Wall clock time and date at job start Tue Mar 31 2020 06:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47147 * 2 1 4 4 C 1.53004 * 109.47090 * 239.99566 * 2 1 3 5 5 C 1.53000 * 109.47090 * 180.02562 * 4 2 1 6 6 C 1.52995 * 109.46920 * 60.00244 * 5 4 2 7 7 C 1.52999 * 109.47525 * 299.99699 * 6 5 4 8 8 H 1.08996 * 109.47651 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.47342 * 300.00737 * 7 6 5 10 10 O 1.21276 * 120.00466 * 118.11149 * 9 7 6 11 11 N 1.34784 * 119.99526 * 298.10786 * 9 7 6 12 12 C 1.47017 * 125.64599 * 174.65960 * 11 9 7 13 13 C 1.54323 * 107.26991 * 178.97770 * 12 11 9 14 14 C 1.55151 * 102.94419 * 337.80813 * 13 12 11 15 15 O 1.42904 * 111.00452 * 277.38757 * 14 13 12 16 16 C 1.50696 * 111.00557 * 153.57558 * 14 13 12 17 17 H 1.07999 * 120.00190 * 244.30692 * 16 14 13 18 18 C 1.37873 * 119.99899 * 64.58286 * 16 14 13 19 19 N 1.31519 * 120.00527 * 0.02562 * 18 16 14 20 20 Si 1.86811 * 119.99951 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.46951 * 90.00228 * 20 18 16 22 22 H 1.48498 * 109.47195 * 209.99729 * 20 18 16 23 23 H 1.48495 * 109.47064 * 330.00080 * 20 18 16 24 24 C 1.47460 * 125.62943 * 354.66471 * 11 9 7 25 25 C 1.53000 * 109.46776 * 60.00212 * 7 6 5 26 26 H 1.09003 * 109.46931 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47277 * 299.99586 * 1 2 3 28 28 H 1.08997 * 109.47493 * 60.00265 * 1 2 3 29 29 H 1.08996 * 109.46663 * 60.00286 * 4 2 1 30 30 H 1.08999 * 109.47480 * 300.00230 * 4 2 1 31 31 H 1.08999 * 109.47147 * 300.00433 * 5 4 2 32 32 H 1.08989 * 109.47265 * 180.02562 * 5 4 2 33 33 H 1.09005 * 109.46900 * 180.02562 * 6 5 4 34 34 H 1.08994 * 109.47740 * 60.00227 * 6 5 4 35 35 H 1.09001 * 109.88361 * 59.56175 * 12 11 9 36 36 H 1.09001 * 110.01581 * 298.46642 * 12 11 9 37 37 H 1.09004 * 110.72160 * 219.43915 * 13 12 11 38 38 H 1.09002 * 110.87373 * 96.24681 * 13 12 11 39 39 H 0.96695 * 114.00362 * 295.41877 * 15 14 13 40 40 H 0.96995 * 120.00358 * 180.02562 * 19 18 16 41 41 H 1.09000 * 110.35278 * 85.25237 * 24 11 9 42 42 H 1.09000 * 110.40625 * 322.90874 * 24 11 9 43 43 H 1.08999 * 109.47147 * 59.99968 * 25 7 6 44 44 H 1.09001 * 109.47068 * 180.02562 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5700 -0.7219 -1.2489 6 6 4.0794 -1.4435 0.0003 7 6 3.5695 -0.7222 1.2496 8 1 3.9320 -1.2365 2.1396 9 6 4.0723 0.6984 1.2499 10 8 3.2851 1.6203 1.2153 11 7 5.3969 0.9444 1.2886 12 6 6.0258 2.2690 1.1826 13 6 7.5504 2.0634 1.3040 14 6 7.6600 0.7008 2.0378 15 8 7.5168 0.8665 3.4499 16 6 8.9587 0.0118 1.7067 17 1 8.9511 -0.9274 1.1735 18 6 10.1563 0.5776 2.0894 19 7 10.1654 1.7183 2.7439 20 14 11.7662 -0.2769 1.6796 21 1 12.2525 0.1917 0.3570 22 1 12.7758 0.0441 2.7202 23 1 11.5500 -1.7453 1.6357 24 6 6.4549 -0.0708 1.4442 25 6 2.0395 -0.7217 1.2493 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.6767 -0.2075 -2.1392 30 1 1.6767 -1.7490 -1.2492 31 1 3.9337 0.3056 -1.2487 32 1 3.9333 -1.2354 -2.1390 33 1 5.1695 -1.4435 0.0008 34 1 3.7158 -2.4710 0.0002 35 1 5.6732 2.9124 1.9888 36 1 5.7880 2.7189 0.2186 37 1 8.0008 2.8587 1.8980 38 1 8.0147 2.0096 0.3193 39 1 8.2227 1.3858 3.8586 40 1 11.0080 2.1165 3.0129 41 1 6.7171 -0.4967 0.4757 42 1 6.1318 -0.8546 2.1293 43 1 1.6758 -1.7492 1.2490 44 1 1.6762 -0.2074 2.1390 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592846413.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:07 Heat of formation + Delta-G solvation = -110.807408 kcal Electronic energy + Delta-G solvation = -23784.201408 eV Core-core repulsion = 20507.155139 eV Total energy + Delta-G solvation = -3277.046268 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.31986 -38.06431 -36.60877 -34.29193 -32.67987 -32.22221 -30.92658 -29.62500 -28.29218 -26.24090 -25.17597 -23.69185 -21.99024 -21.11209 -20.13007 -19.80648 -18.27310 -17.14964 -16.35239 -15.54071 -15.12805 -15.00510 -14.90797 -14.34328 -14.10952 -14.01138 -13.33216 -13.17097 -12.89945 -12.65420 -12.37519 -12.27758 -11.96265 -11.87048 -11.65967 -11.54606 -11.39191 -11.33957 -11.17784 -10.85960 -10.81082 -10.59759 -10.50089 -10.38204 -10.05773 -9.92395 -9.90121 -9.50310 -9.00274 -8.71183 -8.23864 -7.93050 -6.32979 -4.41850 3.14254 3.16220 3.24415 3.26990 3.61832 4.21857 4.74808 4.81770 4.84395 4.93793 5.10861 5.25655 5.31672 5.48805 5.51747 5.55554 5.63545 5.71486 5.77814 5.82545 5.92876 5.93530 5.96735 5.98427 6.00933 6.07975 6.14630 6.27105 6.30699 6.34614 6.37943 6.38643 6.48721 6.59078 6.77926 6.90839 7.01831 7.28142 7.32779 7.69015 7.94627 8.18766 8.60208 8.72575 9.26921 9.38218 10.74534 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.032462 B = 0.004508 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.346803 B = 6209.338327 C = 6564.009034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.109 4.109 3 H 0.103 0.897 4 C -0.111 4.111 5 C -0.121 4.121 6 C -0.115 4.115 7 C -0.106 4.106 8 H 0.093 0.907 9 C 0.532 3.468 10 O -0.555 6.555 11 N -0.605 5.605 12 C 0.109 3.891 13 C -0.138 4.138 14 C 0.249 3.751 15 O -0.584 6.584 16 C -0.538 4.538 17 H 0.065 0.935 18 C 0.073 3.927 19 N -0.895 5.895 20 Si 0.902 3.098 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.272 1.272 24 C 0.113 3.887 25 C -0.089 4.089 26 H 0.047 0.953 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.056 0.944 36 H 0.050 0.950 37 H 0.083 0.917 38 H 0.066 0.934 39 H 0.384 0.616 40 H 0.269 0.731 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.062 0.938 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.991 -4.680 -5.411 13.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.127 4.127 3 H 0.121 0.879 4 C -0.148 4.148 5 C -0.159 4.159 6 C -0.152 4.152 7 C -0.127 4.127 8 H 0.111 0.889 9 C 0.321 3.679 10 O -0.436 6.436 11 N -0.337 5.337 12 C -0.014 4.014 13 C -0.177 4.177 14 C 0.208 3.792 15 O -0.394 6.394 16 C -0.576 4.576 17 H 0.083 0.917 18 C -0.129 4.129 19 N -0.534 5.534 20 Si 0.730 3.270 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.197 1.197 24 C -0.009 4.009 25 C -0.126 4.126 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.102 0.898 38 H 0.085 0.915 39 H 0.235 0.765 40 H 0.079 0.921 41 H 0.092 0.908 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.893 -4.431 -5.450 13.812 hybrid contribution 1.598 -0.050 -0.070 1.600 sum -10.296 -4.482 -5.520 12.512 Atomic orbital electron populations 1.21780 0.95957 1.00877 1.01292 1.21457 0.94810 1.02615 0.93843 0.87874 1.21580 0.95320 1.00100 0.97827 1.21536 0.95885 1.00963 0.97471 1.21601 1.01549 0.98902 0.93158 1.21296 0.97337 0.93742 1.00295 0.88905 1.20146 0.80722 0.91079 0.75949 1.90544 1.54455 1.46722 1.51835 1.48608 1.05102 1.09619 1.70383 1.21999 0.95135 0.84492 0.99739 1.23196 0.90525 1.02078 1.01883 1.19585 0.90479 0.89673 0.79462 1.86094 1.53500 1.77586 1.22187 1.21449 0.90309 1.08047 1.37834 0.91695 1.24992 0.99527 0.94519 0.93904 1.69653 1.27592 1.17535 1.38597 0.86423 0.82447 0.79985 0.78163 1.20450 1.21020 1.19673 1.22529 0.87551 0.91215 0.99635 1.21339 0.92543 0.99991 0.98768 0.93420 0.92905 0.93192 0.92510 0.92505 0.92001 0.91990 0.90639 0.91166 0.92583 0.93182 0.89845 0.91504 0.76516 0.92100 0.90819 0.91402 0.91923 0.91661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.19 37.16 0.34 -1.25 16 2 C -0.11 -1.45 2.43 -90.61 -0.22 -1.67 16 3 H 0.10 1.71 5.45 -51.93 -0.28 1.42 16 4 C -0.11 -1.31 5.20 -26.73 -0.14 -1.45 16 5 C -0.12 -1.56 5.70 -26.73 -0.15 -1.71 16 6 C -0.11 -1.49 5.32 -26.73 -0.14 -1.63 16 7 C -0.11 -1.56 2.39 -91.77 -0.22 -1.77 16 8 H 0.09 1.33 7.68 -51.93 -0.40 0.93 16 9 C 0.53 9.86 5.68 -10.98 -0.06 9.79 16 10 O -0.56 -11.52 13.93 5.56 0.08 -11.44 16 11 N -0.61 -11.82 3.32 -170.49 -0.57 -12.39 16 12 C 0.11 2.20 6.87 -3.07 -0.02 2.17 16 13 C -0.14 -3.01 5.51 -24.90 -0.14 -3.15 16 14 C 0.25 5.76 0.88 -89.63 -0.08 5.68 16 15 O -0.58 -14.53 13.17 -35.23 -0.46 -15.00 16 16 C -0.54 -13.37 8.25 -34.44 -0.28 -13.66 16 17 H 0.06 1.58 7.78 -52.49 -0.41 1.17 16 18 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 19 N -0.89 -22.66 10.76 55.43 0.60 -22.07 16 20 Si 0.90 19.56 29.54 -169.99 -5.02 14.54 16 21 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 22 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 24 C 0.11 2.24 4.58 -2.51 -0.01 2.23 16 25 C -0.09 -1.18 4.38 -26.73 -0.12 -1.30 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.94 7.22 -51.93 -0.37 0.56 16 32 H 0.06 0.70 8.14 -51.94 -0.42 0.28 16 33 H 0.08 1.04 5.41 -51.93 -0.28 0.76 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.08 1.93 7.69 -51.93 -0.40 1.53 16 38 H 0.07 1.46 8.03 -51.93 -0.42 1.04 16 39 H 0.38 9.70 7.25 45.56 0.33 10.03 16 40 H 0.27 6.55 8.31 -40.82 -0.34 6.22 16 41 H 0.07 1.37 6.83 -51.93 -0.35 1.02 16 42 H 0.07 1.31 7.46 -51.93 -0.39 0.92 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.93 8.12 -51.93 -0.42 0.51 16 LS Contribution 332.33 15.07 5.01 5.01 Total: -1.00 -26.70 332.33 -8.46 -35.17 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -6.76 Total: 12.15 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: -1.34 Total: -5.97 kcal Atomic # 7 Polarization: -34.48 SS G_CDS: 0.03 Total: -34.45 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -0.39 Total: -26.44 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.54 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -26.70 -8.46 -35.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592846413.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.641 kcal (2) G-P(sol) polarization free energy of solvation -26.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds