Wall clock time and date at job start Tue Mar 31 2020 06:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 110.05556 * 2 1 4 4 C 1.54268 * 110.03206 * 238.58554 * 2 1 3 5 5 C 1.54889 * 104.19276 * 264.32840 * 4 2 1 6 6 C 1.54889 * 102.74860 * 322.05612 * 5 4 2 7 7 C 1.53874 * 110.02975 * 121.42089 * 2 1 3 8 8 C 1.53004 * 110.02978 * 238.61789 * 7 2 1 9 9 C 1.50704 * 110.03234 * 359.97438 * 7 2 1 10 10 O 1.21276 * 119.99399 * 107.09594 * 9 7 2 11 11 N 1.34774 * 120.00228 * 287.09617 * 9 7 2 12 12 C 1.47019 * 125.64952 * 355.82209 * 11 9 7 13 13 C 1.54325 * 107.27302 * 181.07926 * 12 11 9 14 14 C 1.55157 * 102.94024 * 22.19126 * 13 12 11 15 15 O 1.42897 * 111.00483 * 82.57375 * 14 13 12 16 16 C 1.50699 * 111.00337 * 206.42462 * 14 13 12 17 17 H 1.07999 * 120.00308 * 117.52505 * 16 14 13 18 18 C 1.37883 * 120.00040 * 297.52357 * 16 14 13 19 19 N 1.31511 * 119.99824 * 355.36150 * 18 16 14 20 20 Si 1.86798 * 120.00060 * 175.36276 * 18 16 14 21 21 H 1.48496 * 109.47172 * 94.99206 * 20 18 16 22 22 H 1.48498 * 109.46869 * 214.99506 * 20 18 16 23 23 H 1.48502 * 109.47051 * 334.99450 * 20 18 16 24 24 C 1.47428 * 125.64654 * 175.84046 * 11 9 7 25 25 H 1.09000 * 109.47275 * 303.60631 * 1 2 3 26 26 H 1.09007 * 109.46624 * 63.60155 * 1 2 3 27 27 H 1.08994 * 109.47223 * 183.59710 * 1 2 3 28 28 H 1.08995 * 110.48669 * 23.00601 * 4 2 1 29 29 H 1.09000 * 110.48497 * 145.64953 * 4 2 1 30 30 H 1.08993 * 110.75938 * 80.37601 * 5 4 2 31 31 H 1.09004 * 110.75369 * 203.74318 * 5 4 2 32 32 H 1.08995 * 110.48554 * 279.26550 * 6 5 4 33 33 H 1.08997 * 110.48130 * 156.62639 * 6 5 4 34 34 H 1.09001 * 109.46902 * 164.61277 * 8 7 2 35 35 H 1.09002 * 109.46780 * 284.60894 * 8 7 2 36 36 H 1.08999 * 109.47306 * 44.61285 * 8 7 2 37 37 H 1.09009 * 109.88052 * 300.49592 * 12 11 9 38 38 H 1.08996 * 109.88267 * 61.50334 * 12 11 9 39 39 H 1.09003 * 110.72064 * 140.55235 * 13 12 11 40 40 H 1.08999 * 110.71671 * 263.65003 * 13 12 11 41 41 H 0.96699 * 114.00278 * 72.56898 * 15 14 13 42 42 H 0.96993 * 119.99983 * 180.02562 * 19 18 16 43 43 H 1.08994 * 110.36461 * 274.68862 * 24 11 9 44 44 H 1.09003 * 110.36445 * 37.01790 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9039 1.0239 0.0000 4 6 2.0585 -0.7554 -1.2369 5 6 2.3280 -2.1901 -0.7192 6 6 2.8874 -1.9407 0.7035 7 6 2.0571 -0.7537 1.2337 8 6 2.9399 0.1706 2.0748 9 6 0.9037 -1.2588 2.0617 10 8 0.6380 -2.4420 2.0732 11 7 0.1675 -0.3956 2.7894 12 6 0.4303 1.0435 2.9351 13 6 -0.6512 1.6137 3.8769 14 6 -1.1264 0.3608 4.6591 15 8 -0.2498 0.0756 5.7509 16 6 -2.5453 0.5292 5.1381 17 1 -3.3174 -0.1381 4.7845 18 6 -2.8578 1.5351 6.0278 19 7 -1.9042 2.2896 6.5287 20 14 -4.6356 1.8262 6.5217 21 1 -4.9230 1.1024 7.7861 22 1 -4.8622 3.2802 6.7211 23 1 -5.5350 1.3273 5.4505 24 6 -1.0344 -0.7383 3.5713 25 1 -0.3634 0.5688 0.8559 26 1 -0.3633 0.4570 -0.9206 27 1 -0.3633 -1.0256 0.0645 28 1 1.3062 -0.7695 -2.0255 29 1 2.9812 -0.3000 -1.5966 30 1 1.4031 -2.7651 -0.6753 31 1 3.0675 -2.6931 -1.3423 32 1 3.9439 -1.6767 0.6571 33 1 2.7401 -2.8198 1.3308 34 1 3.0836 -0.2651 3.0636 35 1 3.9071 0.2919 1.5871 36 1 2.4578 1.1433 2.1729 37 1 1.4184 1.1979 3.3689 38 1 0.3725 1.5313 1.9621 39 1 -0.2221 2.3517 4.5547 40 1 -1.4707 2.0483 3.3045 41 1 -0.3256 0.6962 6.4886 42 1 -2.1239 2.9969 7.1549 43 1 -1.9193 -0.7177 2.9353 44 1 -0.9200 -1.7195 4.0322 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592851622.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:59 Heat of formation + Delta-G solvation = -88.724667 kcal Electronic energy + Delta-G solvation = -24248.572295 eV Core-core repulsion = 20972.483606 eV Total energy + Delta-G solvation = -3276.088689 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.70051 -37.95938 -36.62385 -34.44565 -32.19574 -31.65964 -31.08021 -29.53765 -28.13073 -26.28413 -25.20461 -24.19276 -22.53036 -20.91628 -20.08948 -19.59722 -18.16293 -17.23144 -16.23599 -15.61629 -15.39522 -15.06876 -14.91430 -14.33539 -14.01906 -13.64579 -13.39463 -12.96334 -12.71718 -12.57378 -12.39512 -12.28828 -11.96862 -11.88163 -11.66044 -11.36690 -11.31913 -11.22322 -10.95651 -10.79716 -10.63988 -10.58210 -10.50445 -10.45151 -10.35858 -10.24971 -9.95978 -9.40062 -9.10102 -8.67444 -8.21518 -7.88997 -6.31914 -4.39967 3.17046 3.17618 3.25766 3.29451 3.62490 4.24426 4.51649 4.59049 4.72416 4.95668 5.16309 5.27626 5.35205 5.39859 5.50906 5.57135 5.59097 5.64591 5.72286 5.78881 5.82916 5.87121 5.96550 6.00520 6.01809 6.10912 6.14075 6.19967 6.27208 6.32726 6.37329 6.45547 6.47171 6.56983 6.69213 6.90490 7.02998 7.32327 7.34946 7.71278 7.97900 8.23061 8.62875 8.75140 9.28943 9.45121 10.75209 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.033497 B = 0.004781 C = 0.004725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.692283 B = 5855.283961 C = 5924.038289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.079 4.079 3 H 0.077 0.923 4 C -0.119 4.119 5 C -0.122 4.122 6 C -0.105 4.105 7 C -0.078 4.078 8 C -0.152 4.152 9 C 0.542 3.458 10 O -0.557 6.557 11 N -0.603 5.603 12 C 0.088 3.912 13 C -0.138 4.138 14 C 0.249 3.751 15 O -0.585 6.585 16 C -0.538 4.538 17 H 0.065 0.935 18 C 0.073 3.927 19 N -0.895 5.895 20 Si 0.902 3.098 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.272 1.272 24 C 0.119 3.881 25 H 0.077 0.923 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.058 0.942 39 H 0.083 0.917 40 H 0.065 0.935 41 H 0.384 0.616 42 H 0.269 0.731 43 H 0.069 0.931 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.167 0.088 -11.580 14.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.097 4.097 3 H 0.095 0.905 4 C -0.156 4.156 5 C -0.159 4.159 6 C -0.143 4.143 7 C -0.081 4.081 8 C -0.209 4.209 9 C 0.331 3.669 10 O -0.436 6.436 11 N -0.335 5.335 12 C -0.034 4.034 13 C -0.177 4.177 14 C 0.209 3.791 15 O -0.394 6.394 16 C -0.576 4.576 17 H 0.083 0.917 18 C -0.130 4.130 19 N -0.535 5.535 20 Si 0.729 3.271 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.196 1.196 24 C -0.003 4.003 25 H 0.095 0.905 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.101 0.899 40 H 0.084 0.916 41 H 0.235 0.765 42 H 0.079 0.921 43 H 0.087 0.913 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.268 -0.918 -11.877 14.501 hybrid contribution -1.144 0.878 0.717 1.610 sum 7.125 -0.040 -11.160 13.241 Atomic orbital electron populations 1.22320 0.94649 1.02800 1.02667 1.21739 0.96203 0.98881 0.92917 0.90454 1.22442 1.00515 0.95779 0.96904 1.22462 1.01096 0.96569 0.95794 1.22353 0.97755 0.97524 0.96629 1.21435 0.94419 0.96983 0.95270 1.22286 0.99012 0.99775 0.99795 1.19848 0.82762 0.85320 0.78973 1.90623 1.70836 1.16215 1.65904 1.48524 1.28434 1.09095 1.47447 1.22604 1.00695 0.80861 0.99286 1.23168 0.96282 1.00705 0.97511 1.19574 0.88539 0.87516 0.83518 1.86104 1.64350 1.58221 1.30767 1.21490 0.93613 1.15210 1.27286 0.91692 1.24994 0.98070 0.94928 0.94979 1.69644 1.32244 1.20841 1.30737 0.86419 0.84210 0.77471 0.79014 1.20479 1.20970 1.19639 1.22350 0.85503 1.00195 0.92232 0.90455 0.92758 0.92353 0.91632 0.91711 0.91151 0.91840 0.91373 0.90170 0.92062 0.92065 0.90650 0.91413 0.92382 0.89851 0.91603 0.76477 0.92131 0.91313 0.91294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.35 7.72 37.16 0.29 -2.07 16 2 C -0.08 -0.99 2.66 -89.50 -0.24 -1.23 16 3 H 0.08 0.87 7.57 -51.93 -0.39 0.48 16 4 C -0.12 -1.30 6.37 -25.07 -0.16 -1.45 16 5 C -0.12 -1.46 6.91 -24.74 -0.17 -1.63 16 6 C -0.10 -1.40 5.63 -25.08 -0.14 -1.55 16 7 C -0.08 -1.13 0.62 -154.54 -0.10 -1.23 16 8 C -0.15 -1.97 7.04 37.16 0.26 -1.71 16 9 C 0.54 10.25 4.51 -10.98 -0.05 10.20 16 10 O -0.56 -12.32 15.75 5.56 0.09 -12.23 16 11 N -0.60 -11.77 2.40 -170.52 -0.41 -12.18 16 12 C 0.09 1.56 4.38 -3.07 -0.01 1.54 16 13 C -0.14 -2.91 5.49 -24.90 -0.14 -3.05 16 14 C 0.25 5.95 0.90 -89.62 -0.08 5.87 16 15 O -0.58 -14.94 13.22 -35.23 -0.47 -15.40 16 16 C -0.54 -13.83 8.26 -34.44 -0.28 -14.12 16 17 H 0.06 1.67 7.79 -52.49 -0.41 1.27 16 18 C 0.07 1.84 5.23 -17.82 -0.09 1.75 16 19 N -0.90 -22.72 10.76 55.43 0.60 -22.12 16 20 Si 0.90 19.90 29.54 -169.99 -5.02 14.88 16 21 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 23 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 24 C 0.12 2.66 6.10 -2.53 -0.02 2.64 16 25 H 0.08 1.19 4.11 -51.93 -0.21 0.98 16 26 H 0.05 0.65 8.13 -51.93 -0.42 0.23 16 27 H 0.06 0.94 7.23 -51.93 -0.38 0.57 16 28 H 0.06 0.68 7.83 -51.93 -0.41 0.27 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.77 7.59 -51.93 -0.39 0.37 16 33 H 0.08 1.25 7.01 -51.93 -0.36 0.89 16 34 H 0.06 0.89 8.03 -51.93 -0.42 0.47 16 35 H 0.06 0.65 7.72 -51.93 -0.40 0.25 16 36 H 0.07 0.95 4.93 -51.93 -0.26 0.69 16 37 H 0.07 1.15 5.62 -51.92 -0.29 0.86 16 38 H 0.06 0.89 5.64 -51.93 -0.29 0.60 16 39 H 0.08 1.85 7.70 -51.93 -0.40 1.45 16 40 H 0.07 1.39 8.04 -51.93 -0.42 0.97 16 41 H 0.38 9.89 7.12 45.56 0.32 10.22 16 42 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 43 H 0.07 1.49 8.03 -51.93 -0.42 1.08 16 44 H 0.07 1.66 8.00 -51.93 -0.42 1.25 16 LS Contribution 325.62 15.07 4.91 4.91 Total: -1.00 -27.73 325.62 -7.60 -35.33 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: -6.36 Total: 12.84 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -0.93 Total: -6.02 kcal Atomic # 7 Polarization: -34.49 SS G_CDS: 0.19 Total: -34.30 kcal Atomic # 8 Polarization: -27.25 SS G_CDS: -0.38 Total: -27.63 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -27.73 -7.60 -35.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592851622.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.394 kcal (2) G-P(sol) polarization free energy of solvation -27.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds