Wall clock time and date at job start Tue Mar 31 2020 06:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 110.54459 * 2 1 4 4 C 1.54273 * 110.48270 * 237.38563 * 2 1 3 5 5 C 1.53869 * 106.59806 * 217.71321 * 4 2 1 6 6 C 1.54266 * 106.60137 * 0.02562 * 5 4 2 7 7 H 1.09002 * 110.48845 * 264.93389 * 6 5 4 8 8 C 1.53002 * 110.59787 * 142.34152 * 6 5 4 9 9 C 1.50709 * 109.46884 * 68.32474 * 8 6 5 10 10 O 1.21277 * 120.00017 * 359.97438 * 9 8 6 11 11 N 1.34773 * 119.99738 * 179.97438 * 9 8 6 12 12 C 1.47019 * 125.64967 * 0.02562 * 11 9 8 13 13 C 1.54325 * 107.27403 * 181.02244 * 12 11 9 14 14 C 1.55158 * 102.93996 * 22.18646 * 13 12 11 15 15 O 1.42909 * 111.00074 * 82.57718 * 14 13 12 16 16 C 1.50700 * 111.00690 * 206.38469 * 14 13 12 17 17 H 1.08004 * 119.99671 * 118.55030 * 16 14 13 18 18 C 1.37872 * 120.00232 * 298.55148 * 16 14 13 19 19 N 1.31517 * 119.99866 * 359.97438 * 18 16 14 20 20 Si 1.86796 * 120.00258 * 179.97438 * 18 16 14 21 21 H 1.48509 * 109.46908 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47293 * 119.99795 * 20 18 16 23 23 H 1.48500 * 109.47677 * 240.00337 * 20 18 16 24 24 C 1.47426 * 125.64602 * 179.71108 * 11 9 8 25 25 C 1.54885 * 110.48635 * 122.61683 * 2 1 3 26 26 H 1.08999 * 109.46910 * 297.38781 * 1 2 3 27 27 H 1.08997 * 109.47187 * 57.38441 * 1 2 3 28 28 H 1.09001 * 109.47585 * 177.38650 * 1 2 3 29 29 H 1.09002 * 110.03192 * 337.00322 * 4 2 1 30 30 H 1.09003 * 110.02871 * 98.38039 * 4 2 1 31 31 H 1.09003 * 110.03349 * 240.71458 * 5 4 2 32 32 H 1.08998 * 110.03555 * 119.28911 * 5 4 2 33 33 H 1.09003 * 109.47103 * 188.31689 * 8 6 5 34 34 H 1.08991 * 109.47595 * 308.32029 * 8 6 5 35 35 H 1.08999 * 109.88495 * 300.43755 * 12 11 9 36 36 H 1.09004 * 109.88808 * 61.60371 * 12 11 9 37 37 H 1.08999 * 110.72472 * 140.55562 * 13 12 11 38 38 H 1.09002 * 110.71879 * 263.82980 * 13 12 11 39 39 H 0.96701 * 113.99735 * 61.44778 * 15 14 13 40 40 H 0.97000 * 119.99469 * 179.97438 * 19 18 16 41 41 H 1.08995 * 110.37172 * 274.74799 * 24 11 9 42 42 H 1.09002 * 110.36367 * 37.07464 * 24 11 9 43 43 H 1.08999 * 110.76189 * 38.30405 * 25 2 1 44 44 H 1.08999 * 110.91620 * 275.00500 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9125 1.0206 0.0000 4 6 2.0698 -0.7789 -1.2173 5 6 3.3164 -1.5406 -0.7341 6 6 3.4903 -1.1986 0.7600 7 1 4.1893 -0.3713 0.8832 8 6 3.9700 -2.4240 1.5405 9 6 5.3800 -2.7614 1.1288 10 8 5.9453 -2.0882 0.2932 11 7 6.0127 -3.8111 1.6893 12 6 5.4480 -4.7072 2.7089 13 6 6.5385 -5.7389 3.0669 14 6 7.8476 -5.0222 2.6426 15 8 8.2908 -4.1212 3.6595 16 6 8.9242 -6.0204 2.3028 17 1 9.3403 -6.0476 1.3065 18 6 9.3780 -6.8988 3.2637 19 7 8.8717 -6.8653 4.4770 20 14 10.7121 -8.1366 2.8423 21 1 11.1112 -7.9697 1.4216 22 1 11.8908 -7.9109 3.7169 23 1 10.1953 -9.5127 3.0534 24 6 7.3835 -4.2548 1.3768 25 6 2.0721 -0.7821 1.2221 26 1 -0.3633 0.4727 0.9125 27 1 -0.3633 0.5539 -0.8656 28 1 -0.3634 -1.0266 -0.0469 29 1 1.3174 -1.4822 -1.5742 30 1 2.3403 -0.0859 -2.0140 31 1 4.1927 -1.2173 -1.2960 32 1 3.1691 -2.6137 -0.8565 33 1 3.9454 -2.2072 2.6084 34 1 3.3168 -3.2698 1.3263 35 1 5.1743 -4.1346 3.5951 36 1 4.5716 -5.2176 2.3095 37 1 6.5399 -5.9428 4.1376 38 1 6.4007 -6.6586 2.4982 39 1 8.4980 -4.5495 4.5014 40 1 9.1907 -7.4836 5.1529 41 1 7.3801 -4.9154 0.5099 42 1 8.0288 -3.3949 1.1971 43 1 1.4581 -1.6601 1.4222 44 1 2.1250 -0.1410 2.1020 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592846025.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:32 Heat of formation + Delta-G solvation = -130.942657 kcal Electronic energy + Delta-G solvation = -22729.832990 eV Core-core repulsion = 19451.913591 eV Total energy + Delta-G solvation = -3277.919398 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.16886 -39.60177 -38.55223 -36.04348 -34.22274 -33.57625 -31.60531 -30.49988 -29.97913 -28.26272 -26.74086 -24.98582 -23.71268 -21.68286 -21.01295 -20.80068 -19.81549 -19.08835 -17.99953 -17.21788 -16.96174 -16.69821 -16.38581 -15.92404 -15.30961 -15.17558 -14.87618 -14.51681 -14.29945 -13.97217 -13.83596 -13.69397 -13.44937 -13.24514 -13.03407 -12.95578 -12.71130 -12.63585 -12.46942 -12.25601 -11.94532 -11.86126 -11.71855 -11.58194 -11.47452 -11.40941 -11.26054 -11.25128 -10.76702 -10.60512 -10.14891 -9.53890 -8.24535 -6.39207 1.40042 1.44642 1.54361 1.70059 2.11642 2.40268 3.00265 3.51928 3.68013 3.72787 3.81856 3.96361 4.05358 4.25308 4.31354 4.37591 4.43434 4.48762 4.56642 4.60441 4.70971 4.71987 4.77660 4.78741 4.85992 4.87522 4.93205 5.05615 5.15657 5.18457 5.20265 5.23714 5.33048 5.40396 5.45316 5.45632 5.54127 5.54620 5.63627 5.77208 6.08918 6.63325 6.70186 7.22578 7.31050 7.39688 8.81404 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.046071 B = 0.003304 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.611690 B = 8472.591527 C = 8671.476364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.097 4.097 3 H 0.069 0.931 4 C -0.117 4.117 5 C -0.115 4.115 6 C -0.076 4.076 7 H 0.057 0.943 8 C -0.118 4.118 9 C 0.513 3.487 10 O -0.591 6.591 11 N -0.614 5.614 12 C 0.106 3.894 13 C -0.127 4.127 14 C 0.233 3.767 15 O -0.593 6.593 16 C -0.562 4.562 17 H 0.051 0.949 18 C 0.037 3.963 19 N -0.905 5.905 20 Si 0.959 3.041 21 H -0.276 1.276 22 H -0.280 1.280 23 H -0.274 1.274 24 C 0.125 3.875 25 C -0.107 4.107 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.040 0.960 32 H 0.055 0.945 33 H 0.108 0.892 34 H 0.114 0.886 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.378 0.622 40 H 0.271 0.729 41 H 0.068 0.932 42 H 0.041 0.959 43 H 0.083 0.917 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.270 6.849 -3.309 18.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.116 4.116 3 H 0.087 0.913 4 C -0.155 4.155 5 C -0.153 4.153 6 C -0.095 4.095 7 H 0.076 0.924 8 C -0.157 4.157 9 C 0.304 3.696 10 O -0.473 6.473 11 N -0.347 5.347 12 C -0.016 4.016 13 C -0.165 4.165 14 C 0.193 3.807 15 O -0.401 6.401 16 C -0.600 4.600 17 H 0.070 0.930 18 C -0.164 4.164 19 N -0.544 5.544 20 Si 0.785 3.215 21 H -0.200 1.200 22 H -0.206 1.206 23 H -0.199 1.199 24 C 0.002 3.998 25 C -0.145 4.145 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.126 0.874 34 H 0.132 0.868 35 H 0.093 0.907 36 H 0.108 0.892 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.227 0.773 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.059 0.941 43 H 0.101 0.899 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -17.121 7.613 -4.084 19.177 hybrid contribution 1.587 -1.183 0.232 1.993 sum -15.534 6.430 -3.852 17.247 Atomic orbital electron populations 1.21769 0.93661 1.02189 1.02052 1.21951 0.96384 0.98874 0.94344 0.91260 1.22227 0.96538 0.98835 0.97872 1.22106 0.97637 0.99834 0.95679 1.21712 0.97433 0.95754 0.94610 0.92448 1.21771 0.90434 1.00660 1.02820 1.21254 0.89708 0.78172 0.80450 1.90624 1.69551 1.51673 1.35444 1.48772 1.15339 1.29517 1.41080 1.22218 0.97109 0.91478 0.90784 1.22955 0.94683 0.96909 1.01993 1.19827 0.91230 0.85551 0.84088 1.86131 1.88990 1.39385 1.25643 1.21685 1.22563 1.17799 0.97946 0.93040 1.25587 0.97871 0.98165 0.94801 1.69781 1.42915 1.38532 1.03132 0.85496 0.79042 0.78825 0.78142 1.20050 1.20625 1.19906 1.22121 0.82701 0.97206 0.97786 1.22611 0.93609 1.00506 0.97758 0.92008 0.92446 0.92211 0.90878 0.92317 0.94120 0.92579 0.87351 0.86774 0.90689 0.89225 0.90547 0.92011 0.77317 0.91954 0.91340 0.94053 0.89867 0.90697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.14 71.98 0.66 -1.08 16 2 C -0.10 -1.58 3.46 -9.72 -0.03 -1.61 16 3 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 4 C -0.12 -2.21 6.37 31.32 0.20 -2.01 16 5 C -0.11 -2.86 5.49 31.32 0.17 -2.69 16 6 C -0.08 -1.82 2.45 -9.73 -0.02 -1.84 16 7 H 0.06 1.64 7.96 -2.39 -0.02 1.62 16 8 C -0.12 -2.92 4.29 29.85 0.13 -2.79 16 9 C 0.51 18.82 7.65 87.66 0.67 19.49 16 10 O -0.59 -26.17 15.16 -3.02 -0.05 -26.21 16 11 N -0.61 -23.87 3.32 -811.35 -2.70 -26.57 16 12 C 0.11 3.53 6.48 86.73 0.56 4.09 16 13 C -0.13 -5.28 5.38 31.78 0.17 -5.11 16 14 C 0.23 11.35 0.87 -10.07 -0.01 11.34 16 15 O -0.59 -30.60 13.17 -148.98 -1.96 -32.56 16 16 C -0.56 -29.69 8.27 25.60 0.21 -29.48 16 17 H 0.05 2.77 7.79 -2.91 -0.02 2.75 16 18 C 0.04 1.90 5.29 84.65 0.45 2.35 16 19 N -0.90 -45.81 10.76 21.45 0.23 -45.58 16 20 Si 0.96 41.16 29.54 68.60 2.03 43.18 16 21 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 22 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 23 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 24 C 0.12 5.77 6.10 86.93 0.53 6.30 16 25 C -0.11 -1.81 5.75 31.88 0.18 -1.63 16 26 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.06 0.70 8.08 -2.39 -0.02 0.68 16 29 H 0.07 1.21 7.79 -2.39 -0.02 1.19 16 30 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.04 1.24 7.69 -2.39 -0.02 1.22 16 32 H 0.06 1.39 7.75 -2.39 -0.02 1.37 16 33 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.11 2.29 8.01 -2.39 -0.02 2.27 16 35 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.08 3.32 7.55 -2.39 -0.02 3.30 16 38 H 0.06 2.61 8.03 -2.39 -0.02 2.59 16 39 H 0.38 19.31 7.56 -74.06 -0.56 18.75 16 40 H 0.27 13.02 8.31 -92.71 -0.77 12.25 16 41 H 0.07 3.11 8.04 -2.39 -0.02 3.09 16 42 H 0.04 2.09 8.03 -2.39 -0.02 2.07 16 43 H 0.08 1.19 7.97 -2.39 -0.02 1.17 16 44 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -61.37 345.95 1.82 -59.55 By element: Atomic # 1 Polarization: 32.47 SS G_CDS: 0.40 Total: 32.87 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: 3.87 Total: -4.67 kcal Atomic # 7 Polarization: -69.68 SS G_CDS: -2.47 Total: -72.15 kcal Atomic # 8 Polarization: -56.77 SS G_CDS: -2.01 Total: -58.78 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.18 kcal Total: -61.37 1.82 -59.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592846025.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.397 kcal (2) G-P(sol) polarization free energy of solvation -61.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds