Wall clock time and date at job start Tue Mar 31 2020 06:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47402 * 2 1 4 4 C 1.53001 * 109.47120 * 239.99642 * 2 1 3 5 5 C 1.52993 * 109.47144 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.47129 * 59.99973 * 5 4 2 7 7 C 1.52996 * 109.47259 * 300.00359 * 6 5 4 8 8 H 1.09004 * 109.47053 * 180.02562 * 7 6 5 9 9 C 1.50706 * 109.46953 * 299.99661 * 7 6 5 10 10 O 1.21274 * 120.00245 * 357.13537 * 9 7 6 11 11 N 1.34777 * 119.99533 * 177.13725 * 9 7 6 12 12 C 1.47415 * 125.65409 * 5.09207 * 11 9 7 13 13 C 1.54909 * 104.83569 * 155.90893 * 12 11 9 14 14 C 1.55155 * 101.58229 * 37.00496 * 13 12 11 15 15 O 1.42902 * 110.71611 * 82.86489 * 14 13 12 16 16 C 1.50698 * 110.72208 * 205.96091 * 14 13 12 17 17 H 1.07994 * 120.00130 * 21.57739 * 16 14 13 18 18 C 1.37880 * 120.00063 * 201.58494 * 16 14 13 19 19 N 1.31510 * 120.00233 * 173.01525 * 18 16 14 20 20 Si 1.86804 * 119.99735 * 353.00793 * 18 16 14 21 21 H 1.48499 * 109.47212 * 85.88630 * 20 18 16 22 22 H 1.48503 * 109.46907 * 205.88336 * 20 18 16 23 23 H 1.48497 * 109.47064 * 325.88271 * 20 18 16 24 24 C 1.47028 * 125.64295 * 185.13023 * 11 9 7 25 25 C 1.52993 * 109.47343 * 59.99773 * 7 6 5 26 26 H 1.09000 * 109.47021 * 300.00351 * 1 2 3 27 27 H 1.09006 * 109.46397 * 59.99846 * 1 2 3 28 28 H 1.09001 * 109.47402 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47275 * 300.00436 * 4 2 1 30 30 H 1.09004 * 109.46924 * 60.00159 * 4 2 1 31 31 H 1.08996 * 109.47324 * 180.02562 * 5 4 2 32 32 H 1.09001 * 109.47135 * 300.00208 * 5 4 2 33 33 H 1.09004 * 109.47375 * 180.02562 * 6 5 4 34 34 H 1.09001 * 109.46920 * 60.00103 * 6 5 4 35 35 H 1.08996 * 110.36706 * 37.06693 * 12 11 9 36 36 H 1.09000 * 110.36670 * 274.74384 * 12 11 9 37 37 H 1.09008 * 110.99813 * 278.93487 * 13 12 11 38 38 H 1.09001 * 111.00606 * 155.08783 * 13 12 11 39 39 H 0.96694 * 114.00018 * 56.39498 * 15 14 13 40 40 H 0.96993 * 120.00189 * 179.97438 * 19 18 16 41 41 H 1.09004 * 109.87804 * 61.60816 * 24 11 9 42 42 H 1.08999 * 109.88377 * 300.44160 * 24 11 9 43 43 H 1.09001 * 109.47135 * 60.00072 * 25 7 6 44 44 H 1.09008 * 109.47356 * 180.02562 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7219 -1.2489 6 6 4.0795 -1.4434 0.0004 7 6 3.5694 -0.7222 1.2496 8 1 3.9328 -1.2360 2.1396 9 6 4.0723 0.6985 1.2499 10 8 4.8121 1.0801 0.3679 11 7 3.6998 1.5449 2.2303 12 6 2.8965 1.1886 3.4139 13 6 3.2613 2.2550 4.4766 14 6 3.4147 3.5270 3.6016 15 8 2.1411 4.1243 3.3503 16 6 4.3452 4.5154 4.2560 17 1 5.0568 4.1792 4.9955 18 6 4.2880 5.8491 3.9108 19 7 5.0003 6.7318 4.5763 20 14 3.1986 6.4020 2.4976 21 1 1.8206 6.6383 2.9979 22 1 3.7378 7.6593 1.9197 23 1 3.1717 5.3482 1.4517 24 6 4.0268 2.9768 2.2962 25 6 2.0395 -0.7216 1.2493 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5139 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6767 -1.7490 -1.2492 30 1 1.6767 -0.2075 -2.1392 31 1 3.9333 -1.2354 -2.1390 32 1 3.9337 0.3056 -1.2487 33 1 5.1695 -1.4435 0.0009 34 1 3.7157 -2.4710 0.0002 35 1 3.1638 0.1931 3.7681 36 1 1.8332 1.2357 3.1789 37 1 4.1996 2.0068 4.9730 38 1 2.4569 2.3745 5.2024 39 1 1.6461 4.3465 4.1507 40 1 4.9603 7.6699 4.3332 41 1 3.5977 3.4948 1.4384 42 1 5.1086 3.1099 2.3091 43 1 1.6758 -1.7492 1.2491 44 1 1.6761 -0.2074 2.1391 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592846410.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:59 Heat of formation + Delta-G solvation = -102.865042 kcal Electronic energy + Delta-G solvation = -24081.340424 eV Core-core repulsion = 20804.638563 eV Total energy + Delta-G solvation = -3276.701862 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.48012 -38.35253 -36.89327 -34.81912 -32.52559 -32.38986 -31.36279 -29.87983 -28.45167 -26.39378 -25.30932 -23.58363 -22.22144 -21.51531 -20.38812 -19.69594 -18.42193 -17.42018 -16.49489 -15.79331 -15.41288 -15.15695 -14.87938 -14.49438 -14.45861 -14.03980 -13.62752 -13.22754 -13.04747 -12.75773 -12.54733 -12.37879 -12.31630 -12.00158 -11.89167 -11.69706 -11.65704 -11.52196 -11.34775 -10.94429 -10.80838 -10.61531 -10.52319 -10.30735 -10.20423 -10.09003 -9.93861 -9.28414 -9.15791 -8.69210 -8.51743 -8.04019 -6.21330 -4.33647 3.03556 3.42268 3.46112 3.56187 3.67362 4.47927 4.59976 4.64101 4.73966 4.90122 5.04915 5.13959 5.17047 5.20660 5.27461 5.38610 5.44118 5.50883 5.53790 5.60146 5.65453 5.72096 5.76597 5.81394 5.87716 5.94717 6.02141 6.06830 6.11529 6.25923 6.28970 6.34070 6.38668 6.51699 6.58590 6.61609 6.68641 6.80771 7.02141 7.46885 8.04952 8.12189 8.61165 8.62365 8.80950 9.40730 10.87550 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023948 B = 0.005491 C = 0.005374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.914917 B = 5098.089675 C = 5209.355445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 H 0.071 0.929 4 C -0.111 4.111 5 C -0.133 4.133 6 C -0.094 4.094 7 C -0.105 4.105 8 H 0.091 0.909 9 C 0.529 3.471 10 O -0.546 6.546 11 N -0.611 5.611 12 C 0.101 3.899 13 C -0.149 4.149 14 C 0.219 3.781 15 O -0.564 6.564 16 C -0.553 4.553 17 H 0.081 0.919 18 C 0.077 3.923 19 N -0.886 5.886 20 Si 0.940 3.060 21 H -0.288 1.288 22 H -0.322 1.322 23 H -0.268 1.268 24 C 0.114 3.886 25 C -0.111 4.111 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.090 0.910 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.372 0.628 40 H 0.267 0.733 41 H 0.064 0.936 42 H 0.080 0.920 43 H 0.069 0.931 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.460 -16.348 -5.248 19.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.115 4.115 3 H 0.089 0.911 4 C -0.148 4.148 5 C -0.170 4.170 6 C -0.132 4.132 7 C -0.127 4.127 8 H 0.109 0.891 9 C 0.317 3.683 10 O -0.424 6.424 11 N -0.344 5.344 12 C -0.022 4.022 13 C -0.187 4.187 14 C 0.179 3.821 15 O -0.372 6.372 16 C -0.590 4.590 17 H 0.099 0.901 18 C -0.128 4.128 19 N -0.521 5.521 20 Si 0.774 3.226 21 H -0.216 1.216 22 H -0.253 1.253 23 H -0.194 1.194 24 C -0.007 4.007 25 C -0.148 4.148 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.108 0.892 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.220 0.780 40 H 0.076 0.924 41 H 0.083 0.917 42 H 0.098 0.902 43 H 0.088 0.912 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.786 -16.098 -6.354 18.977 hybrid contribution -0.651 0.472 0.057 0.806 sum -8.437 -15.625 -6.297 18.841 Atomic orbital electron populations 1.21797 0.95210 1.01337 1.01776 1.21156 0.95411 1.00118 0.94784 0.91064 1.21581 0.96114 0.99886 0.97255 1.21755 0.94911 1.03532 0.96845 1.21277 1.00826 0.97777 0.93313 1.21318 0.97142 0.93632 1.00567 0.89057 1.20181 0.80415 0.86944 0.80722 1.90606 1.36841 1.78198 1.36796 1.48697 1.52562 1.10839 1.22342 1.22404 0.95164 0.98566 0.86067 1.23411 1.02082 0.96259 0.96997 1.20069 0.82065 0.90016 0.89965 1.86138 1.32850 1.81481 1.36723 1.21181 1.21025 0.91663 1.25154 0.90123 1.25116 0.95024 0.96454 0.96219 1.69957 1.40256 1.02416 1.39460 0.85880 0.78969 0.75588 0.82142 1.21563 1.25256 1.19401 1.22663 1.00712 0.77959 0.99412 1.21727 0.92931 1.01232 0.98956 0.92611 0.92848 0.92915 0.92468 0.92393 0.92589 0.89153 0.91477 0.91893 0.91741 0.91529 0.90313 0.90569 0.78046 0.92364 0.91748 0.90165 0.91226 0.90670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.19 37.16 0.34 -1.17 16 2 C -0.10 -1.19 2.50 -90.62 -0.23 -1.42 16 3 H 0.07 1.12 7.22 -51.93 -0.37 0.75 16 4 C -0.11 -1.28 5.20 -26.73 -0.14 -1.42 16 5 C -0.13 -1.74 5.63 -26.73 -0.15 -1.89 16 6 C -0.09 -1.15 5.08 -26.73 -0.14 -1.29 16 7 C -0.11 -1.37 2.40 -91.77 -0.22 -1.59 16 8 H 0.09 1.04 7.89 -51.93 -0.41 0.63 16 9 C 0.53 9.34 5.66 -10.98 -0.06 9.28 16 10 O -0.55 -11.47 14.10 5.56 0.08 -11.39 16 11 N -0.61 -11.17 3.30 -170.52 -0.56 -11.73 16 12 C 0.10 1.51 5.14 -2.53 -0.01 1.50 16 13 C -0.15 -2.56 6.22 -24.58 -0.15 -2.71 16 14 C 0.22 4.73 0.68 -89.94 -0.06 4.67 16 15 O -0.56 -11.79 8.85 -35.23 -0.31 -12.10 16 16 C -0.55 -14.52 8.72 -34.44 -0.30 -14.82 16 17 H 0.08 2.30 7.98 -52.49 -0.42 1.88 16 18 C 0.08 2.15 5.46 -17.82 -0.10 2.05 16 19 N -0.89 -26.22 13.96 55.43 0.77 -25.45 16 20 Si 0.94 23.52 24.91 -169.99 -4.23 19.29 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.32 -8.28 7.11 56.52 0.40 -7.88 16 23 H -0.27 -6.77 5.27 56.52 0.30 -6.47 16 24 C 0.11 2.52 5.67 -3.06 -0.02 2.51 16 25 C -0.11 -1.26 4.55 -26.73 -0.12 -1.38 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.09 1.49 5.62 -51.93 -0.29 1.20 16 33 H 0.07 0.88 8.07 -51.93 -0.42 0.46 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.79 7.59 -51.93 -0.39 0.40 16 36 H 0.07 0.93 6.85 -51.93 -0.36 0.57 16 37 H 0.08 1.40 7.99 -51.92 -0.41 0.98 16 38 H 0.08 1.14 8.12 -51.93 -0.42 0.72 16 39 H 0.37 6.59 9.06 45.56 0.41 7.00 16 40 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.06 1.55 6.36 -51.93 -0.33 1.22 16 42 H 0.08 1.92 7.82 -51.93 -0.41 1.52 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.07 0.85 4.92 -51.92 -0.26 0.60 16 LS Contribution 325.65 15.07 4.91 4.91 Total: -1.00 -31.22 325.65 -7.41 -38.63 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -6.70 Total: 5.55 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: -1.36 Total: -7.70 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: 0.21 Total: -37.18 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -0.23 Total: -23.49 kcal Atomic # 14 Polarization: 23.52 SS G_CDS: -4.23 Total: 19.29 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.22 -7.41 -38.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592846410.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.239 kcal (2) G-P(sol) polarization free energy of solvation -31.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds