Wall clock time and date at job start Tue Mar 31 2020 06:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47452 * 2 1 4 4 C 1.53010 * 109.46788 * 240.00397 * 2 1 3 5 5 C 1.52995 * 109.46788 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47434 * 60.00319 * 5 4 2 7 7 C 1.53000 * 109.46644 * 299.99342 * 6 5 4 8 8 H 1.08998 * 109.47489 * 300.00374 * 7 6 5 9 9 C 1.50705 * 109.47223 * 180.02562 * 7 6 5 10 10 O 1.21284 * 119.99784 * 265.12998 * 9 7 6 11 11 N 1.34769 * 120.00228 * 85.12651 * 9 7 6 12 12 C 1.47427 * 125.64998 * 5.06106 * 11 9 7 13 13 C 1.54907 * 104.83740 * 204.09365 * 12 11 9 14 14 C 1.55158 * 101.57896 * 322.99380 * 13 12 11 15 15 O 1.42904 * 110.71757 * 276.95786 * 14 13 12 16 16 C 1.50696 * 110.72111 * 153.86580 * 14 13 12 17 17 H 1.08000 * 119.99893 * 5.53886 * 16 14 13 18 18 C 1.37876 * 119.99943 * 185.54498 * 16 14 13 19 19 N 1.31519 * 119.99734 * 175.26640 * 18 16 14 20 20 Si 1.86799 * 120.00270 * 355.26094 * 18 16 14 21 21 H 1.48497 * 109.46739 * 94.87721 * 20 18 16 22 22 H 1.48502 * 109.47330 * 214.87422 * 20 18 16 23 23 H 1.48499 * 109.46894 * 334.87730 * 20 18 16 24 24 C 1.47018 * 125.65082 * 184.75959 * 11 9 7 25 25 C 1.52996 * 109.47428 * 120.00343 * 2 1 3 26 26 H 1.09003 * 109.47452 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.46793 * 299.99535 * 1 2 3 28 28 H 1.08995 * 109.47549 * 59.99683 * 1 2 3 29 29 H 1.09003 * 109.46800 * 300.00002 * 4 2 1 30 30 H 1.08995 * 109.47141 * 59.99670 * 4 2 1 31 31 H 1.09003 * 109.47069 * 179.97438 * 5 4 2 32 32 H 1.09003 * 109.47452 * 299.99603 * 5 4 2 33 33 H 1.09002 * 109.46866 * 180.02562 * 6 5 4 34 34 H 1.08998 * 109.47483 * 59.99720 * 6 5 4 35 35 H 1.09001 * 110.36312 * 322.93385 * 12 11 9 36 36 H 1.09000 * 110.36486 * 85.14309 * 12 11 9 37 37 H 1.09004 * 111.00358 * 81.06430 * 13 12 11 38 38 H 1.08996 * 111.00441 * 204.87947 * 13 12 11 39 39 H 0.96693 * 114.00188 * 298.54959 * 15 14 13 40 40 H 0.97005 * 120.00009 * 179.97438 * 19 18 16 41 41 H 1.09001 * 109.87989 * 298.39482 * 24 11 9 42 42 H 1.09000 * 109.88800 * 59.55505 * 24 11 9 43 43 H 1.08992 * 109.47226 * 299.99704 * 25 2 1 44 44 H 1.08998 * 109.47181 * 59.99908 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5698 -0.7218 -1.2491 6 6 4.0794 -1.4435 0.0000 7 6 3.5695 -0.7223 1.2493 8 1 3.9332 0.3052 1.2496 9 6 4.0719 -1.4328 2.4798 10 8 3.3774 -2.2634 3.0264 11 7 5.2928 -1.1452 2.9727 12 6 6.1938 -0.0899 2.4748 13 6 7.6121 -0.5472 2.8975 14 6 7.3338 -1.1824 4.2855 15 8 7.2922 -0.1785 5.3017 16 6 8.3708 -2.2260 4.6119 17 1 9.2145 -2.3732 3.9539 18 6 8.2423 -2.9929 5.7504 19 7 9.0951 -3.9657 5.9876 20 14 6.8573 -2.6503 6.9561 21 1 5.7062 -3.5381 6.6528 22 1 7.3304 -2.9086 8.3399 23 1 6.4344 -1.2321 6.8341 24 6 5.9442 -1.8279 4.1001 25 6 2.0400 -0.7213 1.2491 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 1.6765 -1.7489 -1.2494 30 1 1.6765 -0.2074 -2.1393 31 1 3.9332 -1.2360 -2.1389 32 1 3.9336 0.3057 -1.2488 33 1 5.1694 -1.4435 0.0004 34 1 3.7157 -2.4711 -0.0002 35 1 6.1270 -0.0152 1.3894 36 1 5.9487 0.8668 2.9359 37 1 8.0077 -1.2870 2.2015 38 1 8.2872 0.3040 2.9850 39 1 8.1199 0.3105 5.4056 40 1 9.0050 -4.5051 6.7888 41 1 5.3499 -1.6992 5.0048 42 1 6.0572 -2.8886 3.8761 43 1 1.6768 -0.2075 2.1391 44 1 1.6767 -1.7489 1.2491 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592846412.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:05 Heat of formation + Delta-G solvation = -104.775347 kcal Electronic energy + Delta-G solvation = -23416.202681 eV Core-core repulsion = 20139.417982 eV Total energy + Delta-G solvation = -3276.784699 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.17290 -38.47214 -37.16325 -34.57073 -32.82477 -32.42763 -31.15211 -29.99613 -28.55237 -26.53890 -25.33620 -23.36898 -22.42191 -21.68533 -19.99664 -19.67642 -18.74586 -17.25341 -16.76415 -15.83481 -15.41055 -14.93903 -14.74387 -14.58660 -14.39806 -14.26401 -13.86522 -13.49260 -13.02288 -12.71252 -12.60311 -12.52202 -12.35056 -11.95239 -11.91201 -11.82089 -11.59711 -11.41140 -11.19531 -11.08805 -10.91415 -10.75073 -10.61694 -10.50930 -10.32118 -10.18288 -10.07382 -9.32416 -9.02208 -8.68684 -8.41620 -8.08882 -6.22963 -4.35512 2.99518 3.32173 3.42172 3.51580 3.68606 4.44559 4.52456 4.53929 4.62148 4.96905 4.99131 5.02714 5.07753 5.20117 5.20597 5.28790 5.33030 5.40100 5.50874 5.52387 5.58806 5.62867 5.69306 5.70373 5.83773 5.86677 5.94521 6.04005 6.07612 6.10701 6.12121 6.16250 6.23530 6.40107 6.48764 6.55555 6.64478 6.78259 7.04710 7.48226 8.01768 8.18273 8.58224 8.71530 8.87766 9.40514 10.86919 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.029229 B = 0.004556 C = 0.004336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.733241 B = 6144.616036 C = 6456.025692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 H 0.069 0.931 4 C -0.115 4.115 5 C -0.116 4.116 6 C -0.108 4.108 7 C -0.100 4.100 8 H 0.087 0.913 9 C 0.525 3.475 10 O -0.549 6.549 11 N -0.611 5.611 12 C 0.101 3.899 13 C -0.146 4.146 14 C 0.215 3.785 15 O -0.572 6.572 16 C -0.552 4.552 17 H 0.080 0.920 18 C 0.089 3.911 19 N -0.885 5.885 20 Si 0.856 3.144 21 H -0.283 1.283 22 H -0.294 1.294 23 H -0.214 1.214 24 C 0.115 3.885 25 C -0.096 4.096 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.363 0.637 40 H 0.267 0.733 41 H 0.059 0.941 42 H 0.082 0.918 43 H 0.063 0.937 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.877 10.441 -13.861 20.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 H 0.087 0.913 4 C -0.153 4.153 5 C -0.153 4.153 6 C -0.146 4.146 7 C -0.121 4.121 8 H 0.105 0.895 9 C 0.313 3.687 10 O -0.428 6.428 11 N -0.344 5.344 12 C -0.022 4.022 13 C -0.184 4.184 14 C 0.175 3.825 15 O -0.379 6.379 16 C -0.589 4.589 17 H 0.098 0.902 18 C -0.116 4.116 19 N -0.521 5.521 20 Si 0.682 3.318 21 H -0.210 1.210 22 H -0.221 1.221 23 H -0.136 1.136 24 C -0.007 4.007 25 C -0.134 4.134 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.211 0.789 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.100 0.900 43 H 0.082 0.918 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.878 9.616 -13.416 20.336 hybrid contribution 0.089 0.135 0.707 0.725 sum -11.788 9.751 -12.710 19.889 Atomic orbital electron populations 1.21813 0.95193 1.01911 1.01461 1.21145 0.95481 0.99503 0.94862 0.91277 1.21623 0.95494 1.00873 0.97302 1.21516 0.95689 1.00701 0.97411 1.21472 1.00787 0.99771 0.92597 1.21264 0.97406 1.00257 0.93199 0.89481 1.20294 0.79989 0.83116 0.85293 1.90668 1.55683 1.35194 1.61207 1.48694 1.16202 1.35483 1.34020 1.22350 0.90782 0.90860 0.98212 1.23326 0.94119 1.00825 1.00122 1.19984 0.91561 0.86930 0.84038 1.86607 1.39781 1.52969 1.58497 1.21191 1.09276 1.18507 1.09970 0.90211 1.24976 0.95754 0.93355 0.97544 1.69931 1.36674 1.18552 1.26914 0.87356 0.82215 0.82414 0.79779 1.20969 1.22138 1.13625 1.22513 0.93195 0.97142 0.87838 1.21428 0.92639 1.01982 0.97339 0.92611 0.92691 0.92822 0.91831 0.92087 0.91658 0.91843 0.91292 0.91215 0.91510 0.91718 0.90241 0.90627 0.78947 0.92326 0.92322 0.90025 0.91800 0.90708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.19 37.15 0.34 -0.90 16 2 C -0.09 -0.86 2.72 -90.62 -0.25 -1.11 16 3 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 4 C -0.12 -1.01 5.20 -26.73 -0.14 -1.15 16 5 C -0.12 -1.04 5.92 -26.73 -0.16 -1.20 16 6 C -0.11 -1.27 5.14 -26.73 -0.14 -1.41 16 7 C -0.10 -1.34 1.82 -91.79 -0.17 -1.50 16 8 H 0.09 1.03 7.24 -51.93 -0.38 0.65 16 9 C 0.52 9.78 6.95 -10.99 -0.08 9.70 16 10 O -0.55 -12.36 16.43 5.55 0.09 -12.27 16 11 N -0.61 -11.76 3.33 -170.52 -0.57 -12.32 16 12 C 0.10 1.57 6.36 -2.53 -0.02 1.55 16 13 C -0.15 -2.55 6.22 -24.58 -0.15 -2.70 16 14 C 0.21 4.75 0.68 -89.93 -0.06 4.69 16 15 O -0.57 -12.20 9.92 -35.23 -0.35 -12.55 16 16 C -0.55 -14.63 8.72 -34.44 -0.30 -14.93 16 17 H 0.08 2.26 8.03 -52.49 -0.42 1.84 16 18 C 0.09 2.52 5.44 -17.82 -0.10 2.42 16 19 N -0.89 -26.45 13.96 55.43 0.77 -25.67 16 20 Si 0.86 21.79 24.50 -169.99 -4.17 17.63 16 21 H -0.28 -7.44 7.11 56.52 0.40 -7.04 16 22 H -0.29 -7.52 7.11 56.52 0.40 -7.11 16 23 H -0.21 -5.28 5.04 56.52 0.28 -5.00 16 24 C 0.11 2.64 4.58 -3.06 -0.01 2.63 16 25 C -0.10 -1.19 4.02 -26.76 -0.11 -1.30 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.82 7.45 -51.93 -0.39 0.43 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.07 0.84 6.70 -51.93 -0.35 0.49 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.08 1.43 8.04 -51.93 -0.42 1.01 16 38 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.36 6.48 9.10 45.56 0.41 6.90 16 40 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 41 H 0.06 1.46 5.97 -51.93 -0.31 1.15 16 42 H 0.08 2.05 7.81 -51.93 -0.41 1.65 16 43 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 44 H 0.07 1.04 7.87 -51.93 -0.41 0.63 16 LS Contribution 334.58 15.07 5.04 5.04 Total: -1.00 -32.24 334.58 -7.49 -39.73 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -6.98 Total: 5.64 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: -1.33 Total: -5.22 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 0.21 Total: -38.00 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: -0.26 Total: -24.82 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.17 Total: 17.63 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.24 -7.49 -39.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592846412.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.045 kcal (2) G-P(sol) polarization free energy of solvation -32.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds