Wall clock time and date at job start Tue Mar 31 2020 06:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47147 * 2 1 4 4 C 1.53004 * 109.47090 * 239.99566 * 2 1 3 5 5 C 1.53000 * 109.47090 * 180.02562 * 4 2 1 6 6 C 1.52995 * 109.46920 * 60.00244 * 5 4 2 7 7 C 1.52999 * 109.47525 * 299.99699 * 6 5 4 8 8 H 1.08996 * 109.47651 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.47342 * 300.00737 * 7 6 5 10 10 O 1.21276 * 120.00466 * 118.11149 * 9 7 6 11 11 N 1.34784 * 119.99526 * 298.10786 * 9 7 6 12 12 C 1.47017 * 125.64599 * 174.65960 * 11 9 7 13 13 C 1.54323 * 107.26991 * 178.97770 * 12 11 9 14 14 C 1.55151 * 102.94419 * 337.80813 * 13 12 11 15 15 O 1.42904 * 111.00452 * 277.38757 * 14 13 12 16 16 C 1.50696 * 111.00557 * 153.57558 * 14 13 12 17 17 H 1.07999 * 120.00190 * 244.30692 * 16 14 13 18 18 C 1.37873 * 119.99899 * 64.58286 * 16 14 13 19 19 N 1.31519 * 120.00527 * 0.02562 * 18 16 14 20 20 Si 1.86811 * 119.99951 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.46951 * 90.00228 * 20 18 16 22 22 H 1.48498 * 109.47195 * 209.99729 * 20 18 16 23 23 H 1.48495 * 109.47064 * 330.00080 * 20 18 16 24 24 C 1.47460 * 125.62943 * 354.66471 * 11 9 7 25 25 C 1.53000 * 109.46776 * 60.00212 * 7 6 5 26 26 H 1.09003 * 109.46931 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47277 * 299.99586 * 1 2 3 28 28 H 1.08997 * 109.47493 * 60.00265 * 1 2 3 29 29 H 1.08996 * 109.46663 * 60.00286 * 4 2 1 30 30 H 1.08999 * 109.47480 * 300.00230 * 4 2 1 31 31 H 1.08999 * 109.47147 * 300.00433 * 5 4 2 32 32 H 1.08989 * 109.47265 * 180.02562 * 5 4 2 33 33 H 1.09005 * 109.46900 * 180.02562 * 6 5 4 34 34 H 1.08994 * 109.47740 * 60.00227 * 6 5 4 35 35 H 1.09001 * 109.88361 * 59.56175 * 12 11 9 36 36 H 1.09001 * 110.01581 * 298.46642 * 12 11 9 37 37 H 1.09004 * 110.72160 * 219.43915 * 13 12 11 38 38 H 1.09002 * 110.87373 * 96.24681 * 13 12 11 39 39 H 0.96695 * 114.00362 * 295.41877 * 15 14 13 40 40 H 0.96995 * 120.00358 * 180.02562 * 19 18 16 41 41 H 1.09000 * 110.35278 * 85.25237 * 24 11 9 42 42 H 1.09000 * 110.40625 * 322.90874 * 24 11 9 43 43 H 1.08999 * 109.47147 * 59.99968 * 25 7 6 44 44 H 1.09001 * 109.47068 * 180.02562 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5700 -0.7219 -1.2489 6 6 4.0794 -1.4435 0.0003 7 6 3.5695 -0.7222 1.2496 8 1 3.9320 -1.2365 2.1396 9 6 4.0723 0.6984 1.2499 10 8 3.2851 1.6203 1.2153 11 7 5.3969 0.9444 1.2886 12 6 6.0258 2.2690 1.1826 13 6 7.5504 2.0634 1.3040 14 6 7.6600 0.7008 2.0378 15 8 7.5168 0.8665 3.4499 16 6 8.9587 0.0118 1.7067 17 1 8.9511 -0.9274 1.1735 18 6 10.1563 0.5776 2.0894 19 7 10.1654 1.7183 2.7439 20 14 11.7662 -0.2769 1.6796 21 1 12.2525 0.1917 0.3570 22 1 12.7758 0.0441 2.7202 23 1 11.5500 -1.7453 1.6357 24 6 6.4549 -0.0708 1.4442 25 6 2.0395 -0.7217 1.2493 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.6767 -0.2075 -2.1392 30 1 1.6767 -1.7490 -1.2492 31 1 3.9337 0.3056 -1.2487 32 1 3.9333 -1.2354 -2.1390 33 1 5.1695 -1.4435 0.0008 34 1 3.7158 -2.4710 0.0002 35 1 5.6732 2.9124 1.9888 36 1 5.7880 2.7189 0.2186 37 1 8.0008 2.8587 1.8980 38 1 8.0147 2.0096 0.3193 39 1 8.2227 1.3858 3.8586 40 1 11.0080 2.1165 3.0129 41 1 6.7171 -0.4967 0.4757 42 1 6.1318 -0.8546 2.1293 43 1 1.6758 -1.7492 1.2490 44 1 1.6762 -0.2074 2.1390 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592846413.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:07 Heat of formation + Delta-G solvation = -126.579502 kcal Electronic energy + Delta-G solvation = -23784.885337 eV Core-core repulsion = 20507.155139 eV Total energy + Delta-G solvation = -3277.730198 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.68361 -39.58200 -38.03178 -36.03663 -34.15083 -33.79113 -32.04640 -31.21797 -29.99785 -27.19388 -26.95900 -25.09502 -23.21209 -22.30519 -21.66568 -21.23172 -19.75334 -18.96787 -17.84161 -16.95210 -16.86005 -16.49114 -16.23919 -15.80971 -15.42240 -15.32371 -14.78178 -14.55848 -14.24081 -14.04565 -13.90546 -13.59886 -13.24395 -13.19485 -13.05378 -12.94148 -12.78104 -12.65305 -12.58738 -12.45894 -12.31149 -12.21163 -11.89733 -11.79394 -11.48437 -11.27077 -10.95704 -10.90724 -10.65671 -10.38769 -10.12214 -9.52483 -8.21696 -6.37023 1.45052 1.48488 1.56797 1.69169 2.11972 2.42024 3.03929 3.51623 3.74114 3.80592 3.83847 3.97867 4.17369 4.22838 4.27497 4.29222 4.31792 4.48889 4.51407 4.60716 4.63662 4.67395 4.75689 4.85301 4.87892 4.94271 4.99447 5.06326 5.08983 5.13426 5.22044 5.29120 5.35455 5.37908 5.44357 5.45257 5.50397 5.52387 5.73815 5.79157 6.07232 6.63785 6.71634 7.23732 7.33616 7.41647 8.84506 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.032462 B = 0.004508 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.346803 B = 6209.338327 C = 6564.009034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.111 4.111 3 H 0.064 0.936 4 C -0.106 4.106 5 C -0.121 4.121 6 C -0.111 4.111 7 C -0.103 4.103 8 H 0.100 0.900 9 C 0.526 3.474 10 O -0.581 6.581 11 N -0.610 5.610 12 C 0.114 3.886 13 C -0.127 4.127 14 C 0.231 3.769 15 O -0.594 6.594 16 C -0.555 4.555 17 H 0.068 0.932 18 C 0.032 3.968 19 N -0.914 5.914 20 Si 0.961 3.039 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.268 1.268 24 C 0.125 3.875 25 C -0.087 4.087 26 H 0.067 0.933 27 H 0.044 0.956 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.081 0.919 31 H 0.029 0.971 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.101 0.899 35 H 0.042 0.958 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.378 0.622 40 H 0.269 0.731 41 H 0.089 0.911 42 H 0.074 0.926 43 H 0.093 0.907 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.726 -7.018 -6.510 15.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.129 4.129 3 H 0.082 0.918 4 C -0.143 4.143 5 C -0.158 4.158 6 C -0.148 4.148 7 C -0.124 4.124 8 H 0.118 0.882 9 C 0.317 3.683 10 O -0.463 6.463 11 N -0.342 5.342 12 C -0.009 4.009 13 C -0.165 4.165 14 C 0.191 3.809 15 O -0.403 6.403 16 C -0.593 4.593 17 H 0.086 0.914 18 C -0.169 4.169 19 N -0.553 5.553 20 Si 0.787 3.213 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.192 1.192 24 C 0.003 3.997 25 C -0.124 4.124 26 H 0.086 0.914 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.048 0.952 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.119 0.881 35 H 0.061 0.939 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.228 0.772 40 H 0.079 0.921 41 H 0.107 0.893 42 H 0.093 0.907 43 H 0.112 0.888 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -12.644 -6.777 -6.556 15.773 hybrid contribution 1.802 0.736 0.286 1.968 sum -10.841 -6.042 -6.269 13.905 Atomic orbital electron populations 1.21737 0.94360 1.02157 1.01225 1.21388 0.96207 1.00603 0.94735 0.91777 1.21556 0.94421 1.01259 0.97077 1.21541 0.96736 0.99269 0.98300 1.21623 1.01039 1.00175 0.91955 1.21404 0.98370 0.90959 1.01672 0.88227 1.20975 0.79884 0.92693 0.74723 1.90545 1.54872 1.48130 1.52729 1.48684 1.05644 1.08983 1.70908 1.21846 0.94082 0.85182 0.99768 1.22991 0.91438 1.01013 1.01097 1.19855 0.91645 0.90653 0.78733 1.86089 1.53292 1.77507 1.23398 1.21734 0.91216 1.08346 1.38050 0.91394 1.25675 1.02273 0.95059 0.93848 1.69747 1.28136 1.18394 1.39071 0.85507 0.78914 0.79123 0.77767 1.20131 1.21211 1.19231 1.22412 0.86283 0.90803 1.00206 1.21372 0.91362 1.01557 0.98132 0.91367 0.93653 0.92706 0.92131 0.90089 0.95193 0.90192 0.91488 0.88078 0.93910 0.92166 0.91760 0.91751 0.77211 0.92130 0.89327 0.90723 0.88822 0.93220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 9.19 71.98 0.66 -2.13 16 2 C -0.11 -2.77 2.43 -10.79 -0.03 -2.80 16 3 H 0.06 2.14 5.45 -2.39 -0.01 2.12 16 4 C -0.11 -2.21 5.20 30.60 0.16 -2.05 16 5 C -0.12 -2.84 5.70 30.59 0.17 -2.67 16 6 C -0.11 -2.55 5.32 30.59 0.16 -2.38 16 7 C -0.10 -2.85 2.39 -11.54 -0.03 -2.88 16 8 H 0.10 2.64 7.68 -2.39 -0.02 2.62 16 9 C 0.53 19.40 5.68 87.66 0.50 19.90 16 10 O -0.58 -24.56 13.93 -3.02 -0.04 -24.60 16 11 N -0.61 -23.79 3.32 -811.70 -2.69 -26.49 16 12 C 0.11 4.69 6.87 86.73 0.60 5.29 16 13 C -0.13 -5.63 5.51 31.78 0.18 -5.45 16 14 C 0.23 10.75 0.88 -10.15 -0.01 10.75 16 15 O -0.59 -29.98 13.17 -148.98 -1.96 -31.94 16 16 C -0.56 -27.40 8.25 25.60 0.21 -27.18 16 17 H 0.07 3.23 7.78 -2.91 -0.02 3.21 16 18 C 0.03 1.60 5.29 84.65 0.45 2.05 16 19 N -0.91 -46.71 10.76 21.45 0.23 -46.48 16 20 Si 0.96 39.67 29.54 68.60 2.03 41.70 16 21 H -0.28 -11.18 7.11 99.48 0.71 -10.47 16 22 H -0.29 -11.82 7.11 99.48 0.71 -11.11 16 23 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 24 C 0.13 4.87 4.58 86.85 0.40 5.27 16 25 C -0.09 -2.12 4.38 30.60 0.13 -1.99 16 26 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.05 1.04 8.14 -2.39 -0.02 1.03 16 29 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.03 0.88 7.22 -2.39 -0.02 0.87 16 32 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.07 1.67 5.41 -2.38 -0.01 1.66 16 34 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.06 3.07 7.69 -2.38 -0.02 3.05 16 38 H 0.06 2.84 8.03 -2.39 -0.02 2.82 16 39 H 0.38 19.63 7.25 -74.06 -0.54 19.09 16 40 H 0.27 13.21 8.31 -92.71 -0.77 12.44 16 41 H 0.09 3.18 6.83 -2.39 -0.02 3.16 16 42 H 0.07 2.79 7.46 -2.39 -0.02 2.77 16 43 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.05 1.36 8.12 -2.39 -0.02 1.34 16 Total: -1.00 -57.43 332.33 1.56 -55.87 By element: Atomic # 1 Polarization: 37.79 SS G_CDS: 0.44 Total: 38.24 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: 3.56 Total: -6.29 kcal Atomic # 7 Polarization: -70.51 SS G_CDS: -2.46 Total: -72.97 kcal Atomic # 8 Polarization: -54.54 SS G_CDS: -2.00 Total: -56.55 kcal Atomic # 14 Polarization: 39.67 SS G_CDS: 2.03 Total: 41.70 kcal Total: -57.43 1.56 -55.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592846413.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.707 kcal (2) G-P(sol) polarization free energy of solvation -57.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds