Wall clock time and date at job start Tue Mar 31 2020 06:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.87309 * 2 1 4 4 C 1.54467 * 109.88138 * 121.00856 * 2 1 3 5 5 C 1.54311 * 102.86231 * 97.98611 * 4 2 1 6 6 C 1.54052 * 102.57088 * 34.55868 * 5 4 2 7 7 N 1.47088 * 109.87740 * 238.84863 * 2 1 3 8 8 C 1.34778 * 125.62949 * 59.61081 * 7 2 1 9 9 O 1.21288 * 119.99477 * 0.02562 * 8 7 2 10 10 C 1.50699 * 120.00374 * 180.02562 * 8 7 2 11 11 C 1.52997 * 109.46923 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.46963 * 180.02562 * 11 10 8 13 13 H 1.07998 * 120.00141 * 359.97438 * 12 11 10 14 14 C 1.37878 * 119.99957 * 180.02562 * 12 11 10 15 15 N 1.31518 * 120.00321 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 120.00105 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46990 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47017 * 120.00047 * 16 14 12 19 19 H 1.48499 * 109.47367 * 240.00107 * 16 14 12 20 20 C 1.52178 * 110.61664 * 152.75071 * 5 4 2 21 21 C 1.53269 * 109.25840 * 68.55436 * 20 5 4 22 22 O 1.42918 * 109.29203 * 56.11576 * 21 20 5 23 23 C 1.42924 * 114.26410 * 298.14716 * 22 21 20 24 24 C 1.52185 * 110.61750 * 276.37317 * 5 4 2 25 25 H 1.09001 * 109.47193 * 291.80333 * 1 2 3 26 26 H 1.08993 * 109.47580 * 51.80283 * 1 2 3 27 27 H 1.08998 * 109.47239 * 171.80637 * 1 2 3 28 28 H 1.09003 * 110.73763 * 339.64642 * 4 2 1 29 29 H 1.08998 * 110.73698 * 216.32993 * 4 2 1 30 30 H 1.09005 * 110.37480 * 82.83904 * 6 5 4 31 31 H 1.08998 * 110.37688 * 205.19088 * 6 5 4 32 32 H 1.08995 * 109.47370 * 300.00233 * 10 8 7 33 33 H 1.09001 * 109.46697 * 60.01059 * 10 8 7 34 34 H 1.09000 * 109.47441 * 300.00444 * 11 10 8 35 35 H 1.09000 * 109.47350 * 60.00338 * 11 10 8 36 36 H 0.96998 * 120.00300 * 180.02562 * 15 14 12 37 37 H 1.08997 * 109.51172 * 308.61234 * 20 5 4 38 38 H 1.09006 * 109.50543 * 188.48266 * 20 5 4 39 39 H 1.09004 * 109.49823 * 296.17043 * 21 20 5 40 40 H 1.09001 * 109.50201 * 176.06603 * 21 20 5 41 41 H 1.08997 * 109.50048 * 181.80832 * 23 22 21 42 42 H 1.09002 * 109.49829 * 301.91592 * 23 22 21 43 43 H 1.08998 * 109.50794 * 51.38598 * 24 5 4 44 44 H 1.09007 * 109.50606 * 171.47235 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0552 -0.7483 1.2450 5 6 2.3686 -2.1550 0.6935 6 6 2.8565 -1.8536 -0.7363 7 7 2.0301 -0.7156 -1.1838 8 6 1.7759 -0.3863 -2.4658 9 8 1.0805 0.5748 -2.7185 10 6 2.3556 -1.2121 -3.5851 11 6 1.9177 -0.6278 -4.9296 12 6 2.4969 -1.4540 -6.0489 13 1 3.1158 -2.3100 -5.8239 14 6 2.2376 -1.1165 -7.3603 15 7 1.4851 -0.0732 -7.6345 16 14 2.9561 -2.1402 -8.7479 17 1 3.7610 -3.2505 -8.1783 18 1 1.8546 -2.6999 -9.5717 19 1 3.8234 -1.2843 -9.5967 20 6 3.4678 -2.8184 1.5106 21 6 2.9333 -3.1386 2.9110 22 8 1.7624 -3.9498 2.7954 23 6 0.6801 -3.3236 2.1030 24 6 1.1113 -3.0120 0.6656 25 1 -0.3633 0.3817 0.9542 26 1 -0.3634 0.6354 -0.8076 27 1 -0.3633 -1.0171 -0.1465 28 1 1.2877 -0.7989 2.0173 29 1 2.9588 -0.2738 1.6278 30 1 3.9107 -1.5765 -0.7271 31 1 2.6956 -2.7167 -1.3821 32 1 3.4435 -1.1988 -3.5206 33 1 1.9990 -2.2388 -3.5014 34 1 0.8297 -0.6407 -4.9943 35 1 2.2744 0.3988 -5.0131 36 1 1.3024 0.1640 -8.5571 37 1 4.3193 -2.1428 1.5916 38 1 3.7795 -3.7407 1.0204 39 1 2.6840 -2.2109 3.4262 40 1 3.6942 -3.6763 3.4766 41 1 -0.1788 -3.9945 2.0879 42 1 0.4105 -2.3976 2.6108 43 1 0.3139 -2.4719 0.1553 44 1 1.3169 -3.9428 0.1367 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592720770.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:49 Heat of formation + Delta-G solvation = -97.991156 kcal Electronic energy + Delta-G solvation = -23164.286754 eV Core-core repulsion = 19887.796240 eV Total energy + Delta-G solvation = -3276.490514 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.03479 -38.92875 -37.09039 -33.55419 -33.32390 -32.10935 -31.38687 -30.51398 -28.10305 -26.25594 -25.65311 -23.94728 -23.08114 -22.42647 -20.68343 -18.97965 -18.47036 -17.04721 -16.48700 -16.31200 -15.91857 -15.63190 -15.08832 -14.92574 -14.49907 -14.40870 -14.02556 -13.52309 -13.37831 -13.11844 -12.97961 -12.72843 -12.22481 -12.16963 -12.02809 -11.81465 -11.57428 -11.50424 -11.18443 -11.06790 -10.96627 -10.90795 -10.67244 -10.57018 -10.23449 -9.94762 -9.73402 -9.60649 -9.13682 -8.96085 -8.38860 -8.30374 -5.95656 -3.99950 3.24947 3.26993 3.32751 3.40026 3.43418 3.61627 4.12787 4.28640 4.39216 4.48006 4.72388 4.79576 4.85257 4.92872 5.05595 5.14061 5.19113 5.34904 5.35636 5.38964 5.39409 5.44507 5.53127 5.58552 5.63748 5.67456 5.69965 5.76487 5.83795 5.98547 6.03110 6.14971 6.23246 6.25885 6.40197 6.65891 6.91705 6.93457 7.75293 7.86946 7.89359 8.07781 8.39342 8.78195 9.08725 9.63595 11.15340 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.026289 B = 0.003771 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.834763 B = 7422.552292 C = 7989.852423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.135 3.865 3 H 0.070 0.930 4 C -0.122 4.122 5 C -0.071 4.071 6 C 0.114 3.886 7 N -0.625 5.625 8 C 0.526 3.474 9 O -0.531 6.531 10 C -0.124 4.124 11 C 0.037 3.963 12 C -0.526 4.526 13 H 0.056 0.944 14 C 0.058 3.942 15 N -0.890 5.890 16 Si 0.892 3.108 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.140 4.140 21 C 0.063 3.937 22 O -0.384 6.384 23 C 0.062 3.938 24 C -0.147 4.147 25 H 0.057 0.943 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.023 0.977 35 H 0.023 0.977 36 H 0.260 0.740 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.050 0.950 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.051 0.949 43 H 0.085 0.915 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.305 -5.726 23.561 24.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.031 3.969 3 H 0.088 0.912 4 C -0.160 4.160 5 C -0.072 4.072 6 C -0.010 4.010 7 N -0.363 5.363 8 C 0.317 3.683 9 O -0.406 6.406 10 C -0.164 4.164 11 C 0.000 4.000 12 C -0.564 4.564 13 H 0.074 0.926 14 C -0.144 4.144 15 N -0.528 5.528 16 Si 0.720 3.280 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.178 4.178 21 C -0.014 4.014 22 O -0.303 6.303 23 C -0.015 4.015 24 C -0.185 4.185 25 H 0.076 0.924 26 H 0.091 0.909 27 H 0.078 0.922 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.041 0.959 35 H 0.041 0.959 36 H 0.070 0.930 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.068 0.932 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.069 0.931 43 H 0.103 0.897 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.817 -5.244 23.229 23.883 hybrid contribution 0.465 -0.216 -0.977 1.103 sum 2.282 -5.460 22.252 23.026 Atomic orbital electron populations 1.22280 0.95058 1.02676 1.02275 1.21440 0.94597 0.96141 0.84684 0.91192 1.22807 1.01690 0.94569 0.96929 1.21061 0.95864 0.95053 0.95208 1.22207 0.94905 0.89917 0.93922 1.48850 1.51975 1.30307 1.05126 1.21291 0.79932 0.85244 0.81784 1.90661 1.38178 1.28854 1.82886 1.21849 1.00692 0.98925 0.94961 1.18907 0.97375 0.96372 0.87391 1.21251 1.31340 1.12768 0.91045 0.92594 1.25025 0.95248 0.95201 0.98897 1.70010 1.37617 1.26182 1.19028 0.86543 0.78914 0.80250 0.82305 1.19746 1.21009 1.21009 1.22014 0.97662 1.01674 0.96425 1.22592 0.87699 0.95307 0.95819 1.87918 1.23216 1.42409 1.76748 1.22643 0.89525 0.97946 0.91340 1.22172 0.97840 1.00476 0.97979 0.92365 0.90950 0.92175 0.90113 0.90555 0.91395 0.90215 0.90456 0.90454 0.95854 0.95851 0.93016 0.90424 0.90490 0.93156 0.88911 0.88855 0.93089 0.89652 0.90605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.08 8.80 37.15 0.33 -1.75 16 2 C 0.13 1.70 3.38 -66.84 -0.23 1.47 16 3 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 4 C -0.12 -1.09 4.66 -25.27 -0.12 -1.20 16 5 C -0.07 -0.64 0.54 -154.11 -0.08 -0.73 16 6 C 0.11 1.30 5.60 -2.90 -0.02 1.29 16 7 N -0.63 -9.34 3.08 -163.28 -0.50 -9.84 16 8 C 0.53 10.49 7.63 -10.99 -0.08 10.41 16 9 O -0.53 -12.70 15.03 5.55 0.08 -12.62 16 10 C -0.12 -2.60 4.65 -27.89 -0.13 -2.73 16 11 C 0.04 1.01 4.26 -27.88 -0.12 0.89 16 12 C -0.53 -15.06 9.11 -34.44 -0.31 -15.37 16 13 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 14 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 15 N -0.89 -27.62 13.29 55.43 0.74 -26.88 16 16 Si 0.89 21.79 29.54 -169.99 -5.02 16.76 16 17 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 20 C -0.14 -1.04 4.89 -27.01 -0.13 -1.17 16 21 C 0.06 0.46 6.68 37.30 0.25 0.71 16 22 O -0.38 -3.70 10.74 -35.23 -0.38 -4.08 16 23 C 0.06 0.52 6.67 37.30 0.25 0.77 16 24 C -0.15 -1.37 4.88 -27.01 -0.13 -1.50 16 25 H 0.06 0.58 8.03 -51.93 -0.42 0.16 16 26 H 0.07 1.15 7.03 -51.93 -0.37 0.78 16 27 H 0.06 0.74 5.47 -51.93 -0.28 0.46 16 28 H 0.08 0.63 6.00 -51.93 -0.31 0.32 16 29 H 0.08 0.60 7.92 -51.93 -0.41 0.19 16 30 H 0.07 0.72 8.01 -51.93 -0.42 0.30 16 31 H 0.08 0.92 7.40 -51.93 -0.38 0.54 16 32 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 33 H 0.08 1.49 7.86 -51.93 -0.41 1.09 16 34 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 35 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 36 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 37 H 0.08 0.49 8.02 -51.93 -0.42 0.08 16 38 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 40 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.05 0.38 6.63 -51.93 -0.34 0.04 16 43 H 0.09 0.89 5.06 -51.93 -0.26 0.63 16 44 H 0.08 0.74 8.14 -51.92 -0.42 0.32 16 LS Contribution 336.40 15.07 5.07 5.07 Total: -1.00 -34.00 336.40 -7.98 -41.98 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -7.34 Total: -3.07 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: -0.63 Total: -7.33 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: 0.23 Total: -36.72 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -0.30 Total: -16.69 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.00 -7.98 -41.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592720770.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.012 kcal (2) G-P(sol) polarization free energy of solvation -34.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds