.3114 20 6 4.5050 -0.6300 -0.6660 21 6 4.9434 -0.3296 -2.1037 22 8 5.1639 -1.5598 -2.7969 23 6 4.0032 -2.3857 -2.9119 24 6 3.5219 -2.7801 -1.5112 25 1 -0.3633 -1.0275 0.0180 26 1 -0.3633 0.5293 0.8808 27 1 -0.3633 0.4982 -0.8989 28 1 2.3636 -0.0436 -2.0173 29 1 1.3033 -1.4367 -1.6309 30 1 2.2037 -2.7749 0.7269 31 1 3.6890 -2.0195 1.3819 32 1 2.0054 -2.2067 3.5208 33 1 3.4760 -1.2042 3.5009 34 1 2.3737 0.4408 4.9940 35 1 0.9034 -0.5621 5.0133 36 1 1.4596 0.2735 8.5570 37 1 4.2684 0.3033 -0.1551 38 1 5.3111 -1.1402 -0.1388 39 1 5.8662 0.2503 -2.0890 40 1 4.1637 0.2390 -2.6106 41 1 4.2502 -3.2838 -3.4781 42 1 3.2147 -1.8366 -3.4264 43 1 4.2840 -3.3865 -1.0217 44 1 2.5974 -3.3521 -1.5909 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592720768.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:47 Heat of formation + Delta-G solvation = -101.607219 kcal Electronic energy + Delta-G solvation = -23053.857973 eV Core-core repulsion = 19777.210654 eV Total energy + Delta-G solvation = -3276.647318 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.96187 -38.95175 -37.07784 -33.60949 -33.37294 -32.02489 -31.46726 -30.51906 -27.96467 -26.25441 -25.67258 -24.00275 -23.06933 -22.42912 -20.64084 -18.96571 -18.44454 -17.02013 -16.46996 -16.33044 -16.06307 -15.61851 -15.03978 -14.74289 -14.51814 -14.41807 -14.28317 -13.54709 -13.32691 -12.93920 -12.86308 -12.52475 -12.45456 -12.24200 -12.08999 -11.80706 -11.57970 -11.41004 -11.29451 -11.07094 -10.92676 -10.91009 -10.69406 -10.58714 -10.35708 -9.94231 -9.74778 -9.60939 -9.14648 -8.96268 -8.38555 -8.29934 -5.95372 -3.99769 3.24842 3.27565 3.33672 3.39878 3.42621 3.61160 4.11926 4.27021 4.39435 4.48075 4.72073 4.80388 4.84387 4.92397 5.03630 5.14156 5.26870 5.33694 5.35997 5.37871 5.39533 5.46963 5.50782 5.56454 5.66375 5.68534 5.70795 5.71746 5.83860 5.99793 6.00484 6.15144 6.22447 6.25350 6.35815 6.65617 6.91815 6.92630 7.75106 7.87104 7.89390 8.07996 8.39486 8.78152 9.08693 9.63706 11.15593 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.024481 B = 0.003788 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.479766 B = 7390.472036 C = 8050.077355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.135 3.865 3 H 0.070 0.930 4 C -0.121 4.121 5 C -0.073 4.073 6 C 0.115 3.885 7 N -0.625 5.625 8 C 0.527 3.473 9 O -0.531 6.531 10 C -0.125 4.125 11 C 0.037 3.963 12 C -0.526 4.526 13 H 0.055 0.945 14 C 0.058 3.942 15 N -0.890 5.890 16 Si 0.892 3.108 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.274 1.274 20 C -0.141 4.141 21 C 0.062 3.938 22 O -0.384 6.384 23 C 0.063 3.937 24 C -0.139 4.139 25 H 0.054 0.946 26 H 0.072 0.928 27 H 0.058 0.942 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.023 0.977 35 H 0.023 0.977 36 H 0.261 0.739 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.094 0.906 40 H 0.051 0.949 41 H 0.093 0.907 42 H 0.050 0.950 43 H 0.077 0.923 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.945 -4.623 -23.571 24.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.032 3.968 3 H 0.088 0.912 4 C -0.159 4.159 5 C -0.073 4.073 6 C -0.009 4.009 7 N -0.363 5.363 8 C 0.318 3.682 9 O -0.406 6.406 10 C -0.164 4.164 11 C 0.000 4.000 12 C -0.565 4.565 13 H 0.073 0.927 14 C -0.144 4.144 15 N -0.528 5.528 16 Si 0.720 3.280 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.178 4.178 21 C -0.015 4.015 22 O -0.303 6.303 23 C -0.014 4.014 24 C -0.177 4.177 25 H 0.073 0.927 26 H 0.091 0.909 27 H 0.077 0.923 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.041 0.959 35 H 0.041 0.959 36 H 0.070 0.930 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.112 0.888 40 H 0.069 0.931 41 H 0.111 0.889 42 H 0.069 0.931 43 H 0.095 0.905 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.656 -3.994 -23.236 23.859 hybrid contribution 0.063 -0.495 0.972 1.093 sum 3.719 -4.490 -22.265 23.015 Atomic orbital electron populations 1.22127 0.95020 1.02116 1.02718 1.21451 0.94479 0.96218 0.84664 0.91221 1.22812 0.96895 0.99342 0.96850 1.21084 0.95213 0.95774 0.95277 1.22186 0.95597 0.89220 0.93885 1.48844 1.53571 1.28682 1.05156 1.21288 0.79698 0.85466 0.81785 1.90657 1.39261 1.27814 1.82882 1.21851 1.00579 0.99036 0.94968 1.18901 0.97531 0.96202 0.87378 1.21212 1.32751 1.11450 0.91062 0.92651 1.25022 0.95254 0.95192 0.98884 1.70003 1.38729 1.24987 1.19122 0.86596 0.78949 0.80590 0.81842 1.20664 1.21213 1.19885 1.22015 0.97148 1.00779 0.97876 1.22655 1.01471 0.86075 0.91304 1.87917 1.34177 1.31490 1.76686 1.22593 0.88240 0.94777 0.95819 1.22012 1.02510 0.96816 0.96403 0.92723 0.90912 0.92289 0.90369 0.90324 0.91447 0.90185 0.90455 0.90459 0.95861 0.95852 0.92962 0.90327 0.90502 0.88794 0.93088 0.88895 0.93140 0.90477 0.90415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 9.10 37.16 0.34 -1.74 16 2 C 0.14 1.71 3.06 -66.84 -0.20 1.50 16 3 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 4 C -0.12 -1.08 4.61 -25.27 -0.12 -1.19 16 5 C -0.07 -0.66 0.54 -154.11 -0.08 -0.74 16 6 C 0.11 1.31 5.60 -2.91 -0.02 1.29 16 7 N -0.63 -9.35 3.07 -163.29 -0.50 -9.85 16 8 C 0.53 10.51 7.64 -10.98 -0.08 10.43 16 9 O -0.53 -12.73 15.03 5.56 0.08 -12.65 16 10 C -0.12 -2.61 4.66 -27.88 -0.13 -2.74 16 11 C 0.04 1.02 4.26 -27.89 -0.12 0.90 16 12 C -0.53 -15.09 9.11 -34.44 -0.31 -15.40 16 13 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 14 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 15 N -0.89 -27.64 13.29 55.43 0.74 -26.90 16 16 Si 0.89 21.80 29.54 -169.99 -5.02 16.77 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 20 C -0.14 -1.31 4.89 -27.00 -0.13 -1.44 16 21 C 0.06 0.51 6.66 37.30 0.25 0.76 16 22 O -0.38 -3.68 10.74 -35.23 -0.38 -4.06 16 23 C 0.06 0.45 6.68 37.30 0.25 0.70 16 24 C -0.14 -1.03 4.89 -27.01 -0.13 -1.16 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.07 1.18 6.90 -51.93 -0.36 0.82 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.08 0.61 6.39 -51.93 -0.33 0.27 16 29 H 0.08 0.63 7.63 -51.93 -0.40 0.23 16 30 H 0.07 0.72 8.01 -51.93 -0.42 0.30 16 31 H 0.08 0.92 7.39 -51.93 -0.38 0.54 16 32 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 33 H 0.08 1.49 7.85 -51.93 -0.41 1.08 16 34 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 35 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 36 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 37 H 0.08 0.82 7.78 -51.93 -0.40 0.42 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.05 0.38 6.63 -51.93 -0.34 0.04 16 41 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 43 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.08 0.49 8.02 -51.93 -0.42 0.08 16 LS Contribution 341.81 15.07 5.15 5.15 Total: -1.00 -34.00 341.81 -8.14 -42.14 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -7.62 Total: -3.40 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: -0.59 Total: -7.21 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: 0.24 Total: -36.75 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -0.29 Total: -16.71 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.00 -8.14 -42.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592720768.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.463 kcal (2) G-P(sol) polarization free energy of solvation -34.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds