Wall clock time and date at job start Tue Mar 31 2020 06:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47440 * 2 1 4 4 C 1.53001 * 109.47325 * 239.99732 * 2 1 3 5 5 C 1.52998 * 109.47317 * 180.02562 * 4 2 1 6 6 C 1.53004 * 109.47046 * 60.00065 * 5 4 2 7 7 C 1.53001 * 109.47009 * 300.00123 * 6 5 4 8 8 H 1.09001 * 109.47549 * 300.00098 * 7 6 5 9 9 C 1.50701 * 109.47249 * 179.97438 * 7 6 5 10 10 O 1.21279 * 120.00388 * 240.00259 * 9 7 6 11 11 N 1.34779 * 119.99740 * 60.00065 * 9 7 6 12 12 C 1.47421 * 125.64852 * 359.97120 * 11 9 7 13 13 C 1.54917 * 104.83002 * 155.91133 * 12 11 9 14 14 C 1.55151 * 101.58025 * 37.01304 * 13 12 11 15 15 O 1.42892 * 110.72056 * 82.86198 * 14 13 12 16 16 C 1.50703 * 110.71812 * 206.13470 * 14 13 12 17 17 H 1.08009 * 119.99657 * 118.54612 * 16 14 13 18 18 C 1.37871 * 120.00432 * 298.54747 * 16 14 13 19 19 N 1.31522 * 119.99505 * 359.97438 * 18 16 14 20 20 Si 1.86795 * 120.00554 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47375 * 89.99722 * 20 18 16 22 22 H 1.48504 * 109.47283 * 210.00156 * 20 18 16 23 23 H 1.48504 * 109.46820 * 329.99893 * 20 18 16 24 24 C 1.47021 * 125.64696 * 180.02562 * 11 9 7 25 25 C 1.52998 * 109.47317 * 60.00043 * 7 6 5 26 26 H 1.09001 * 109.47207 * 300.00484 * 1 2 3 27 27 H 1.09005 * 109.46748 * 59.99877 * 1 2 3 28 28 H 1.09001 * 109.47817 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47080 * 300.00489 * 4 2 1 30 30 H 1.08998 * 109.46958 * 60.00088 * 4 2 1 31 31 H 1.08991 * 109.47075 * 179.97438 * 5 4 2 32 32 H 1.09001 * 109.46766 * 300.00425 * 5 4 2 33 33 H 1.08999 * 109.47308 * 180.02562 * 6 5 4 34 34 H 1.08997 * 109.47147 * 60.00019 * 6 5 4 35 35 H 1.09002 * 110.36865 * 37.07626 * 12 11 9 36 36 H 1.08994 * 110.46657 * 274.79775 * 12 11 9 37 37 H 1.08998 * 111.00193 * 155.08783 * 13 12 11 38 38 H 1.09004 * 111.00194 * 278.93638 * 13 12 11 39 39 H 0.96702 * 114.00013 * 61.45358 * 15 14 13 40 40 H 0.97003 * 119.99636 * 179.97438 * 19 18 16 41 41 H 1.08996 * 109.88310 * 300.43775 * 24 11 9 42 42 H 1.09002 * 109.88672 * 61.44815 * 24 11 9 43 43 H 1.08997 * 109.47132 * 59.99925 * 25 7 6 44 44 H 1.09002 * 109.47331 * 179.97438 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5700 -0.7219 -1.2489 6 6 4.0795 -1.4435 0.0004 7 6 3.5695 -0.7222 1.2496 8 1 3.9331 0.3054 1.2499 9 6 4.0707 -1.4332 2.4802 10 8 3.2820 -1.8938 3.2780 11 7 5.3956 -1.5573 2.6940 12 6 6.4600 -1.0480 1.8103 13 6 7.6925 -0.8752 2.7328 14 6 7.5475 -2.0968 3.6782 15 8 8.0889 -3.2722 3.0722 16 6 8.2094 -1.8259 5.0047 17 1 7.6226 -1.8281 5.9115 18 6 9.5640 -1.5752 5.0609 19 7 10.2786 -1.5730 3.9567 20 14 10.3846 -1.2400 6.7051 21 1 10.8489 -2.5204 7.2967 22 1 11.5466 -0.3375 6.5037 23 1 9.4104 -0.5955 7.6222 24 6 6.0188 -2.2241 3.8467 25 6 2.0395 -0.7216 1.2493 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3635 -1.0276 -0.0005 29 1 1.6767 -1.7489 -1.2492 30 1 1.6768 -0.2075 -2.1392 31 1 3.9333 -1.2361 -2.1385 32 1 3.9337 0.3057 -1.2486 33 1 5.1695 -1.4435 0.0009 34 1 3.7158 -2.4710 0.0002 35 1 6.1701 -0.0889 1.3810 36 1 6.6756 -1.7668 1.0198 37 1 8.6190 -0.9312 2.1614 38 1 7.6351 0.0595 3.2905 39 1 9.0335 -3.2131 2.8739 40 1 11.2315 -1.3962 3.9962 41 1 5.7058 -1.7372 4.7703 42 1 5.7319 -3.2755 3.8665 43 1 1.6758 -1.7491 1.2491 44 1 1.6761 -0.2081 2.1395 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592846411.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:02 Heat of formation + Delta-G solvation = -115.618222 kcal Electronic energy + Delta-G solvation = -23284.169895 eV Core-core repulsion = 20006.915014 eV Total energy + Delta-G solvation = -3277.254881 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.09531 -38.21990 -36.99712 -34.38414 -32.74398 -32.23254 -31.02557 -29.55372 -28.33386 -26.43646 -25.31780 -23.43656 -22.16344 -21.39567 -19.92549 -19.64913 -18.63515 -17.24318 -16.41661 -15.49853 -15.21722 -14.99379 -14.90777 -14.47515 -14.23793 -14.20337 -13.55611 -13.15079 -12.99148 -12.93149 -12.47509 -12.09488 -11.97164 -11.91275 -11.66167 -11.51988 -11.35398 -11.33009 -11.11791 -10.99745 -10.90519 -10.63689 -10.55243 -10.48533 -10.36117 -10.12589 -10.03976 -9.41484 -9.16867 -8.67918 -8.23951 -7.97963 -6.30013 -4.37386 3.10339 3.19626 3.26864 3.30533 3.56914 4.26106 4.61117 4.61535 4.66507 4.96957 5.05065 5.09316 5.14535 5.30508 5.39390 5.43768 5.49836 5.58803 5.62339 5.66453 5.75393 5.76053 5.89316 5.91678 5.93083 6.00276 6.10956 6.12150 6.17092 6.18477 6.29026 6.35893 6.45726 6.46423 6.70819 6.90637 6.97994 7.28572 7.33868 7.71907 8.01477 8.15514 8.64183 8.68915 9.28907 9.37836 10.77499 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.035787 B = 0.003946 C = 0.003773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.212830 B = 7094.937692 C = 7419.691753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 H 0.069 0.931 4 C -0.115 4.115 5 C -0.116 4.116 6 C -0.119 4.119 7 C -0.100 4.100 8 H 0.092 0.908 9 C 0.524 3.476 10 O -0.556 6.556 11 N -0.607 5.607 12 C 0.096 3.904 13 C -0.135 4.135 14 C 0.247 3.753 15 O -0.585 6.585 16 C -0.535 4.535 17 H 0.064 0.936 18 C 0.073 3.927 19 N -0.896 5.896 20 Si 0.902 3.098 21 H -0.278 1.278 22 H -0.285 1.285 23 H -0.273 1.273 24 C 0.122 3.878 25 C -0.092 4.092 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.088 0.912 38 H 0.066 0.934 39 H 0.382 0.618 40 H 0.268 0.732 41 H 0.070 0.930 42 H 0.059 0.941 43 H 0.068 0.932 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.817 4.528 -11.101 16.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 H 0.087 0.913 4 C -0.153 4.153 5 C -0.154 4.154 6 C -0.157 4.157 7 C -0.121 4.121 8 H 0.110 0.890 9 C 0.313 3.687 10 O -0.436 6.436 11 N -0.340 5.340 12 C -0.027 4.027 13 C -0.174 4.174 14 C 0.207 3.793 15 O -0.394 6.394 16 C -0.573 4.573 17 H 0.082 0.918 18 C -0.130 4.130 19 N -0.535 5.535 20 Si 0.730 3.270 21 H -0.204 1.204 22 H -0.211 1.211 23 H -0.197 1.197 24 C 0.000 4.000 25 C -0.130 4.130 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.106 0.894 38 H 0.085 0.915 39 H 0.232 0.768 40 H 0.078 0.922 41 H 0.089 0.911 42 H 0.077 0.923 43 H 0.087 0.913 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.747 4.108 -10.688 16.404 hybrid contribution 1.255 0.462 0.803 1.560 sum -10.492 4.570 -9.885 15.122 Atomic orbital electron populations 1.21810 0.95262 1.01825 1.01428 1.21162 0.95427 0.99578 0.94956 0.91275 1.21620 0.95596 1.00743 0.97294 1.21518 0.95577 1.00757 0.97519 1.21681 1.01674 0.99471 0.92827 1.21252 0.97293 1.00358 0.93224 0.89029 1.20256 0.80873 0.80287 0.87331 1.90644 1.54676 1.50309 1.47928 1.48647 1.04736 1.55800 1.24768 1.22565 0.88844 0.97370 0.93920 1.23314 0.95350 1.01070 0.97664 1.19454 0.86912 0.82061 0.90874 1.86136 1.29533 1.40434 1.83287 1.21522 0.93744 1.48911 0.93113 0.91800 1.24981 0.97137 0.93732 0.97146 1.69703 1.07582 1.49430 1.26822 0.86419 0.78872 0.78312 0.83410 1.20389 1.21051 1.19726 1.22054 0.93760 0.96573 0.87580 1.21386 0.92675 1.01605 0.97311 0.92668 0.92899 0.92687 0.91960 0.92183 0.91750 0.91847 0.90463 0.91605 0.92158 0.91796 0.89390 0.91496 0.76833 0.92243 0.91130 0.92255 0.91300 0.91391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.19 37.16 0.34 -0.95 16 2 C -0.09 -0.92 2.72 -90.62 -0.25 -1.17 16 3 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 4 C -0.12 -1.06 5.20 -26.73 -0.14 -1.20 16 5 C -0.12 -1.13 5.92 -26.73 -0.16 -1.29 16 6 C -0.12 -1.47 5.01 -26.73 -0.13 -1.60 16 7 C -0.10 -1.40 1.88 -91.77 -0.17 -1.57 16 8 H 0.09 1.18 7.85 -51.93 -0.41 0.78 16 9 C 0.52 9.89 7.21 -10.98 -0.08 9.81 16 10 O -0.56 -12.31 16.31 5.56 0.09 -12.22 16 11 N -0.61 -12.01 3.32 -170.52 -0.57 -12.58 16 12 C 0.10 1.70 5.13 -2.53 -0.01 1.68 16 13 C -0.14 -2.87 5.47 -24.58 -0.13 -3.01 16 14 C 0.25 5.93 0.84 -89.94 -0.08 5.85 16 15 O -0.59 -14.55 13.08 -35.23 -0.46 -15.01 16 16 C -0.53 -13.97 8.21 -34.44 -0.28 -14.25 16 17 H 0.06 1.69 7.57 -52.48 -0.40 1.29 16 18 C 0.07 1.85 5.28 -17.82 -0.09 1.76 16 19 N -0.90 -22.75 10.69 55.43 0.59 -22.15 16 20 Si 0.90 20.19 29.54 -169.99 -5.02 15.17 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 24 C 0.12 2.78 6.21 -3.06 -0.02 2.76 16 25 C -0.09 -1.18 3.77 -26.73 -0.10 -1.28 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.99 4.99 -51.93 -0.26 0.73 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.90 7.36 -51.93 -0.38 0.52 16 36 H 0.06 1.10 7.07 -51.93 -0.37 0.73 16 37 H 0.09 1.93 7.54 -51.93 -0.39 1.54 16 38 H 0.07 1.47 8.04 -51.93 -0.42 1.05 16 39 H 0.38 9.44 7.49 45.56 0.34 9.78 16 40 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 41 H 0.07 1.65 7.66 -51.93 -0.40 1.25 16 42 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 43 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 44 H 0.07 0.94 8.10 -51.93 -0.42 0.51 16 LS Contribution 337.74 15.07 5.09 5.09 Total: -1.00 -27.92 337.74 -8.46 -36.39 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -6.88 Total: 9.78 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: -1.31 Total: -4.46 kcal Atomic # 7 Polarization: -34.76 SS G_CDS: 0.03 Total: -34.73 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: -0.37 Total: -27.23 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -27.92 -8.46 -36.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592846411.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.233 kcal (2) G-P(sol) polarization free energy of solvation -27.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds