Wall clock time and date at job start Tue Mar 31 2020 06:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 110.67148 * 2 1 4 4 C 1.54889 * 110.75426 * 236.76584 * 2 1 3 5 5 C 1.54264 * 104.19508 * 203.55609 * 4 2 1 6 6 C 1.53879 * 106.59970 * 23.61055 * 5 4 2 7 7 H 1.08999 * 110.03279 * 240.71456 * 6 5 4 8 8 C 1.53001 * 110.03108 * 119.33396 * 6 5 4 9 9 C 1.50690 * 109.47329 * 67.09286 * 8 6 5 10 10 O 1.21278 * 120.00295 * 359.97438 * 9 8 6 11 11 N 1.34779 * 119.99968 * 179.97438 * 9 8 6 12 12 C 1.47427 * 125.65048 * 0.03057 * 11 9 8 13 13 C 1.54911 * 104.83261 * 204.08824 * 12 11 9 14 14 C 1.55161 * 101.58125 * 322.98818 * 13 12 11 15 15 O 1.42901 * 110.71766 * 276.96424 * 14 13 12 16 16 C 1.50694 * 110.71891 * 153.86617 * 14 13 12 17 17 H 1.07999 * 120.00332 * 5.09308 * 16 14 13 18 18 C 1.37880 * 119.99816 * 185.09292 * 16 14 13 19 19 N 1.31516 * 119.99449 * 183.77295 * 18 16 14 20 20 Si 1.86792 * 120.00073 * 3.77595 * 18 16 14 21 21 H 1.48505 * 109.47486 * 84.82673 * 20 18 16 22 22 H 1.48507 * 109.47153 * 204.82860 * 20 18 16 23 23 H 1.48500 * 109.46984 * 324.82316 * 20 18 16 24 24 C 1.47023 * 125.64911 * 179.71415 * 11 9 8 25 25 C 1.54262 * 106.59643 * 0.02562 * 6 5 4 26 26 H 1.09003 * 109.47004 * 181.78392 * 1 2 3 27 27 H 1.09000 * 109.46536 * 301.77779 * 1 2 3 28 28 H 1.09000 * 109.47388 * 61.78116 * 1 2 3 29 29 H 1.08996 * 110.48821 * 84.88063 * 4 2 1 30 30 H 1.08995 * 110.59831 * 322.28896 * 4 2 1 31 31 H 1.09007 * 110.03618 * 264.32648 * 5 4 2 32 32 H 1.09002 * 110.07742 * 142.91463 * 5 4 2 33 33 H 1.09005 * 109.47165 * 187.09547 * 8 6 5 34 34 H 1.09007 * 109.46920 * 307.08916 * 8 6 5 35 35 H 1.08996 * 110.36262 * 322.92958 * 12 11 9 36 36 H 1.09003 * 110.36714 * 85.13997 * 12 11 9 37 37 H 1.09001 * 110.99943 * 81.06207 * 13 12 11 38 38 H 1.08995 * 110.99833 * 204.87769 * 13 12 11 39 39 H 0.96702 * 113.99618 * 298.54117 * 15 14 13 40 40 H 0.97005 * 119.99752 * 179.97438 * 19 18 16 41 41 H 1.09005 * 109.88664 * 298.40255 * 24 11 9 42 42 H 1.09007 * 109.88174 * 59.56517 * 24 11 9 43 43 H 1.09002 * 110.48854 * 95.07081 * 25 6 5 44 44 H 1.08997 * 110.48591 * 217.71190 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 6 2.0789 -0.7938 -1.2115 5 6 3.4949 -1.2214 -0.7735 6 6 3.4975 -1.2223 0.7653 7 1 4.2359 -0.5123 1.1379 8 6 3.8104 -2.6258 1.2880 9 6 5.2308 -2.9872 0.9379 10 8 5.9246 -2.2000 0.3297 11 7 5.7303 -4.1853 1.3006 12 6 5.0010 -5.2325 2.0388 13 6 6.1044 -6.0736 2.7279 14 6 7.2181 -6.0712 1.6476 15 8 6.9760 -7.0847 0.6696 16 6 8.5739 -6.2555 2.2791 17 1 8.6543 -6.4484 3.3387 18 6 9.7117 -6.1777 1.5042 19 7 10.8896 -6.4118 2.0404 20 14 9.5801 -5.7400 -0.3069 21 1 9.5439 -4.2631 -0.4579 22 1 10.7554 -6.2833 -1.0341 23 1 8.3365 -6.3257 -0.8686 24 6 7.0907 -4.6671 1.0199 25 6 2.0828 -0.7959 1.2086 26 1 -0.3633 -1.0272 0.0320 27 1 -0.3632 0.5412 0.8736 28 1 -0.3634 0.4859 -0.9055 29 1 2.1289 -0.1564 -2.0942 30 1 1.4600 -1.6691 -1.4086 31 1 4.2321 -0.5108 -1.1476 32 1 3.7166 -2.2208 -1.1478 33 1 3.6866 -2.6463 2.3708 34 1 3.1295 -3.3439 0.8309 35 1 4.3447 -4.7838 2.7844 36 1 4.4248 -5.8507 1.3502 37 1 6.4475 -5.5925 3.6438 38 1 5.7556 -7.0866 2.9280 39 1 6.9689 -7.9830 1.0277 40 1 11.6900 -6.3575 1.4952 41 1 7.2488 -4.7246 -0.0571 42 1 7.8220 -3.9947 1.4686 43 1 1.4642 -1.6718 1.4046 44 1 2.1355 -0.1596 2.0920 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592846026.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:35 Heat of formation + Delta-G solvation = -101.282208 kcal Electronic energy + Delta-G solvation = -22991.422150 eV Core-core repulsion = 19714.788925 eV Total energy + Delta-G solvation = -3276.633225 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.93214 -38.58409 -37.27965 -34.53536 -32.65880 -32.42726 -30.35774 -29.56373 -28.67969 -27.28790 -25.08539 -23.88058 -22.70272 -20.26180 -20.06170 -19.66248 -18.65994 -17.25333 -16.72017 -16.38027 -15.67056 -15.07151 -14.75695 -14.55807 -14.35864 -14.01797 -13.67969 -13.25377 -13.10416 -12.90971 -12.74405 -12.66773 -12.12495 -11.94926 -11.91140 -11.77682 -11.41686 -11.13203 -11.00920 -10.94429 -10.74041 -10.65121 -10.63624 -10.61878 -10.36960 -10.29766 -10.15422 -9.40447 -9.06804 -8.74481 -8.47889 -8.10053 -6.23773 -4.36266 3.03446 3.31750 3.41330 3.52208 3.62659 4.42105 4.42908 4.51215 4.59425 4.89640 5.02530 5.07448 5.14314 5.19934 5.26042 5.32528 5.37925 5.44855 5.50047 5.54271 5.61059 5.63411 5.65462 5.70776 5.78137 5.81404 5.94447 5.99136 6.05419 6.07656 6.09192 6.27871 6.39055 6.45558 6.47581 6.54018 6.63080 6.76933 7.04245 7.47317 8.01751 8.17620 8.59076 8.71133 8.87882 9.39624 10.86352 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.031649 B = 0.004046 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.478177 B = 6918.202182 C = 7300.565448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.098 4.098 3 H 0.074 0.926 4 C -0.122 4.122 5 C -0.110 4.110 6 C -0.076 4.076 7 H 0.079 0.921 8 C -0.128 4.128 9 C 0.519 3.481 10 O -0.546 6.546 11 N -0.613 5.613 12 C 0.101 3.899 13 C -0.146 4.146 14 C 0.215 3.785 15 O -0.573 6.573 16 C -0.552 4.552 17 H 0.080 0.920 18 C 0.090 3.910 19 N -0.885 5.885 20 Si 0.864 3.136 21 H -0.279 1.279 22 H -0.295 1.295 23 H -0.228 1.228 24 C 0.113 3.887 25 C -0.115 4.115 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.365 0.635 40 H 0.268 0.732 41 H 0.059 0.941 42 H 0.082 0.918 43 H 0.067 0.933 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.887 7.393 -1.333 21.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.117 4.117 3 H 0.092 0.908 4 C -0.160 4.160 5 C -0.148 4.148 6 C -0.095 4.095 7 H 0.097 0.903 8 C -0.168 4.168 9 C 0.307 3.693 10 O -0.425 6.425 11 N -0.347 5.347 12 C -0.022 4.022 13 C -0.184 4.184 14 C 0.175 3.825 15 O -0.380 6.380 16 C -0.589 4.589 17 H 0.099 0.901 18 C -0.116 4.116 19 N -0.521 5.521 20 Si 0.691 3.309 21 H -0.205 1.205 22 H -0.222 1.222 23 H -0.151 1.151 24 C -0.009 4.009 25 C -0.153 4.153 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.212 0.788 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.100 0.900 43 H 0.086 0.914 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -19.382 8.391 -2.102 21.225 hybrid contribution 0.274 -0.337 -0.433 0.613 sum -19.107 8.054 -2.535 20.890 Atomic orbital electron populations 1.21759 0.95197 1.01706 1.01376 1.22099 0.95067 0.99248 0.95274 0.90767 1.22475 0.96642 0.99447 0.97403 1.22097 0.96077 1.01888 0.94734 1.21524 0.96757 0.95228 0.95975 0.90257 1.21790 0.93914 0.98464 1.02650 1.20334 0.89261 0.80315 0.79360 1.90677 1.61228 1.49174 1.41388 1.48723 1.14943 1.15217 1.55813 1.22330 0.95411 0.89632 0.94778 1.23327 0.95870 0.99417 0.99798 1.19979 0.93597 0.84499 0.84471 1.86518 1.94861 1.17803 1.38802 1.21202 0.88135 1.52601 0.96983 0.90148 1.24974 0.94981 0.92681 0.98920 1.69918 0.98260 1.46771 1.37146 0.87214 0.79072 0.79130 0.85462 1.20479 1.22241 1.15134 1.22558 0.82224 0.95971 1.00165 1.22515 0.95552 0.99644 0.97583 0.92677 0.92842 0.92850 0.92060 0.91847 0.91536 0.92046 0.89276 0.89271 0.91595 0.91693 0.90236 0.90591 0.78782 0.92265 0.92290 0.90005 0.91407 0.91728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.29 37.16 0.35 -0.71 16 2 C -0.10 -0.88 3.49 -88.61 -0.31 -1.19 16 3 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 4 C -0.12 -1.22 6.27 -25.07 -0.16 -1.38 16 5 C -0.11 -1.41 5.37 -25.61 -0.14 -1.54 16 6 C -0.08 -0.92 2.55 -89.50 -0.23 -1.15 16 7 H 0.08 1.09 7.95 -51.93 -0.41 0.68 16 8 C -0.13 -1.64 3.85 -27.89 -0.11 -1.74 16 9 C 0.52 9.43 7.39 -10.99 -0.08 9.35 16 10 O -0.55 -11.91 15.43 5.56 0.09 -11.82 16 11 N -0.61 -11.71 3.33 -170.51 -0.57 -12.27 16 12 C 0.10 1.56 6.68 -2.53 -0.02 1.55 16 13 C -0.15 -2.56 6.22 -24.58 -0.15 -2.71 16 14 C 0.21 4.76 0.68 -89.93 -0.06 4.70 16 15 O -0.57 -12.33 10.47 -35.23 -0.37 -12.70 16 16 C -0.55 -14.68 8.72 -34.44 -0.30 -14.98 16 17 H 0.08 2.28 8.03 -52.49 -0.42 1.86 16 18 C 0.09 2.55 5.47 -17.82 -0.10 2.45 16 19 N -0.89 -26.43 13.96 55.43 0.77 -25.66 16 20 Si 0.86 22.10 23.99 -169.99 -4.08 18.02 16 21 H -0.28 -7.29 7.11 56.52 0.40 -6.88 16 22 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 23 H -0.23 -5.73 5.40 56.52 0.31 -5.43 16 24 C 0.11 2.59 4.39 -3.06 -0.01 2.57 16 25 C -0.12 -1.08 5.81 -25.06 -0.15 -1.22 16 26 H 0.05 0.40 8.13 -51.93 -0.42 -0.02 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.60 8.05 -51.93 -0.42 0.18 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.06 0.87 7.36 -51.93 -0.38 0.49 16 33 H 0.09 0.98 7.85 -51.93 -0.41 0.57 16 34 H 0.09 1.00 8.14 -51.92 -0.42 0.58 16 35 H 0.07 0.81 7.48 -51.93 -0.39 0.42 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.08 1.43 8.04 -51.93 -0.42 1.01 16 38 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.37 6.59 9.10 45.56 0.41 7.00 16 40 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 41 H 0.06 1.46 5.70 -51.93 -0.30 1.17 16 42 H 0.08 2.06 7.62 -51.93 -0.40 1.66 16 43 H 0.07 0.58 7.76 -51.93 -0.40 0.18 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 337.60 15.07 5.09 5.09 Total: -1.00 -32.12 337.60 -7.52 -39.63 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -6.99 Total: 5.72 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: -1.46 Total: -6.01 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: 0.21 Total: -37.93 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: -0.28 Total: -24.53 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.08 Total: 18.02 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.12 -7.52 -39.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592846026.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.648 kcal (2) G-P(sol) polarization free energy of solvation -32.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds