Wall clock time and date at job start Tue Mar 31 2020 06:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.05296 * 2 1 4 4 C 1.54370 * 110.04431 * 238.53440 * 2 1 3 5 5 C 1.54888 * 104.19883 * 217.08852 * 4 2 1 6 6 C 1.54891 * 102.74898 * 37.96885 * 5 4 2 7 7 C 1.53869 * 110.03296 * 121.42340 * 2 1 3 8 8 C 1.53005 * 110.03241 * 238.61491 * 7 2 1 9 9 C 1.50694 * 110.03338 * 359.97438 * 7 2 1 10 10 O 1.21279 * 120.00300 * 15.88231 * 9 7 2 11 11 N 1.34780 * 120.00056 * 195.88243 * 9 7 2 12 12 C 1.47423 * 125.64586 * 359.95791 * 11 9 7 13 13 C 1.55124 * 104.94180 * 204.03808 * 12 11 9 14 14 C 1.55154 * 101.48601 * 323.22182 * 13 12 11 15 15 O 1.42904 * 110.72334 * 276.83116 * 14 13 12 16 16 C 1.50701 * 110.71975 * 153.73029 * 14 13 12 17 17 H 1.08002 * 120.00299 * 2.65557 * 16 14 13 18 18 C 1.37879 * 120.00154 * 182.91852 * 16 14 13 19 19 N 1.31509 * 120.00050 * 187.99918 * 18 16 14 20 20 Si 1.86804 * 119.99729 * 8.01053 * 18 16 14 21 21 H 1.48493 * 109.47034 * 93.50413 * 20 18 16 22 22 H 1.48505 * 109.46605 * 213.50764 * 20 18 16 23 23 H 1.48496 * 109.47058 * 333.49963 * 20 18 16 24 24 C 1.47021 * 125.64872 * 180.02562 * 11 9 7 25 25 H 1.09002 * 109.46933 * 290.99728 * 1 2 3 26 26 H 1.08996 * 109.47618 * 50.99552 * 1 2 3 27 27 H 1.08997 * 109.47457 * 171.00227 * 1 2 3 28 28 H 1.09006 * 110.46513 * 98.41954 * 4 2 1 29 29 H 1.09003 * 110.62337 * 335.83825 * 4 2 1 30 30 H 1.09004 * 110.75861 * 279.65966 * 5 4 2 31 31 H 1.09001 * 110.91690 * 156.35750 * 5 4 2 32 32 H 1.08996 * 110.49108 * 203.38437 * 6 5 4 33 33 H 1.09002 * 110.59816 * 80.78984 * 6 5 4 34 34 H 1.08998 * 109.47241 * 180.69334 * 8 7 2 35 35 H 1.08998 * 109.46753 * 300.69498 * 8 7 2 36 36 H 1.09003 * 109.46495 * 60.69212 * 8 7 2 37 37 H 1.08999 * 110.37191 * 323.00176 * 12 11 9 38 38 H 1.09006 * 110.36765 * 85.33013 * 12 11 9 39 39 H 1.09004 * 111.16106 * 205.13167 * 13 12 11 40 40 H 1.08994 * 110.93806 * 81.22038 * 13 12 11 41 41 H 0.96701 * 113.99752 * 296.15635 * 15 14 13 42 42 H 0.97004 * 119.99918 * 180.02562 * 19 18 16 43 43 H 1.08999 * 109.88209 * 59.49382 * 24 11 9 44 44 H 1.08997 * 110.01038 * 298.39601 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9037 1.0239 0.0000 4 6 2.0591 -0.7570 -1.2370 5 6 3.3145 -1.5013 -0.7185 6 6 2.8882 -1.9407 0.7043 7 6 2.0571 -0.7537 1.2336 8 6 2.9399 0.1705 2.0747 9 6 0.9038 -1.2588 2.0616 10 8 -0.2107 -1.3042 1.5854 11 7 1.1108 -1.6602 3.3315 12 6 2.4079 -1.6592 4.0323 13 6 2.2617 -2.7291 5.1459 14 6 0.7836 -2.5300 5.5735 15 8 0.6686 -1.4581 6.5116 16 6 0.2191 -3.8031 6.1496 17 1 0.8491 -4.6739 6.2553 18 6 -1.1031 -3.8577 6.5367 19 7 -1.5563 -4.9103 7.1819 20 14 -2.2506 -2.4369 6.1445 21 1 -2.9502 -2.7051 4.8625 22 1 -3.2501 -2.2929 7.2333 23 1 -1.4636 -1.1832 6.0262 24 6 0.0808 -2.1729 4.2468 25 1 -0.3633 0.3682 0.9595 26 1 -0.3634 0.6467 -0.7985 27 1 -0.3634 -1.0150 -0.1607 28 1 2.3302 -0.0554 -2.0260 29 1 1.3162 -1.4680 -1.5987 30 1 4.1716 -0.8292 -0.6746 31 1 3.5371 -2.3686 -1.3402 32 1 3.7643 -2.1029 1.3320 33 1 2.2790 -2.8435 0.6604 34 1 3.3181 -0.3757 2.9389 35 1 3.7774 0.5209 1.4715 36 1 2.3532 1.0246 2.4129 37 1 3.2100 -1.9314 3.3463 38 1 2.6001 -0.6809 4.4730 39 1 2.9391 -2.5282 5.9759 40 1 2.4215 -3.7308 4.7470 41 1 1.1256 -1.6174 7.3488 42 1 -2.4867 -4.9489 7.4539 43 1 -0.3831 -3.0629 3.8216 44 1 -0.6760 -1.4085 4.4225 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592851620.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:54 Heat of formation + Delta-G solvation = -44.702766 kcal Electronic energy + Delta-G solvation = -24240.625403 eV Core-core repulsion = 20966.445647 eV Total energy + Delta-G solvation = -3274.179756 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.84760 -38.39021 -36.84397 -34.85925 -32.45559 -31.74707 -31.00807 -29.85396 -28.46572 -26.29582 -25.26884 -24.33965 -22.57000 -20.86213 -20.69184 -19.67123 -18.67287 -17.31332 -16.46959 -15.65888 -15.40761 -15.35759 -14.83016 -14.40842 -14.11292 -13.87493 -13.57865 -13.52656 -13.02710 -12.77686 -12.72738 -12.56600 -12.10482 -11.89922 -11.84347 -11.57612 -11.44743 -11.15980 -10.99748 -10.84691 -10.75598 -10.67454 -10.56441 -10.45212 -10.30610 -10.13095 -9.96765 -9.07051 -8.74939 -8.57257 -8.37961 -7.95266 -6.25173 -4.36686 2.99703 3.31293 3.41068 3.52505 3.59754 4.38242 4.40813 4.53987 4.64721 5.00095 5.06582 5.15466 5.18496 5.21669 5.30210 5.33585 5.41360 5.55052 5.55744 5.66829 5.70007 5.74038 5.80414 5.83978 5.89051 5.99621 6.05402 6.10613 6.13166 6.21056 6.25775 6.31531 6.48078 6.52080 6.56557 6.64680 6.78678 6.94585 7.05671 7.47172 8.05905 8.16184 8.63053 8.70865 8.88752 9.38758 10.84916 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.026263 B = 0.005684 C = 0.005246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.881504 B = 4925.089761 C = 5335.934687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.077 4.077 3 H 0.071 0.929 4 C -0.119 4.119 5 C -0.121 4.121 6 C -0.108 4.108 7 C -0.075 4.075 8 C -0.164 4.164 9 C 0.523 3.477 10 O -0.533 6.533 11 N -0.607 5.607 12 C 0.098 3.902 13 C -0.148 4.148 14 C 0.217 3.783 15 O -0.574 6.574 16 C -0.553 4.553 17 H 0.080 0.920 18 C 0.091 3.909 19 N -0.884 5.884 20 Si 0.863 3.137 21 H -0.282 1.282 22 H -0.293 1.293 23 H -0.226 1.226 24 C 0.108 3.892 25 H 0.064 0.936 26 H 0.015 0.985 27 H 0.080 0.920 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.366 0.634 42 H 0.267 0.733 43 H 0.080 0.920 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.696 8.802 -11.642 18.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.096 4.096 3 H 0.089 0.911 4 C -0.156 4.156 5 C -0.159 4.159 6 C -0.146 4.146 7 C -0.079 4.079 8 C -0.220 4.220 9 C 0.312 3.688 10 O -0.412 6.412 11 N -0.340 5.340 12 C -0.025 4.025 13 C -0.187 4.187 14 C 0.177 3.823 15 O -0.380 6.380 16 C -0.590 4.590 17 H 0.098 0.902 18 C -0.114 4.114 19 N -0.519 5.519 20 Si 0.690 3.310 21 H -0.209 1.209 22 H -0.220 1.220 23 H -0.149 1.149 24 C -0.013 4.013 25 H 0.083 0.917 26 H 0.034 0.966 27 H 0.099 0.901 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.213 0.787 42 H 0.077 0.923 43 H 0.098 0.902 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.581 8.981 -12.362 18.586 hybrid contribution -0.421 0.299 0.410 0.659 sum 10.160 9.280 -11.952 18.226 Atomic orbital electron populations 1.22331 0.93112 1.02573 0.99966 1.21740 0.97485 0.98146 0.92227 0.91053 1.22490 0.97180 0.98960 0.96989 1.22461 0.97763 0.99895 0.95781 1.22386 0.98929 0.96824 0.96443 1.21329 0.94202 0.96779 0.95544 1.22479 0.99256 0.99571 1.00744 1.20336 0.89980 0.78079 0.80376 1.90832 1.26343 1.54751 1.69290 1.48793 1.10540 1.62721 1.11909 1.22631 0.85750 0.99614 0.94496 1.23411 0.99626 0.98290 0.97339 1.19924 0.90137 0.86461 0.85806 1.86490 1.77822 1.45206 1.28478 1.21231 0.96930 0.97021 1.43836 0.90195 1.24962 0.98235 0.95572 0.92675 1.69935 1.16095 1.29586 1.36324 0.87244 0.80478 0.85563 0.77739 1.20873 1.22020 1.14928 1.22714 0.90825 0.98749 0.89044 0.91725 0.96621 0.90137 0.91843 0.91282 0.91466 0.91442 0.90933 0.91094 0.89767 0.91947 0.92383 0.91066 0.91430 0.90641 0.90355 0.78736 0.92304 0.90160 0.91827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.90 7.39 37.16 0.27 -1.62 16 2 C -0.08 -0.99 3.16 -89.45 -0.28 -1.27 16 3 H 0.07 0.83 7.67 -51.93 -0.40 0.43 16 4 C -0.12 -1.28 6.36 -25.02 -0.16 -1.44 16 5 C -0.12 -1.17 6.91 -24.74 -0.17 -1.35 16 6 C -0.11 -1.27 5.40 -25.07 -0.14 -1.40 16 7 C -0.08 -1.02 0.61 -154.54 -0.09 -1.11 16 8 C -0.16 -1.87 7.49 37.16 0.28 -1.60 16 9 C 0.52 9.46 6.13 -10.99 -0.07 9.39 16 10 O -0.53 -11.19 11.23 5.56 0.06 -11.13 16 11 N -0.61 -11.42 3.31 -170.39 -0.56 -11.98 16 12 C 0.10 1.50 4.80 -2.41 -0.01 1.49 16 13 C -0.15 -2.60 6.24 -24.47 -0.15 -2.75 16 14 C 0.22 4.77 0.68 -89.94 -0.06 4.71 16 15 O -0.57 -12.27 10.60 -35.23 -0.37 -12.64 16 16 C -0.55 -14.59 8.69 -34.44 -0.30 -14.89 16 17 H 0.08 2.26 8.02 -52.49 -0.42 1.84 16 18 C 0.09 2.56 5.46 -17.82 -0.10 2.46 16 19 N -0.88 -26.21 13.96 55.43 0.77 -25.44 16 20 Si 0.86 21.89 24.54 -169.99 -4.17 17.72 16 21 H -0.28 -7.32 7.11 56.52 0.40 -6.92 16 22 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 23 H -0.23 -5.63 4.68 56.52 0.26 -5.36 16 24 C 0.11 2.45 4.40 -3.06 -0.01 2.43 16 25 H 0.06 1.15 6.23 -51.98 -0.32 0.83 16 26 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.08 1.39 6.18 -52.16 -0.32 1.07 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.80 7.73 -51.93 -0.40 0.40 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.75 6.95 -51.93 -0.36 0.38 16 33 H 0.07 0.95 7.85 -51.93 -0.41 0.54 16 34 H 0.08 0.94 3.45 -51.93 -0.18 0.76 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.90 5.28 -51.93 -0.27 0.63 16 38 H 0.07 0.98 7.26 -51.93 -0.38 0.61 16 39 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 40 H 0.08 1.40 8.03 -51.93 -0.42 0.99 16 41 H 0.37 6.63 9.09 45.56 0.41 7.05 16 42 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 43 H 0.08 1.97 7.62 -51.93 -0.40 1.58 16 44 H 0.06 1.55 5.30 -51.93 -0.27 1.28 16 LS Contribution 318.24 15.07 4.80 4.80 Total: -1.00 -31.15 318.24 -6.84 -37.99 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -6.37 Total: 7.63 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: -0.99 Total: -6.94 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: 0.21 Total: -37.42 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -0.31 Total: -23.77 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.17 Total: 17.72 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.15 -6.84 -37.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592851620.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.715 kcal (2) G-P(sol) polarization free energy of solvation -31.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds