Wall clock time and date at job start Tue Mar 31 2020 06:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 110.01755 * 2 1 4 4 C 1.54266 * 110.03261 * 238.56340 * 2 1 3 5 5 C 1.54885 * 104.19646 * 217.10419 * 4 2 1 6 6 C 1.54881 * 102.75098 * 37.94213 * 5 4 2 7 7 C 1.53874 * 110.03573 * 121.39575 * 2 1 3 8 8 H 1.09000 * 110.03450 * 238.62066 * 7 2 1 9 9 C 1.52997 * 110.02992 * 0.02562 * 7 2 1 10 10 C 1.50704 * 109.47157 * 185.00202 * 9 7 2 11 11 O 1.21280 * 119.99939 * 359.97438 * 10 9 7 12 12 N 1.34778 * 120.00087 * 180.02562 * 10 9 7 13 13 C 1.47421 * 125.64805 * 0.02562 * 12 10 9 14 14 C 1.54917 * 104.83002 * 155.84496 * 13 12 10 15 15 C 1.55151 * 101.58025 * 37.01304 * 14 13 12 16 16 O 1.42892 * 110.72056 * 82.86198 * 15 14 13 17 17 C 1.50703 * 110.71812 * 206.13470 * 15 14 13 18 18 H 1.08009 * 119.99657 * 118.54612 * 17 15 14 19 19 C 1.37871 * 120.00432 * 298.54747 * 17 15 14 20 20 N 1.31522 * 119.99505 * 359.97438 * 19 17 15 21 21 Si 1.86795 * 120.00554 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47375 * 89.99722 * 21 19 17 23 23 H 1.48504 * 109.47283 * 210.00156 * 21 19 17 24 24 H 1.48504 * 109.46820 * 329.99893 * 21 19 17 25 25 C 1.47021 * 125.64744 * 179.97438 * 12 10 9 26 26 H 1.09002 * 109.46845 * 298.60280 * 1 2 3 27 27 H 1.08997 * 109.47301 * 58.60545 * 1 2 3 28 28 H 1.09000 * 109.46945 * 178.60675 * 1 2 3 29 29 H 1.09000 * 110.48463 * 335.78186 * 4 2 1 30 30 H 1.08999 * 110.48787 * 98.29013 * 4 2 1 31 31 H 1.09000 * 110.75552 * 156.25899 * 5 4 2 32 32 H 1.09002 * 110.75480 * 279.43994 * 5 4 2 33 33 H 1.09001 * 110.49115 * 203.38063 * 6 5 4 34 34 H 1.09003 * 110.48721 * 80.73477 * 6 5 4 35 35 H 1.09007 * 109.47433 * 65.00229 * 9 7 2 36 36 H 1.09000 * 109.47529 * 304.99848 * 9 7 2 37 37 H 1.09002 * 110.36865 * 37.00989 * 13 12 10 38 38 H 1.08994 * 110.46657 * 274.73138 * 13 12 10 39 39 H 1.08998 * 111.00193 * 155.08783 * 14 13 12 40 40 H 1.09004 * 111.00194 * 278.93638 * 14 13 12 41 41 H 0.96702 * 114.00013 * 61.45358 * 16 15 14 42 42 H 0.97003 * 119.99636 * 179.97438 * 20 19 17 43 43 H 1.08996 * 109.88310 * 300.50411 * 25 12 10 44 44 H 1.09002 * 109.88672 * 61.51452 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0584 -0.7559 -1.2366 5 6 3.3136 -1.5009 -0.7186 6 6 2.8875 -1.9404 0.7041 7 6 2.0571 -0.7531 1.2340 8 1 2.6860 -0.0944 1.8329 9 6 0.8862 -1.2667 2.0742 10 6 1.4128 -1.8937 3.3394 11 8 2.6070 -1.9269 3.5482 12 7 0.5567 -2.4184 4.2384 13 6 -0.9118 -2.4471 4.1113 14 6 -1.3636 -3.6327 5.0001 15 6 -0.3707 -3.5279 6.1876 16 8 -0.8214 -2.5624 7.1398 17 6 -0.1763 -4.8722 6.8404 18 1 0.8029 -5.3276 6.8577 19 6 -1.2484 -5.5208 7.4156 20 7 -2.4407 -4.9660 7.3949 21 14 -1.0074 -7.1868 8.2253 22 1 -0.6717 -6.9963 9.6592 23 1 -2.2586 -7.9785 8.1107 24 1 0.0997 -7.9100 7.5496 25 6 0.9326 -3.0579 5.5078 26 1 -0.3633 0.4920 0.9023 27 1 -0.3634 0.5353 -0.8772 28 1 -0.3633 -1.0274 -0.0250 29 1 1.3142 -1.4666 -1.5961 30 1 2.3274 -0.0545 -2.0263 31 1 3.5325 -2.3683 -1.3415 32 1 4.1717 -0.8300 -0.6780 33 1 3.7638 -2.1032 1.3316 34 1 2.2772 -2.8423 0.6580 35 1 0.3290 -2.0105 1.5047 36 1 0.2284 -0.4352 2.3274 37 1 -1.1995 -2.6193 3.0741 38 1 -1.3440 -1.5147 4.4742 39 1 -2.3915 -3.4988 5.3372 40 1 -1.2466 -4.5811 4.4755 41 1 -1.6764 -2.7734 7.5392 42 1 -3.1951 -5.4225 7.7992 43 1 1.5795 -3.9135 5.3145 44 1 1.4482 -2.3403 6.1460 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592850419.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:17 Heat of formation + Delta-G solvation = -107.953997 kcal Electronic energy + Delta-G solvation = -23090.234929 eV Core-core repulsion = 19813.312393 eV Total energy + Delta-G solvation = -3276.922535 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.92167 -38.51450 -37.02411 -34.28953 -32.23141 -31.93908 -30.87062 -29.61432 -28.35192 -26.21367 -25.07899 -24.43599 -22.26105 -20.80984 -19.88711 -19.02896 -18.18637 -17.29231 -16.81182 -15.86377 -15.42854 -14.96813 -14.82457 -14.60805 -14.24147 -13.97012 -13.63425 -13.18187 -13.01404 -12.78798 -12.38986 -12.12503 -12.05089 -11.80542 -11.45852 -11.37900 -11.36060 -10.96014 -10.91141 -10.81510 -10.73535 -10.63079 -10.62569 -10.50296 -10.48337 -10.24314 -10.11622 -9.42319 -9.20410 -8.67914 -8.23765 -7.96630 -6.29873 -4.37285 3.14457 3.19667 3.26894 3.30568 3.59999 4.26251 4.52354 4.55390 4.66569 4.95985 5.06884 5.19375 5.26054 5.32442 5.40147 5.48093 5.52211 5.58100 5.63752 5.73611 5.74570 5.79620 5.90010 5.92280 5.92934 5.98640 6.02900 6.10983 6.16714 6.26590 6.34409 6.41935 6.46560 6.52285 6.71532 6.91329 6.98848 7.28896 7.34263 7.72066 8.01792 8.17704 8.64732 8.71546 9.29119 9.38045 10.77667 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.031618 B = 0.003807 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.347527 B = 7352.548988 C = 7599.001561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.094 4.094 3 H 0.070 0.930 4 C -0.119 4.119 5 C -0.127 4.127 6 C -0.112 4.112 7 C -0.071 4.071 8 H 0.078 0.922 9 C -0.130 4.130 10 C 0.518 3.482 11 O -0.554 6.554 12 N -0.611 5.611 13 C 0.095 3.905 14 C -0.134 4.134 15 C 0.247 3.753 16 O -0.585 6.585 17 C -0.535 4.535 18 H 0.064 0.936 19 C 0.073 3.927 20 N -0.896 5.896 21 Si 0.902 3.098 22 H -0.278 1.278 23 H -0.285 1.285 24 H -0.272 1.272 25 C 0.123 3.877 26 H 0.058 0.942 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.087 0.913 40 H 0.066 0.934 41 H 0.382 0.618 42 H 0.268 0.732 43 H 0.070 0.930 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.001 7.317 -14.428 16.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.112 4.112 3 H 0.089 0.911 4 C -0.157 4.157 5 C -0.165 4.165 6 C -0.150 4.150 7 C -0.090 4.090 8 H 0.096 0.904 9 C -0.170 4.170 10 C 0.307 3.693 11 O -0.434 6.434 12 N -0.344 5.344 13 C -0.027 4.027 14 C -0.173 4.173 15 C 0.206 3.794 16 O -0.394 6.394 17 C -0.573 4.573 18 H 0.082 0.918 19 C -0.130 4.130 20 N -0.536 5.536 21 Si 0.730 3.270 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.197 1.197 25 C 0.001 3.999 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.106 0.894 40 H 0.085 0.915 41 H 0.232 0.768 42 H 0.078 0.922 43 H 0.088 0.912 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.056 7.589 -14.472 16.624 hybrid contribution -0.692 -1.216 0.653 1.544 sum 2.364 6.373 -13.819 15.400 Atomic orbital electron populations 1.22020 0.95213 1.01985 1.01464 1.21804 0.95687 0.99199 0.94560 0.91139 1.22443 0.97519 0.98823 0.96901 1.22510 0.97497 0.99651 0.96816 1.22372 1.00227 0.97216 0.95155 1.21548 0.95385 0.97191 0.94890 0.90355 1.21933 0.99512 1.01334 0.94202 1.20361 0.85958 0.78491 0.84526 1.90637 1.15470 1.59149 1.78105 1.48691 1.07514 1.57323 1.20822 1.22485 0.79899 1.00602 0.99759 1.23292 1.01890 0.95033 0.97084 1.19461 0.87445 0.86902 0.85553 1.86136 1.42714 1.50571 1.59984 1.21525 0.95676 1.02633 1.37458 0.91799 1.24981 0.94858 0.98200 0.94950 1.69704 0.99787 1.39272 1.44797 0.86421 0.77727 0.83043 0.79843 1.20381 1.21045 1.19719 1.22033 0.98460 0.96421 0.82980 0.92263 0.93101 0.92225 0.91643 0.92116 0.91927 0.91742 0.90793 0.92083 0.89149 0.89053 0.92255 0.92048 0.89416 0.91510 0.76836 0.92242 0.91167 0.92306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 7.88 37.16 0.29 -1.05 16 2 C -0.09 -0.93 3.50 -89.50 -0.31 -1.24 16 3 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 4 C -0.12 -1.10 6.36 -25.07 -0.16 -1.26 16 5 C -0.13 -1.29 6.91 -24.75 -0.17 -1.47 16 6 C -0.11 -1.44 5.43 -25.07 -0.14 -1.57 16 7 C -0.07 -0.89 2.55 -89.50 -0.23 -1.12 16 8 H 0.08 1.10 7.92 -51.93 -0.41 0.69 16 9 C -0.13 -1.75 2.89 -27.88 -0.08 -1.83 16 10 C 0.52 9.55 7.63 -10.98 -0.08 9.47 16 11 O -0.55 -11.84 15.15 5.56 0.08 -11.75 16 12 N -0.61 -12.05 3.33 -170.52 -0.57 -12.61 16 13 C 0.10 1.70 6.68 -2.53 -0.02 1.68 16 14 C -0.13 -2.86 5.47 -24.58 -0.13 -3.00 16 15 C 0.25 5.93 0.84 -89.94 -0.08 5.85 16 16 O -0.59 -14.62 13.08 -35.23 -0.46 -15.08 16 17 C -0.53 -13.99 8.21 -34.44 -0.28 -14.27 16 18 H 0.06 1.69 7.57 -52.48 -0.40 1.29 16 19 C 0.07 1.86 5.28 -17.82 -0.09 1.76 16 20 N -0.90 -22.80 10.69 55.43 0.59 -22.21 16 21 Si 0.90 20.20 29.54 -169.99 -5.02 15.18 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 24 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 25 C 0.12 2.80 6.21 -3.06 -0.02 2.78 16 26 H 0.06 0.53 6.62 -51.93 -0.34 0.18 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.54 6.85 -51.93 -0.36 0.18 16 29 H 0.06 0.59 7.84 -51.93 -0.41 0.18 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 1.09 7.66 -51.93 -0.40 0.69 16 34 H 0.06 0.81 7.76 -51.93 -0.40 0.41 16 35 H 0.09 1.11 6.61 -51.93 -0.34 0.77 16 36 H 0.09 1.11 6.42 -51.93 -0.33 0.77 16 37 H 0.06 0.88 7.48 -51.93 -0.39 0.49 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.09 1.93 7.54 -51.93 -0.39 1.54 16 40 H 0.07 1.47 8.04 -51.93 -0.42 1.05 16 41 H 0.38 9.48 7.49 45.56 0.34 9.82 16 42 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 43 H 0.07 1.64 7.66 -51.93 -0.40 1.24 16 44 H 0.06 1.40 8.07 -51.93 -0.42 0.98 16 LS Contribution 337.63 15.07 5.09 5.09 Total: -1.00 -27.81 337.63 -8.52 -36.33 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -6.74 Total: 10.33 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: -1.50 Total: -5.26 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: 0.03 Total: -34.82 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -0.38 Total: -26.83 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -27.81 -8.52 -36.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592850419.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.622 kcal (2) G-P(sol) polarization free energy of solvation -27.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds