Wall clock time and date at job start Tue Mar 31 2020 06:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 110.54459 * 2 1 4 4 C 1.54273 * 110.48270 * 237.38563 * 2 1 3 5 5 C 1.53869 * 106.59806 * 217.71321 * 4 2 1 6 6 C 1.54266 * 106.60137 * 0.02562 * 5 4 2 7 7 H 1.09002 * 110.48845 * 264.93389 * 6 5 4 8 8 C 1.53002 * 110.59787 * 142.34152 * 6 5 4 9 9 C 1.50709 * 109.46884 * 68.32474 * 8 6 5 10 10 O 1.21277 * 120.00017 * 359.97438 * 9 8 6 11 11 N 1.34773 * 119.99738 * 179.97438 * 9 8 6 12 12 C 1.47019 * 125.64967 * 0.02562 * 11 9 8 13 13 C 1.54325 * 107.27403 * 181.02244 * 12 11 9 14 14 C 1.55158 * 102.93996 * 22.18646 * 13 12 11 15 15 O 1.42909 * 111.00074 * 82.57718 * 14 13 12 16 16 C 1.50700 * 111.00690 * 206.38469 * 14 13 12 17 17 H 1.08004 * 119.99671 * 118.55030 * 16 14 13 18 18 C 1.37872 * 120.00232 * 298.55148 * 16 14 13 19 19 N 1.31517 * 119.99866 * 359.97438 * 18 16 14 20 20 Si 1.86796 * 120.00258 * 179.97438 * 18 16 14 21 21 H 1.48509 * 109.46908 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47293 * 119.99795 * 20 18 16 23 23 H 1.48500 * 109.47677 * 240.00337 * 20 18 16 24 24 C 1.47426 * 125.64602 * 179.71108 * 11 9 8 25 25 C 1.54885 * 110.48635 * 122.61683 * 2 1 3 26 26 H 1.08999 * 109.46910 * 297.38781 * 1 2 3 27 27 H 1.08997 * 109.47187 * 57.38441 * 1 2 3 28 28 H 1.09001 * 109.47585 * 177.38650 * 1 2 3 29 29 H 1.09002 * 110.03192 * 337.00322 * 4 2 1 30 30 H 1.09003 * 110.02871 * 98.38039 * 4 2 1 31 31 H 1.09003 * 110.03349 * 240.71458 * 5 4 2 32 32 H 1.08998 * 110.03555 * 119.28911 * 5 4 2 33 33 H 1.09003 * 109.47103 * 188.31689 * 8 6 5 34 34 H 1.08991 * 109.47595 * 308.32029 * 8 6 5 35 35 H 1.08999 * 109.88495 * 300.43755 * 12 11 9 36 36 H 1.09004 * 109.88808 * 61.60371 * 12 11 9 37 37 H 1.08999 * 110.72472 * 140.55562 * 13 12 11 38 38 H 1.09002 * 110.71879 * 263.82980 * 13 12 11 39 39 H 0.96701 * 113.99735 * 61.44778 * 15 14 13 40 40 H 0.97000 * 119.99469 * 179.97438 * 19 18 16 41 41 H 1.08995 * 110.37172 * 274.74799 * 24 11 9 42 42 H 1.09002 * 110.36367 * 37.07464 * 24 11 9 43 43 H 1.08999 * 110.76189 * 38.30405 * 25 2 1 44 44 H 1.08999 * 110.91620 * 275.00500 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9125 1.0206 0.0000 4 6 2.0698 -0.7789 -1.2173 5 6 3.3164 -1.5406 -0.7341 6 6 3.4903 -1.1986 0.7600 7 1 4.1893 -0.3713 0.8832 8 6 3.9700 -2.4240 1.5405 9 6 5.3800 -2.7614 1.1288 10 8 5.9453 -2.0882 0.2932 11 7 6.0127 -3.8111 1.6893 12 6 5.4480 -4.7072 2.7089 13 6 6.5385 -5.7389 3.0669 14 6 7.8476 -5.0222 2.6426 15 8 8.2908 -4.1212 3.6595 16 6 8.9242 -6.0204 2.3028 17 1 9.3403 -6.0476 1.3065 18 6 9.3780 -6.8988 3.2637 19 7 8.8717 -6.8653 4.4770 20 14 10.7121 -8.1366 2.8423 21 1 11.1112 -7.9697 1.4216 22 1 11.8908 -7.9109 3.7169 23 1 10.1953 -9.5127 3.0534 24 6 7.3835 -4.2548 1.3768 25 6 2.0721 -0.7821 1.2221 26 1 -0.3633 0.4727 0.9125 27 1 -0.3633 0.5539 -0.8656 28 1 -0.3634 -1.0266 -0.0469 29 1 1.3174 -1.4822 -1.5742 30 1 2.3403 -0.0859 -2.0140 31 1 4.1927 -1.2173 -1.2960 32 1 3.1691 -2.6137 -0.8565 33 1 3.9454 -2.2072 2.6084 34 1 3.3168 -3.2698 1.3263 35 1 5.1743 -4.1346 3.5951 36 1 4.5716 -5.2176 2.3095 37 1 6.5399 -5.9428 4.1376 38 1 6.4007 -6.6586 2.4982 39 1 8.4980 -4.5495 4.5014 40 1 9.1907 -7.4836 5.1529 41 1 7.3801 -4.9154 0.5099 42 1 8.0288 -3.3949 1.1971 43 1 1.4581 -1.6601 1.4222 44 1 2.1250 -0.1410 2.1020 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592846025.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:32 Heat of formation + Delta-G solvation = -114.236921 kcal Electronic energy + Delta-G solvation = -22729.108575 eV Core-core repulsion = 19451.913591 eV Total energy + Delta-G solvation = -3277.194983 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.73286 -38.40312 -37.03432 -34.25380 -32.59378 -32.23478 -30.10527 -29.38527 -28.38449 -27.12352 -25.13378 -23.92415 -22.18864 -20.20771 -20.00508 -19.53639 -18.45086 -17.18987 -16.50778 -16.19613 -15.22230 -15.06302 -14.95044 -14.30594 -14.16457 -13.77704 -13.58908 -13.40093 -13.06720 -12.96244 -12.40186 -12.19703 -12.02261 -11.77084 -11.61577 -11.34613 -11.30156 -11.04862 -10.92333 -10.86516 -10.75085 -10.65444 -10.63110 -10.52441 -10.46024 -10.31391 -10.03125 -9.41242 -9.21670 -8.69678 -8.22731 -7.94652 -6.29867 -4.37654 3.15904 3.17806 3.27022 3.31578 3.61317 4.25939 4.50503 4.55865 4.65820 4.95442 5.07941 5.12942 5.24243 5.35657 5.41970 5.51350 5.55511 5.55855 5.60381 5.68229 5.74340 5.74515 5.85476 5.87057 5.89247 6.02222 6.03612 6.07248 6.13138 6.28265 6.32878 6.44661 6.46032 6.52993 6.67351 6.89510 6.98893 7.28854 7.33585 7.72176 8.01569 8.19950 8.64835 8.72642 9.29582 9.38444 10.77554 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.046071 B = 0.003304 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.611690 B = 8472.591527 C = 8671.476364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.098 4.098 3 H 0.072 0.928 4 C -0.121 4.121 5 C -0.114 4.114 6 C -0.074 4.074 7 H 0.081 0.919 8 C -0.128 4.128 9 C 0.521 3.479 10 O -0.554 6.554 11 N -0.609 5.609 12 C 0.099 3.901 13 C -0.136 4.136 14 C 0.247 3.753 15 O -0.582 6.582 16 C -0.534 4.534 17 H 0.065 0.935 18 C 0.072 3.928 19 N -0.895 5.895 20 Si 0.902 3.098 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.282 1.282 24 C 0.120 3.880 25 C -0.117 4.117 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.057 0.943 36 H 0.052 0.948 37 H 0.086 0.914 38 H 0.067 0.933 39 H 0.380 0.620 40 H 0.267 0.733 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.849 7.257 -3.927 16.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 H 0.091 0.909 4 C -0.159 4.159 5 C -0.151 4.151 6 C -0.093 4.093 7 H 0.099 0.901 8 C -0.168 4.168 9 C 0.310 3.690 10 O -0.433 6.433 11 N -0.342 5.342 12 C -0.024 4.024 13 C -0.175 4.175 14 C 0.206 3.794 15 O -0.391 6.391 16 C -0.572 4.572 17 H 0.083 0.917 18 C -0.130 4.130 19 N -0.535 5.535 20 Si 0.730 3.270 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.002 4.002 25 C -0.154 4.154 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.105 0.895 38 H 0.086 0.914 39 H 0.230 0.770 40 H 0.077 0.923 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.673 8.020 -4.714 17.373 hybrid contribution 0.760 -1.335 0.450 1.601 sum -13.913 6.685 -4.264 16.014 Atomic orbital electron populations 1.21802 0.95253 1.01663 1.01334 1.21948 0.95131 0.99323 0.95235 0.90938 1.22247 0.97505 0.98737 0.97362 1.22133 0.97636 0.99723 0.95639 1.21717 0.96052 0.96881 0.94674 0.90081 1.21708 0.93966 0.99408 1.01748 1.20242 0.88058 0.79344 0.81385 1.90638 1.68254 1.50651 1.33782 1.48660 1.16485 1.28646 1.40404 1.22171 0.97476 0.92344 0.90382 1.23177 0.95019 0.96435 1.02880 1.19664 0.90257 0.85531 0.83900 1.86143 1.88680 1.38756 1.25496 1.21488 1.21114 1.16479 0.98132 0.91708 1.24991 0.96295 0.96930 0.94831 1.69728 1.42576 1.38291 1.02865 0.86368 0.81346 0.80500 0.78801 1.19579 1.20779 1.20842 1.22382 0.81024 0.98502 0.98261 1.22641 0.95754 0.99709 0.97302 0.92834 0.92949 0.92682 0.92091 0.92228 0.90971 0.92367 0.89303 0.89411 0.92464 0.92972 0.89549 0.91404 0.77029 0.92312 0.91197 0.91267 0.91379 0.91675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.14 37.16 0.34 -0.78 16 2 C -0.10 -0.91 3.46 -88.96 -0.31 -1.22 16 3 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 4 C -0.12 -1.24 6.37 -25.61 -0.16 -1.40 16 5 C -0.11 -1.45 5.49 -25.62 -0.14 -1.59 16 6 C -0.07 -0.94 2.45 -88.97 -0.22 -1.16 16 7 H 0.08 1.16 7.96 -51.93 -0.41 0.74 16 8 C -0.13 -1.76 4.29 -27.88 -0.12 -1.88 16 9 C 0.52 9.72 7.65 -10.98 -0.08 9.63 16 10 O -0.55 -11.95 15.16 5.56 0.08 -11.86 16 11 N -0.61 -12.06 3.32 -170.38 -0.57 -12.62 16 12 C 0.10 1.77 6.48 -3.07 -0.02 1.75 16 13 C -0.14 -2.89 5.38 -24.90 -0.13 -3.03 16 14 C 0.25 5.93 0.87 -89.50 -0.08 5.85 16 15 O -0.58 -14.78 13.17 -35.23 -0.46 -15.24 16 16 C -0.53 -13.85 8.27 -34.44 -0.28 -14.14 16 17 H 0.06 1.69 7.79 -52.48 -0.41 1.28 16 18 C 0.07 1.84 5.29 -17.82 -0.09 1.74 16 19 N -0.90 -22.80 10.76 55.43 0.60 -22.20 16 20 Si 0.90 20.09 29.54 -169.99 -5.02 15.07 16 21 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 C 0.12 2.70 6.10 -2.41 -0.01 2.69 16 25 C -0.12 -1.16 5.75 -24.75 -0.14 -1.30 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.42 8.08 -51.93 -0.42 0.00 16 29 H 0.06 0.58 7.79 -51.93 -0.40 0.17 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.07 1.06 7.69 -51.93 -0.40 0.66 16 32 H 0.06 0.75 7.75 -51.93 -0.40 0.35 16 33 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.09 1.06 8.01 -51.93 -0.42 0.65 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.09 1.91 7.55 -51.93 -0.39 1.52 16 38 H 0.07 1.46 8.03 -51.93 -0.42 1.04 16 39 H 0.38 9.57 7.56 45.56 0.34 9.91 16 40 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 41 H 0.07 1.53 8.04 -51.93 -0.42 1.12 16 42 H 0.07 1.67 8.03 -51.93 -0.42 1.25 16 43 H 0.07 0.64 7.97 -51.93 -0.41 0.22 16 44 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 345.95 15.07 5.21 5.21 Total: -1.00 -27.92 345.95 -8.71 -36.63 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -7.09 Total: 9.83 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -1.46 Total: -4.83 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: 0.03 Total: -34.82 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: -0.38 Total: -27.10 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -27.92 -8.71 -36.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592846025.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.602 kcal (2) G-P(sol) polarization free energy of solvation -27.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds