Wall clock time and date at job start Tue Mar 31 2020 06:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 110.01836 * 2 1 4 4 C 1.54271 * 110.07413 * 238.58347 * 2 1 3 5 5 C 1.54884 * 104.19567 * 264.30098 * 4 2 1 6 6 C 1.54963 * 102.77877 * 322.08398 * 5 4 2 7 7 C 1.53868 * 110.03621 * 121.39088 * 2 1 3 8 8 H 1.09008 * 110.03277 * 0.02562 * 7 2 1 9 9 C 1.52997 * 110.03648 * 238.62263 * 7 2 1 10 10 C 1.50703 * 109.47238 * 175.69066 * 9 7 2 11 11 O 1.21278 * 120.00341 * 359.97438 * 10 9 7 12 12 N 1.34778 * 119.99809 * 179.97438 * 10 9 7 13 13 C 1.47430 * 125.64764 * 0.02667 * 12 10 9 14 14 C 1.54910 * 104.82843 * 204.08963 * 13 12 10 15 15 C 1.55160 * 101.58440 * 322.98828 * 14 13 12 16 16 O 1.42902 * 110.72244 * 277.14444 * 15 14 13 17 17 C 1.50700 * 110.72285 * 153.86316 * 15 14 13 18 18 H 1.07995 * 119.99729 * 5.09727 * 17 15 14 19 19 C 1.37876 * 119.99941 * 185.09010 * 17 15 14 20 20 N 1.31520 * 119.99533 * 183.78807 * 19 17 15 21 21 Si 1.86794 * 120.00172 * 3.79053 * 19 17 15 22 22 H 1.48507 * 109.47196 * 84.82592 * 21 19 17 23 23 H 1.48506 * 109.47296 * 204.82577 * 21 19 17 24 24 H 1.48504 * 109.47332 * 324.82536 * 21 19 17 25 25 C 1.47018 * 125.64835 * 179.97438 * 12 10 9 26 26 H 1.08995 * 109.46734 * 298.60880 * 1 2 3 27 27 H 1.09002 * 109.46961 * 58.60803 * 1 2 3 28 28 H 1.08995 * 109.46966 * 178.60974 * 1 2 3 29 29 H 1.09003 * 110.48474 * 22.98110 * 4 2 1 30 30 H 1.08996 * 110.48596 * 145.49042 * 4 2 1 31 31 H 1.09005 * 110.75329 * 80.37295 * 5 4 2 32 32 H 1.08994 * 110.76050 * 203.55751 * 5 4 2 33 33 H 1.08996 * 110.47438 * 279.23173 * 6 5 4 34 34 H 1.09003 * 110.53197 * 156.56301 * 6 5 4 35 35 H 1.08998 * 109.47769 * 55.68559 * 9 7 2 36 36 H 1.09002 * 109.46893 * 295.68612 * 9 7 2 37 37 H 1.08997 * 110.36768 * 85.25407 * 13 12 10 38 38 H 1.08995 * 110.36498 * 322.92670 * 13 12 10 39 39 H 1.09000 * 111.00383 * 81.06104 * 14 13 12 40 40 H 1.09003 * 111.00350 * 204.88011 * 14 13 12 41 41 H 0.96703 * 113.99591 * 298.54125 * 16 15 14 42 42 H 0.97003 * 119.99523 * 180.02562 * 20 19 17 43 43 H 1.09002 * 109.88174 * 59.56407 * 25 12 10 44 44 H 1.09002 * 110.01456 * 298.47423 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0241 0.0000 4 6 2.0595 -0.7553 -1.2366 5 6 2.3300 -2.1897 -0.7185 6 6 2.8883 -1.9403 0.7054 7 6 2.0572 -0.7530 1.2340 8 1 1.2230 -1.1188 1.8327 9 6 2.9399 0.1716 2.0747 10 6 3.3627 -0.5438 3.3319 11 8 2.9939 -1.6811 3.5357 12 7 4.1507 0.0802 4.2298 13 6 4.6688 1.4552 4.1092 14 6 5.9429 1.4774 4.9900 15 6 5.5192 0.5683 6.1738 16 8 4.7664 1.3094 7.1362 17 6 6.7249 -0.0699 6.8143 18 1 7.7174 0.2004 6.4855 19 6 6.5608 -0.9986 7.8200 20 7 7.6126 -1.5001 8.4299 21 14 4.8447 -1.5445 8.3163 22 1 4.3954 -2.6404 7.4205 23 1 4.8660 -2.0297 9.7197 24 1 3.9083 -0.3975 8.2033 25 6 4.6349 -0.4971 5.4921 26 1 -0.3632 0.4921 0.9022 27 1 -0.3633 0.5353 -0.8773 28 1 -0.3633 -1.0273 -0.0249 29 1 1.3075 -0.7700 -2.0255 30 1 2.9807 -0.2979 -1.5974 31 1 1.4053 -2.7653 -0.6749 32 1 3.0676 -2.6933 -1.3431 33 1 3.9448 -1.6761 0.6597 34 1 2.7405 -2.8189 1.3333 35 1 2.3794 1.0686 2.3381 36 1 3.8236 0.4509 1.5009 37 1 3.9366 2.1707 4.4833 38 1 4.9207 1.6760 3.0720 39 1 6.7938 1.0533 4.4569 40 1 6.1635 2.4884 5.3326 41 1 5.2542 2.0414 7.5379 42 1 7.4971 -2.1538 9.1373 43 1 5.2231 -1.3921 5.2889 44 1 3.7916 -0.7463 6.1362 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592850421.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:22 Heat of formation + Delta-G solvation = -123.444069 kcal Electronic energy + Delta-G solvation = -23153.176298 eV Core-core repulsion = 19875.582063 eV Total energy + Delta-G solvation = -3277.594235 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.32694 -39.83717 -38.67989 -36.16578 -34.57131 -32.79988 -31.86594 -31.53261 -30.25850 -27.83171 -26.62869 -25.18355 -24.03118 -21.67754 -21.48129 -20.36892 -20.16500 -19.20736 -18.05025 -17.41417 -16.93633 -16.68787 -16.29319 -15.95049 -15.84758 -15.32628 -14.96158 -14.62455 -14.46748 -14.16734 -14.01159 -13.63187 -13.52426 -13.44717 -13.27237 -13.14161 -12.82033 -12.71079 -12.42489 -12.12546 -12.02099 -11.83030 -11.76040 -11.61320 -11.44838 -11.41966 -11.26180 -11.07307 -10.92202 -10.76347 -10.27509 -9.64673 -8.45394 -6.56807 1.26384 1.32673 1.52861 1.64419 2.03370 2.27743 2.92027 3.41390 3.58868 3.69073 3.76128 3.80333 3.90768 4.21431 4.26325 4.33676 4.39443 4.41001 4.47563 4.52085 4.59087 4.68270 4.71145 4.80035 4.83086 4.83336 4.93955 4.99653 5.05136 5.13032 5.16859 5.22083 5.25220 5.28815 5.34490 5.39044 5.42219 5.50877 5.51973 5.63385 6.03457 6.54822 6.62554 7.14201 7.17275 7.30560 8.68750 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.028423 B = 0.004277 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.876343 B = 6544.664077 C = 6807.088407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 H 0.091 0.909 4 C -0.114 4.114 5 C -0.123 4.123 6 C -0.118 4.118 7 C -0.073 4.073 8 H 0.056 0.944 9 C -0.116 4.116 10 C 0.510 3.490 11 O -0.594 6.594 12 N -0.619 5.619 13 C 0.105 3.895 14 C -0.139 4.139 15 C 0.212 3.788 16 O -0.577 6.577 17 C -0.544 4.544 18 H 0.055 0.945 19 C 0.046 3.954 20 N -0.929 5.929 21 Si 0.915 3.085 22 H -0.297 1.297 23 H -0.295 1.295 24 H -0.217 1.217 25 C 0.116 3.884 26 H 0.051 0.949 27 H 0.069 0.931 28 H 0.046 0.954 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.037 0.963 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.086 0.914 38 H 0.110 0.890 39 H 0.071 0.929 40 H 0.106 0.894 41 H 0.382 0.618 42 H 0.268 0.732 43 H 0.045 0.955 44 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.470 9.407 -19.250 24.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.106 4.106 3 H 0.109 0.891 4 C -0.152 4.152 5 C -0.161 4.161 6 C -0.155 4.155 7 C -0.092 4.092 8 H 0.074 0.926 9 C -0.155 4.155 10 C 0.301 3.699 11 O -0.475 6.475 12 N -0.352 5.352 13 C -0.017 4.017 14 C -0.177 4.177 15 C 0.172 3.828 16 O -0.386 6.386 17 C -0.582 4.582 18 H 0.074 0.926 19 C -0.155 4.155 20 N -0.568 5.568 21 Si 0.742 3.258 22 H -0.225 1.225 23 H -0.222 1.222 24 H -0.140 1.140 25 C -0.007 4.007 26 H 0.070 0.930 27 H 0.088 0.912 28 H 0.065 0.935 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.056 0.944 35 H 0.135 0.865 36 H 0.136 0.864 37 H 0.104 0.896 38 H 0.128 0.872 39 H 0.090 0.910 40 H 0.125 0.875 41 H 0.231 0.769 42 H 0.077 0.923 43 H 0.063 0.937 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -12.117 8.266 -19.233 24.188 hybrid contribution 0.254 -0.942 1.375 1.686 sum -11.864 7.324 -17.858 22.656 Atomic orbital electron populations 1.21875 0.94602 1.01511 1.02091 1.21789 0.96026 0.99821 0.92959 0.89061 1.22419 1.01519 0.94294 0.96934 1.22507 1.00578 0.97944 0.95047 1.22370 0.98929 0.97729 0.96497 1.21628 0.96991 0.94695 0.95864 0.92575 1.21891 1.02477 0.99672 0.91484 1.21463 0.76877 0.86214 0.85321 1.90653 1.57392 1.20721 1.78715 1.48865 1.49440 1.16911 1.20002 1.22583 0.95449 0.81556 1.02066 1.23271 0.97034 1.01225 0.96164 1.19802 0.87169 0.88937 0.86940 1.86452 1.44449 1.48508 1.59154 1.21568 0.93231 1.24147 1.19226 0.92643 1.25573 0.99193 0.95351 0.95431 1.70016 1.31466 1.30349 1.24922 0.86446 0.83473 0.79671 0.76220 1.22469 1.22177 1.13959 1.22129 0.96161 0.97164 0.85288 0.92950 0.91157 0.93532 0.90424 0.90686 0.92000 0.91209 0.92466 0.94386 0.86470 0.86449 0.89567 0.87166 0.91045 0.87531 0.76854 0.92295 0.93681 0.94743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 8.83 71.98 0.64 -1.44 16 2 C -0.09 -1.34 3.15 -10.07 -0.03 -1.37 16 3 H 0.09 1.09 7.67 -2.39 -0.02 1.07 16 4 C -0.11 -1.62 6.37 31.67 0.20 -1.42 16 5 C -0.12 -2.30 6.91 31.91 0.22 -2.08 16 6 C -0.12 -2.96 5.40 31.70 0.17 -2.79 16 7 C -0.07 -1.65 2.20 -10.07 -0.02 -1.67 16 8 H 0.06 1.54 7.48 -2.38 -0.02 1.53 16 9 C -0.12 -2.58 3.84 29.85 0.11 -2.46 16 10 C 0.51 17.98 7.63 87.66 0.67 18.65 16 11 O -0.59 -26.56 15.11 -3.02 -0.05 -26.61 16 12 N -0.62 -22.59 3.33 -811.78 -2.70 -25.29 16 13 C 0.10 2.76 6.68 86.85 0.58 3.34 16 14 C -0.14 -4.45 6.22 31.99 0.20 -4.25 16 15 C 0.21 9.20 0.68 -10.35 -0.01 9.19 16 16 O -0.58 -23.63 10.48 -148.98 -1.56 -25.19 16 17 C -0.54 -29.32 8.72 25.60 0.22 -29.10 16 18 H 0.06 3.22 8.03 -2.91 -0.02 3.19 16 19 C 0.05 2.64 5.47 84.65 0.46 3.10 16 20 N -0.93 -57.15 13.96 21.45 0.30 -56.85 16 21 Si 0.91 47.23 23.99 68.60 1.65 48.87 16 22 H -0.30 -16.08 7.11 99.48 0.71 -15.37 16 23 H -0.29 -14.99 7.11 99.48 0.71 -14.28 16 24 H -0.22 -10.71 5.40 99.48 0.54 -10.17 16 25 C 0.12 5.38 4.40 86.73 0.38 5.76 16 26 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.08 0.91 7.84 -2.39 -0.02 0.90 16 30 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 32 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.06 1.45 7.77 -2.39 -0.02 1.43 16 34 H 0.04 1.20 7.63 -2.39 -0.02 1.19 16 35 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.12 2.03 7.73 -2.39 -0.02 2.01 16 37 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.11 2.01 7.48 -2.39 -0.02 1.99 16 39 H 0.07 2.41 8.04 -2.39 -0.02 2.39 16 40 H 0.11 2.77 8.14 -2.39 -0.02 2.76 16 41 H 0.38 12.75 9.10 -74.06 -0.67 12.07 16 42 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 43 H 0.04 2.37 7.64 -2.39 -0.02 2.35 16 44 H 0.03 1.74 5.67 -2.39 -0.01 1.73 16 Total: -1.00 -74.06 336.63 1.57 -72.49 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: 0.13 Total: 19.12 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: 3.80 Total: -6.54 kcal Atomic # 7 Polarization: -79.74 SS G_CDS: -2.40 Total: -82.14 kcal Atomic # 8 Polarization: -50.19 SS G_CDS: -1.61 Total: -51.80 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 1.65 Total: 48.87 kcal Total: -74.06 1.57 -72.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592850421.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.951 kcal (2) G-P(sol) polarization free energy of solvation -74.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds