Wall clock time and date at job start Tue Mar 31 2020 06:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 110.01836 * 2 1 4 4 C 1.54271 * 110.07413 * 238.58347 * 2 1 3 5 5 C 1.54884 * 104.19567 * 264.30098 * 4 2 1 6 6 C 1.54963 * 102.77877 * 322.08398 * 5 4 2 7 7 C 1.53868 * 110.03621 * 121.39088 * 2 1 3 8 8 H 1.09008 * 110.03277 * 0.02562 * 7 2 1 9 9 C 1.52997 * 110.03648 * 238.62263 * 7 2 1 10 10 C 1.50703 * 109.47238 * 175.69066 * 9 7 2 11 11 O 1.21278 * 120.00341 * 359.97438 * 10 9 7 12 12 N 1.34778 * 119.99809 * 179.97438 * 10 9 7 13 13 C 1.47430 * 125.64764 * 0.02667 * 12 10 9 14 14 C 1.54910 * 104.82843 * 204.08963 * 13 12 10 15 15 C 1.55160 * 101.58440 * 322.98828 * 14 13 12 16 16 O 1.42902 * 110.72244 * 277.14444 * 15 14 13 17 17 C 1.50700 * 110.72285 * 153.86316 * 15 14 13 18 18 H 1.07995 * 119.99729 * 5.09727 * 17 15 14 19 19 C 1.37876 * 119.99941 * 185.09010 * 17 15 14 20 20 N 1.31520 * 119.99533 * 183.78807 * 19 17 15 21 21 Si 1.86794 * 120.00172 * 3.79053 * 19 17 15 22 22 H 1.48507 * 109.47196 * 84.82592 * 21 19 17 23 23 H 1.48506 * 109.47296 * 204.82577 * 21 19 17 24 24 H 1.48504 * 109.47332 * 324.82536 * 21 19 17 25 25 C 1.47018 * 125.64835 * 179.97438 * 12 10 9 26 26 H 1.08995 * 109.46734 * 298.60880 * 1 2 3 27 27 H 1.09002 * 109.46961 * 58.60803 * 1 2 3 28 28 H 1.08995 * 109.46966 * 178.60974 * 1 2 3 29 29 H 1.09003 * 110.48474 * 22.98110 * 4 2 1 30 30 H 1.08996 * 110.48596 * 145.49042 * 4 2 1 31 31 H 1.09005 * 110.75329 * 80.37295 * 5 4 2 32 32 H 1.08994 * 110.76050 * 203.55751 * 5 4 2 33 33 H 1.08996 * 110.47438 * 279.23173 * 6 5 4 34 34 H 1.09003 * 110.53197 * 156.56301 * 6 5 4 35 35 H 1.08998 * 109.47769 * 55.68559 * 9 7 2 36 36 H 1.09002 * 109.46893 * 295.68612 * 9 7 2 37 37 H 1.08997 * 110.36768 * 85.25407 * 13 12 10 38 38 H 1.08995 * 110.36498 * 322.92670 * 13 12 10 39 39 H 1.09000 * 111.00383 * 81.06104 * 14 13 12 40 40 H 1.09003 * 111.00350 * 204.88011 * 14 13 12 41 41 H 0.96703 * 113.99591 * 298.54125 * 16 15 14 42 42 H 0.97003 * 119.99523 * 180.02562 * 20 19 17 43 43 H 1.09002 * 109.88174 * 59.56407 * 25 12 10 44 44 H 1.09002 * 110.01456 * 298.47423 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0241 0.0000 4 6 2.0595 -0.7553 -1.2366 5 6 2.3300 -2.1897 -0.7185 6 6 2.8883 -1.9403 0.7054 7 6 2.0572 -0.7530 1.2340 8 1 1.2230 -1.1188 1.8327 9 6 2.9399 0.1716 2.0747 10 6 3.3627 -0.5438 3.3319 11 8 2.9939 -1.6811 3.5357 12 7 4.1507 0.0802 4.2298 13 6 4.6688 1.4552 4.1092 14 6 5.9429 1.4774 4.9900 15 6 5.5192 0.5683 6.1738 16 8 4.7664 1.3094 7.1362 17 6 6.7249 -0.0699 6.8143 18 1 7.7174 0.2004 6.4855 19 6 6.5608 -0.9986 7.8200 20 7 7.6126 -1.5001 8.4299 21 14 4.8447 -1.5445 8.3163 22 1 4.3954 -2.6404 7.4205 23 1 4.8660 -2.0297 9.7197 24 1 3.9083 -0.3975 8.2033 25 6 4.6349 -0.4971 5.4921 26 1 -0.3632 0.4921 0.9022 27 1 -0.3633 0.5353 -0.8773 28 1 -0.3633 -1.0273 -0.0249 29 1 1.3075 -0.7700 -2.0255 30 1 2.9807 -0.2979 -1.5974 31 1 1.4053 -2.7653 -0.6749 32 1 3.0676 -2.6933 -1.3431 33 1 3.9448 -1.6761 0.6597 34 1 2.7405 -2.8189 1.3333 35 1 2.3794 1.0686 2.3381 36 1 3.8236 0.4509 1.5009 37 1 3.9366 2.1707 4.4833 38 1 4.9207 1.6760 3.0720 39 1 6.7938 1.0533 4.4569 40 1 6.1635 2.4884 5.3326 41 1 5.2542 2.0414 7.5379 42 1 7.4971 -2.1538 9.1373 43 1 5.2231 -1.3921 5.2889 44 1 3.7916 -0.7463 6.1362 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592850421.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:22 Heat of formation + Delta-G solvation = -100.490756 kcal Electronic energy + Delta-G solvation = -23152.180968 eV Core-core repulsion = 19875.582063 eV Total energy + Delta-G solvation = -3276.598905 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.96576 -38.65800 -37.26623 -34.53212 -32.44794 -31.66755 -31.09190 -30.06864 -28.63721 -26.63491 -25.27019 -23.91401 -22.65716 -20.69531 -19.81323 -19.40621 -18.88563 -17.24982 -16.66507 -15.92126 -15.69287 -15.24266 -14.96886 -14.63552 -14.26438 -14.00151 -13.54315 -13.31099 -13.09146 -12.77921 -12.73297 -12.57841 -12.16678 -12.14491 -11.90850 -11.70533 -11.39352 -11.00649 -10.97833 -10.86885 -10.74215 -10.65886 -10.61924 -10.55927 -10.47687 -10.29753 -10.15495 -9.38917 -9.06699 -8.74609 -8.47820 -8.09748 -6.23827 -4.36340 3.03819 3.31780 3.41259 3.52186 3.62691 4.42217 4.46641 4.51588 4.61969 4.90086 5.07122 5.13225 5.17469 5.21587 5.24830 5.29793 5.32674 5.44823 5.50054 5.54199 5.64614 5.69478 5.70327 5.75421 5.84091 5.88675 5.95139 5.99323 6.07834 6.09380 6.10378 6.26554 6.36817 6.47812 6.51469 6.54032 6.63234 6.77079 7.04191 7.47271 8.02105 8.17502 8.59507 8.71085 8.87757 9.39600 10.86322 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.028423 B = 0.004277 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.876343 B = 6544.664077 C = 6807.088407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.095 4.095 3 H 0.071 0.929 4 C -0.120 4.120 5 C -0.126 4.126 6 C -0.113 4.113 7 C -0.072 4.072 8 H 0.080 0.920 9 C -0.128 4.128 10 C 0.519 3.481 11 O -0.547 6.547 12 N -0.613 5.613 13 C 0.102 3.898 14 C -0.146 4.146 15 C 0.215 3.785 16 O -0.573 6.573 17 C -0.552 4.552 18 H 0.081 0.919 19 C 0.091 3.909 20 N -0.885 5.885 21 Si 0.864 3.136 22 H -0.279 1.279 23 H -0.295 1.295 24 H -0.228 1.228 25 C 0.113 3.887 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.365 0.635 42 H 0.268 0.732 43 H 0.082 0.918 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.138 6.298 -16.648 20.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 H 0.089 0.911 4 C -0.157 4.157 5 C -0.164 4.164 6 C -0.151 4.151 7 C -0.091 4.091 8 H 0.099 0.901 9 C -0.168 4.168 10 C 0.308 3.692 11 O -0.425 6.425 12 N -0.347 5.347 13 C -0.021 4.021 14 C -0.184 4.184 15 C 0.175 3.825 16 O -0.380 6.380 17 C -0.590 4.590 18 H 0.099 0.901 19 C -0.115 4.115 20 N -0.521 5.521 21 Si 0.691 3.309 22 H -0.205 1.205 23 H -0.222 1.222 24 H -0.151 1.151 25 C -0.009 4.009 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.212 0.788 42 H 0.077 0.923 43 H 0.100 0.900 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.781 5.104 -16.620 20.457 hybrid contribution -0.204 0.058 0.578 0.616 sum -10.986 5.161 -16.042 20.116 Atomic orbital electron populations 1.21870 0.95059 1.01779 1.01354 1.21817 0.95686 0.99279 0.94540 0.91082 1.22419 1.00543 0.95843 0.96909 1.22523 1.00664 0.96463 0.96706 1.22394 0.98822 0.98628 0.95238 1.21621 0.97953 0.94645 0.94879 0.90144 1.21810 1.01084 0.99497 0.94433 1.20327 0.78046 0.86536 0.84295 1.90667 1.55852 1.18329 1.77634 1.48717 1.49146 1.15435 1.21389 1.22329 0.96506 0.83521 0.99788 1.23331 0.96065 1.00913 0.98126 1.19971 0.89001 0.88007 0.85561 1.86519 1.44593 1.47892 1.58955 1.21203 0.92317 1.25146 1.20293 0.90146 1.24966 0.97114 0.94701 0.94714 1.69920 1.29927 1.28755 1.23490 0.87221 0.86126 0.80374 0.77196 1.20488 1.22234 1.15120 1.22552 0.97452 0.97716 0.83190 0.92709 0.92938 0.92607 0.91909 0.91788 0.91774 0.91903 0.92047 0.90724 0.89404 0.89205 0.91675 0.91603 0.90246 0.90600 0.78783 0.92264 0.90017 0.92308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 8.83 37.16 0.33 -0.92 16 2 C -0.09 -0.90 3.15 -89.50 -0.28 -1.18 16 3 H 0.07 0.62 7.67 -51.93 -0.40 0.22 16 4 C -0.12 -1.06 6.37 -25.07 -0.16 -1.22 16 5 C -0.13 -1.27 6.91 -24.70 -0.17 -1.44 16 6 C -0.11 -1.44 5.40 -25.03 -0.14 -1.58 16 7 C -0.07 -0.88 2.20 -89.51 -0.20 -1.08 16 8 H 0.08 1.11 7.48 -51.92 -0.39 0.73 16 9 C -0.13 -1.65 3.84 -27.88 -0.11 -1.75 16 10 C 0.52 9.44 7.63 -10.98 -0.08 9.36 16 11 O -0.55 -11.87 15.11 5.56 0.08 -11.79 16 12 N -0.61 -11.71 3.33 -170.52 -0.57 -12.28 16 13 C 0.10 1.57 6.68 -2.53 -0.02 1.55 16 14 C -0.15 -2.57 6.22 -24.58 -0.15 -2.72 16 15 C 0.21 4.77 0.68 -89.93 -0.06 4.70 16 16 O -0.57 -12.33 10.48 -35.23 -0.37 -12.70 16 17 C -0.55 -14.69 8.72 -34.44 -0.30 -14.99 16 18 H 0.08 2.29 8.03 -52.49 -0.42 1.86 16 19 C 0.09 2.56 5.47 -17.82 -0.10 2.46 16 20 N -0.89 -26.41 13.96 55.43 0.77 -25.64 16 21 Si 0.86 22.09 23.99 -169.99 -4.08 18.01 16 22 H -0.28 -7.29 7.11 56.52 0.40 -6.89 16 23 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 24 H -0.23 -5.73 5.40 56.52 0.31 -5.42 16 25 C 0.11 2.59 4.40 -3.06 -0.01 2.58 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.50 7.84 -51.93 -0.41 0.09 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.80 7.77 -51.93 -0.40 0.40 16 34 H 0.07 1.12 7.63 -51.93 -0.40 0.72 16 35 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.09 1.01 7.73 -51.93 -0.40 0.61 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.07 0.81 7.48 -51.93 -0.39 0.42 16 39 H 0.08 1.43 8.04 -51.93 -0.42 1.01 16 40 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.37 6.58 9.10 45.56 0.41 7.00 16 42 H 0.27 7.56 8.31 -40.82 -0.34 7.23 16 43 H 0.08 2.05 7.64 -51.93 -0.40 1.65 16 44 H 0.06 1.46 5.67 -51.93 -0.29 1.17 16 LS Contribution 336.63 15.07 5.07 5.07 Total: -1.00 -32.04 336.63 -7.47 -39.50 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -6.93 Total: 6.05 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: -1.45 Total: -6.23 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: 0.21 Total: -37.92 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: -0.29 Total: -24.49 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.08 Total: 18.01 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.04 -7.47 -39.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592850421.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.987 kcal (2) G-P(sol) polarization free energy of solvation -32.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds