Wall clock time and date at job start Tue Mar 31 2020 06:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08995 * 110.05520 * 2 1 4 4 C 1.53870 * 110.03139 * 238.57836 * 2 1 3 5 5 C 1.54266 * 106.59962 * 240.71649 * 4 2 1 6 6 C 1.54885 * 104.19541 * 336.39144 * 5 4 2 7 7 C 1.54271 * 110.03112 * 121.41477 * 2 1 3 8 8 H 1.09002 * 110.59769 * 24.15399 * 7 2 1 9 9 C 1.53002 * 110.48494 * 261.57289 * 7 2 1 10 10 C 1.50695 * 109.47343 * 178.77105 * 9 7 2 11 11 O 1.21285 * 119.99538 * 359.97438 * 10 9 7 12 12 N 1.34778 * 120.00435 * 179.97438 * 10 9 7 13 13 C 1.47021 * 125.64564 * 359.95896 * 12 10 9 14 14 C 1.54423 * 107.28021 * 181.09748 * 13 12 10 15 15 C 1.55157 * 102.89567 * 22.18220 * 14 13 12 16 16 O 1.42903 * 110.99710 * 82.59668 * 15 14 13 17 17 C 1.50698 * 111.00494 * 206.40686 * 15 14 13 18 18 H 1.07998 * 119.99781 * 115.42481 * 17 15 14 19 19 C 1.37877 * 119.99911 * 295.42002 * 17 15 14 20 20 N 1.31512 * 120.00138 * 0.02562 * 19 17 15 21 21 Si 1.86803 * 119.99654 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47205 * 90.00120 * 21 19 17 23 23 H 1.48501 * 109.46919 * 210.00015 * 21 19 17 24 24 H 1.48496 * 109.47312 * 330.00047 * 21 19 17 25 25 C 1.47420 * 125.64823 * 180.02562 * 12 10 9 26 26 H 1.09001 * 109.46519 * 298.58712 * 1 2 3 27 27 H 1.08995 * 109.46863 * 58.58403 * 1 2 3 28 28 H 1.08996 * 109.46928 * 178.58751 * 1 2 3 29 29 H 1.09003 * 110.03446 * 121.43086 * 4 2 1 30 30 H 1.09007 * 110.03317 * 359.97438 * 4 2 1 31 31 H 1.09003 * 110.48584 * 217.70803 * 5 4 2 32 32 H 1.09007 * 110.48725 * 95.07179 * 5 4 2 33 33 H 1.08999 * 110.75517 * 279.62510 * 6 5 4 34 34 H 1.09005 * 110.75923 * 156.25773 * 6 5 4 35 35 H 1.08998 * 109.47406 * 58.77023 * 9 7 2 36 36 H 1.09001 * 109.46989 * 298.77420 * 9 7 2 37 37 H 1.08997 * 109.88077 * 300.51243 * 13 12 10 38 38 H 1.08998 * 109.87830 * 61.51972 * 13 12 10 39 39 H 1.09007 * 110.72220 * 263.85041 * 14 13 12 40 40 H 1.09004 * 110.76099 * 140.54281 * 14 13 12 41 41 H 0.96700 * 114.00311 * 64.58367 * 16 15 14 42 42 H 0.97002 * 119.99390 * 180.02562 * 20 19 17 43 43 H 1.09000 * 110.36806 * 36.99833 * 25 12 10 44 44 H 1.09002 * 110.45754 * 274.72101 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9039 1.0239 0.0000 4 6 2.0571 -0.7536 -1.2336 5 6 2.8875 -1.9407 -0.7034 6 6 3.3137 -1.5008 0.7192 7 6 2.0585 -0.7555 1.2369 8 1 1.3152 -1.4658 1.5989 9 6 2.4393 0.2298 2.3438 10 6 2.9233 -0.5325 3.5503 11 8 2.9596 -1.7446 3.5272 12 7 3.3158 0.1325 4.6549 13 6 3.3238 1.5937 4.8177 14 6 3.8753 1.8950 6.2283 15 6 4.6764 0.6105 6.5686 16 8 5.9826 0.6535 5.9905 17 6 4.7551 0.4019 8.0590 18 1 4.2840 -0.4593 8.5093 19 6 5.4286 1.3105 8.8476 20 7 6.0019 2.3594 8.2993 21 14 5.5267 1.0514 10.6950 22 1 6.7344 0.2504 11.0191 23 1 5.6090 2.3686 11.3758 24 1 4.3148 0.3294 11.1587 25 6 3.8093 -0.4846 5.8994 26 1 -0.3632 0.4918 0.9024 27 1 -0.3633 0.5356 -0.8770 28 1 -0.3633 -1.0273 -0.0253 29 1 2.6868 -0.0955 -1.8325 30 1 1.2229 -1.1198 -1.8321 31 1 3.7637 -2.1039 -1.3309 32 1 2.2771 -2.8427 -0.6569 33 1 4.1710 -0.8291 0.6752 34 1 3.5325 -2.3678 1.3425 35 1 1.5678 0.8252 2.6159 36 1 3.2319 0.8878 1.9877 37 1 3.9672 2.0471 4.0637 38 1 2.3102 1.9828 4.7225 39 1 3.0607 2.0406 6.9379 40 1 4.5315 2.7651 6.2089 41 1 6.5460 1.3558 6.3434 42 1 6.4761 2.9983 8.8542 43 1 4.4147 -1.3624 5.6734 44 1 2.9755 -0.7562 6.5467 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592850420.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:20 Heat of formation + Delta-G solvation = -113.846826 kcal Electronic energy + Delta-G solvation = -22939.729485 eV Core-core repulsion = 19662.551417 eV Total energy + Delta-G solvation = -3277.178068 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.77873 -38.42881 -36.99731 -34.26322 -32.19516 -31.59990 -31.20201 -29.70307 -28.31897 -26.40056 -25.15417 -24.05248 -22.16472 -20.59273 -19.75481 -19.44384 -18.60680 -17.20298 -16.48895 -15.72089 -15.31710 -14.98800 -14.91444 -14.52337 -14.08143 -14.00341 -13.63492 -13.20102 -12.95574 -12.91731 -12.44454 -12.20792 -11.90898 -11.88880 -11.54544 -11.34926 -11.32197 -10.95222 -10.92063 -10.85159 -10.73452 -10.62524 -10.54329 -10.48331 -10.43565 -10.40153 -10.04157 -9.42961 -9.20937 -8.69037 -8.22639 -7.94264 -6.30698 -4.38388 3.15871 3.19153 3.26518 3.29724 3.61314 4.25437 4.53701 4.60793 4.68213 4.95129 5.09857 5.22633 5.27794 5.31674 5.42685 5.50619 5.55623 5.58745 5.64058 5.71046 5.78383 5.82835 5.84973 5.89366 5.96835 6.02627 6.04462 6.13255 6.13731 6.32177 6.34975 6.43222 6.47185 6.57142 6.67485 6.89026 6.99208 7.29018 7.32330 7.72004 7.99990 8.20123 8.63558 8.72911 9.30109 9.41846 10.76930 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.040435 B = 0.003538 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.311603 B = 7911.528834 C = 8037.944631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 H 0.071 0.929 4 C -0.119 4.119 5 C -0.125 4.125 6 C -0.118 4.118 7 C -0.070 4.070 8 H 0.081 0.919 9 C -0.128 4.128 10 C 0.522 3.478 11 O -0.554 6.554 12 N -0.609 5.609 13 C 0.100 3.900 14 C -0.138 4.138 15 C 0.248 3.752 16 O -0.583 6.583 17 C -0.535 4.535 18 H 0.065 0.935 19 C 0.073 3.927 20 N -0.897 5.897 21 Si 0.903 3.097 22 H -0.278 1.278 23 H -0.285 1.285 24 H -0.272 1.272 25 C 0.120 3.880 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.057 0.943 38 H 0.052 0.948 39 H 0.067 0.933 40 H 0.084 0.916 41 H 0.382 0.618 42 H 0.268 0.732 43 H 0.069 0.931 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.866 0.194 -14.105 16.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.114 4.114 3 H 0.090 0.910 4 C -0.157 4.157 5 C -0.163 4.163 6 C -0.155 4.155 7 C -0.088 4.088 8 H 0.099 0.901 9 C -0.168 4.168 10 C 0.311 3.689 11 O -0.433 6.433 12 N -0.342 5.342 13 C -0.023 4.023 14 C -0.176 4.176 15 C 0.207 3.793 16 O -0.392 6.392 17 C -0.574 4.574 18 H 0.083 0.917 19 C -0.130 4.130 20 N -0.536 5.536 21 Si 0.730 3.270 22 H -0.204 1.204 23 H -0.211 1.211 24 H -0.197 1.197 25 C -0.002 4.002 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.107 0.893 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.086 0.914 40 H 0.103 0.897 41 H 0.233 0.767 42 H 0.078 0.922 43 H 0.088 0.912 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.012 -0.820 -14.481 16.570 hybrid contribution 0.296 0.701 1.409 1.601 sum -7.716 -0.119 -13.073 15.180 Atomic orbital electron populations 1.21882 0.95173 1.01696 1.01367 1.21828 0.95525 0.99445 0.94578 0.91019 1.22211 0.99247 0.97165 0.97068 1.22358 0.99227 0.97831 0.96868 1.22559 0.96827 1.00854 0.95260 1.21804 0.98122 0.96131 0.92784 0.90055 1.21704 1.02257 0.98974 0.93892 1.20224 0.77744 0.87780 0.83198 1.90631 1.56014 1.13982 1.82673 1.48648 1.63162 1.07997 1.14346 1.22166 0.99350 0.80349 1.00428 1.23202 1.00504 1.02191 0.91733 1.19600 0.80632 0.88405 0.90641 1.86124 1.26356 1.59123 1.67637 1.21474 1.35214 1.09446 0.91240 0.91708 1.24988 0.94219 0.94334 0.99453 1.69652 1.35258 1.12381 1.36327 0.86411 0.78762 0.77597 0.84185 1.20389 1.21053 1.19700 1.22332 0.96787 0.97582 0.83492 0.92716 0.92974 0.92660 0.92130 0.92026 0.92064 0.91880 0.92031 0.90195 0.89529 0.89305 0.92503 0.92968 0.91405 0.89725 0.76692 0.92173 0.91237 0.91253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 8.84 37.16 0.33 -0.97 16 2 C -0.10 -0.96 3.07 -89.50 -0.27 -1.24 16 3 H 0.07 0.70 7.84 -51.93 -0.41 0.29 16 4 C -0.12 -1.13 6.46 -25.62 -0.17 -1.30 16 5 C -0.13 -1.34 6.83 -25.07 -0.17 -1.51 16 6 C -0.12 -1.56 5.63 -24.74 -0.14 -1.70 16 7 C -0.07 -0.89 2.00 -88.96 -0.18 -1.06 16 8 H 0.08 1.14 7.73 -51.93 -0.40 0.74 16 9 C -0.13 -1.76 4.25 -27.88 -0.12 -1.88 16 10 C 0.52 9.71 7.63 -10.99 -0.08 9.63 16 11 O -0.55 -11.87 14.76 5.55 0.08 -11.79 16 12 N -0.61 -12.05 3.33 -170.48 -0.57 -12.61 16 13 C 0.10 1.79 6.49 -3.01 -0.02 1.77 16 14 C -0.14 -2.92 5.52 -24.84 -0.14 -3.05 16 15 C 0.25 5.96 0.88 -89.64 -0.08 5.88 16 16 O -0.58 -14.88 13.17 -35.23 -0.46 -15.35 16 17 C -0.54 -13.89 8.25 -34.44 -0.28 -14.17 16 18 H 0.06 1.68 7.78 -52.49 -0.41 1.27 16 19 C 0.07 1.85 5.29 -17.82 -0.09 1.75 16 20 N -0.90 -22.87 10.76 55.43 0.60 -22.27 16 21 Si 0.90 20.06 29.54 -169.99 -5.02 15.04 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 25 C 0.12 2.70 6.08 -2.54 -0.02 2.68 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.53 7.67 -51.93 -0.40 0.13 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 33 H 0.06 0.83 8.02 -51.93 -0.42 0.41 16 34 H 0.08 1.26 7.06 -51.93 -0.37 0.89 16 35 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.09 1.14 8.10 -51.93 -0.42 0.72 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.07 1.45 8.03 -51.92 -0.42 1.03 16 40 H 0.08 1.87 7.68 -51.93 -0.40 1.47 16 41 H 0.38 9.76 7.25 45.56 0.33 10.09 16 42 H 0.27 6.56 8.31 -40.82 -0.34 6.23 16 43 H 0.07 1.67 8.04 -51.93 -0.42 1.26 16 44 H 0.07 1.52 8.02 -51.93 -0.42 1.10 16 LS Contribution 344.91 15.07 5.20 5.20 Total: -1.00 -27.76 344.91 -8.69 -36.45 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -7.08 Total: 10.51 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -1.43 Total: -5.18 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: 0.03 Total: -34.88 kcal Atomic # 8 Polarization: -26.75 SS G_CDS: -0.38 Total: -27.13 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -27.76 -8.69 -36.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592850420.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.399 kcal (2) G-P(sol) polarization free energy of solvation -27.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds