Wall clock time and date at job start Tue Mar 31 2020 06:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47104 * 2 1 4 4 C 1.53007 * 109.46685 * 240.00004 * 2 1 3 5 5 C 1.53005 * 109.46970 * 179.97438 * 4 2 1 6 6 C 1.53008 * 109.46627 * 60.00310 * 5 4 2 7 7 C 1.52998 * 109.47004 * 299.99433 * 6 5 4 8 8 C 1.53000 * 109.47168 * 120.00430 * 2 1 3 9 9 H 1.08999 * 109.47112 * 59.99373 * 8 2 1 10 10 C 1.50698 * 109.46871 * 299.99600 * 8 2 1 11 11 O 1.21286 * 119.99865 * 324.18159 * 10 8 2 12 12 N 1.34779 * 120.00059 * 144.18073 * 10 8 2 13 13 C 1.47019 * 125.64412 * 5.03195 * 12 10 8 14 14 C 1.54330 * 107.26953 * 181.01690 * 13 12 10 15 15 C 1.55156 * 102.93807 * 22.19391 * 14 13 12 16 16 O 1.42900 * 111.00420 * 82.60962 * 15 14 13 17 17 C 1.50698 * 111.00494 * 206.41760 * 15 14 13 18 18 H 1.08000 * 119.99977 * 118.54803 * 17 15 14 19 19 C 1.37876 * 120.00134 * 298.55455 * 17 15 14 20 20 N 1.31512 * 120.00206 * 359.97438 * 19 17 15 21 21 Si 1.86807 * 119.99956 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47208 * 59.99670 * 21 19 17 23 23 H 1.48502 * 109.46615 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.46910 * 299.99359 * 21 19 17 25 25 C 1.47421 * 125.64973 * 184.72157 * 12 10 8 26 26 H 1.09001 * 109.46944 * 299.99864 * 1 2 3 27 27 H 1.09003 * 109.47139 * 59.99856 * 1 2 3 28 28 H 1.09000 * 109.47104 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47347 * 299.99847 * 4 2 1 30 30 H 1.09003 * 109.47218 * 60.00189 * 4 2 1 31 31 H 1.09000 * 109.47151 * 300.00200 * 5 4 2 32 32 H 1.08993 * 109.47224 * 179.97438 * 5 4 2 33 33 H 1.09001 * 109.46440 * 179.97438 * 6 5 4 34 34 H 1.08999 * 109.47098 * 59.99655 * 6 5 4 35 35 H 1.09003 * 109.47029 * 180.02562 * 7 6 5 36 36 H 1.09000 * 109.47539 * 300.00579 * 7 6 5 37 37 H 1.08995 * 109.88312 * 300.43991 * 13 12 10 38 38 H 1.09003 * 109.88409 * 61.60453 * 13 12 10 39 39 H 1.09002 * 110.71355 * 140.55436 * 14 13 12 40 40 H 1.08995 * 110.72115 * 263.83184 * 14 13 12 41 41 H 0.96696 * 114.00272 * 61.44749 * 16 15 14 42 42 H 0.97003 * 120.00402 * 180.02562 * 20 19 17 43 43 H 1.09009 * 110.36333 * 274.75098 * 25 12 10 44 44 H 1.08996 * 110.36465 * 37.06898 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5700 -0.7208 -1.2497 6 6 4.0804 -1.4418 -0.0004 7 6 3.5706 -0.7205 1.2488 8 6 2.0400 -0.7213 1.2492 9 1 1.6766 -1.7490 1.2492 10 6 1.5378 -0.0109 2.4796 11 8 1.4361 1.1976 2.4830 12 7 1.2015 -0.7186 3.5763 13 6 1.3727 -2.1689 3.7459 14 6 0.8268 -2.5345 5.1423 15 6 -0.1384 -1.3610 5.4562 16 8 -1.4133 -1.5689 4.8453 17 6 -0.2813 -1.1620 6.9431 18 1 0.0192 -0.2280 7.3943 19 6 -0.7956 -2.1725 7.7276 20 7 -1.1619 -3.3099 7.1782 21 14 -0.9721 -1.9262 9.5709 22 1 -1.8730 -0.7751 9.8325 23 1 -1.5461 -3.1522 10.1814 24 1 0.3621 -1.6554 10.1640 25 6 0.6072 -0.1656 4.8069 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6766 -1.7490 -1.2493 30 1 1.6766 -0.2074 -2.1393 31 1 3.9330 0.3070 -1.2499 32 1 3.9333 -1.2350 -2.1394 33 1 5.1705 -1.4418 -0.0010 34 1 3.7174 -2.4695 -0.0002 35 1 3.9346 -1.2339 2.1388 36 1 3.9335 0.3073 1.2486 37 1 0.8116 -2.7007 2.9775 38 1 2.4297 -2.4275 3.6818 39 1 0.2860 -3.4804 5.1094 40 1 1.6342 -2.5759 5.8733 41 1 -1.8719 -2.3629 5.1524 42 1 -1.5241 -4.0207 7.7300 43 1 1.3876 0.2043 5.4720 44 1 -0.0948 0.6320 4.5638 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592852323.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:52 Heat of formation + Delta-G solvation = -116.558296 kcal Electronic energy + Delta-G solvation = -23554.978535 eV Core-core repulsion = 20277.682889 eV Total energy + Delta-G solvation = -3277.295646 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.13358 -38.17900 -36.80548 -34.26919 -32.55420 -32.23344 -31.23663 -29.56527 -28.28379 -26.54719 -25.16148 -23.36053 -22.05816 -21.31175 -20.11508 -19.52419 -18.53104 -17.19079 -16.67591 -15.43601 -15.13575 -14.95852 -14.56654 -14.45964 -14.20719 -14.12176 -13.79271 -13.30952 -12.81662 -12.72337 -12.38056 -12.20123 -11.92741 -11.85017 -11.68523 -11.48098 -11.35518 -11.30731 -11.22453 -10.91794 -10.86008 -10.63072 -10.51022 -10.44330 -10.37869 -10.08516 -10.02255 -9.40803 -9.11363 -8.68318 -8.23178 -7.94554 -6.29339 -4.37416 3.12674 3.21192 3.25975 3.29380 3.60181 4.26155 4.61078 4.65889 4.72609 4.97050 5.08262 5.13944 5.20818 5.37757 5.41902 5.46546 5.52529 5.56652 5.69020 5.75037 5.77738 5.85036 5.90713 5.96719 6.00463 6.02704 6.07088 6.12607 6.21924 6.22081 6.35000 6.42921 6.45898 6.51774 6.67261 6.90044 6.99335 7.29130 7.33553 7.72236 8.01712 8.19739 8.64434 8.72410 9.29716 9.38558 10.78001 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.034229 B = 0.004191 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.831600 B = 6678.987310 C = 6811.547527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.073 4.073 3 H 0.080 0.920 4 C -0.113 4.113 5 C -0.120 4.120 6 C -0.116 4.116 7 C -0.107 4.107 8 C -0.097 4.097 9 H 0.086 0.914 10 C 0.530 3.470 11 O -0.556 6.556 12 N -0.607 5.607 13 C 0.100 3.900 14 C -0.136 4.136 15 C 0.249 3.751 16 O -0.582 6.582 17 C -0.536 4.536 18 H 0.064 0.936 19 C 0.074 3.926 20 N -0.896 5.896 21 Si 0.902 3.098 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.275 1.275 25 C 0.120 3.880 26 H 0.061 0.939 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.057 0.943 38 H 0.052 0.948 39 H 0.086 0.914 40 H 0.067 0.933 41 H 0.380 0.620 42 H 0.268 0.732 43 H 0.070 0.930 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.754 -0.770 -13.104 15.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.092 4.092 3 H 0.098 0.902 4 C -0.150 4.150 5 C -0.158 4.158 6 C -0.154 4.154 7 C -0.145 4.145 8 C -0.118 4.118 9 H 0.105 0.895 10 C 0.318 3.682 11 O -0.436 6.436 12 N -0.339 5.339 13 C -0.023 4.023 14 C -0.175 4.175 15 C 0.208 3.792 16 O -0.391 6.391 17 C -0.575 4.575 18 H 0.082 0.918 19 C -0.129 4.129 20 N -0.535 5.535 21 Si 0.730 3.270 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.200 1.200 25 C -0.002 4.002 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.104 0.896 40 H 0.086 0.914 41 H 0.230 0.770 42 H 0.078 0.922 43 H 0.088 0.912 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.803 0.276 -13.428 15.533 hybrid contribution -0.266 -0.664 1.432 1.601 sum 7.537 -0.388 -11.996 14.172 Atomic orbital electron populations 1.21859 0.94930 1.01707 1.02226 1.20964 0.95816 0.99941 0.92489 0.90178 1.21608 0.95334 1.00710 0.97394 1.21557 0.95848 1.00812 0.97577 1.21520 1.00128 0.99425 0.94294 1.21447 0.93073 1.01636 0.98317 1.21347 0.96813 1.00535 0.93137 0.89542 1.20156 0.77496 0.87184 0.83321 1.90635 1.55455 1.14112 1.83356 1.48661 1.60773 1.09159 1.15305 1.22177 0.99097 0.80669 1.00393 1.23178 1.00286 1.02185 0.91825 1.19630 0.80950 0.88227 0.90368 1.86136 1.33627 1.50287 1.69011 1.21419 1.43397 1.01129 0.91519 0.91809 1.24975 0.93937 0.94640 0.99330 1.69705 1.42540 1.04774 1.36448 0.86485 0.78642 0.77681 0.84237 1.19994 1.21120 1.20046 1.22393 0.95968 0.97853 0.83967 0.91957 0.92758 0.92885 0.91922 0.91836 0.91932 0.92131 0.91839 0.91809 0.91620 0.91277 0.92500 0.92980 0.89553 0.91401 0.77029 0.92188 0.91198 0.91349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 8.93 37.16 0.33 -1.76 16 2 C -0.07 -0.97 1.94 -90.62 -0.18 -1.15 16 3 H 0.08 1.17 7.86 -51.93 -0.41 0.76 16 4 C -0.11 -1.16 5.20 -26.73 -0.14 -1.30 16 5 C -0.12 -1.12 5.92 -26.72 -0.16 -1.27 16 6 C -0.12 -1.13 5.92 -26.73 -0.16 -1.29 16 7 C -0.11 -1.32 5.19 -26.70 -0.14 -1.46 16 8 C -0.10 -1.40 1.70 -91.75 -0.16 -1.55 16 9 H 0.09 1.20 6.88 -51.93 -0.36 0.84 16 10 C 0.53 10.06 5.78 -10.99 -0.06 9.99 16 11 O -0.56 -12.26 16.08 5.55 0.09 -12.17 16 12 N -0.61 -12.11 3.32 -170.38 -0.57 -12.68 16 13 C 0.10 1.80 6.19 -3.06 -0.02 1.78 16 14 C -0.14 -2.90 5.38 -24.89 -0.13 -3.03 16 15 C 0.25 5.97 0.87 -89.51 -0.08 5.89 16 16 O -0.58 -14.71 13.17 -35.23 -0.46 -15.18 16 17 C -0.54 -13.93 8.27 -34.44 -0.28 -14.22 16 18 H 0.06 1.66 7.79 -52.49 -0.41 1.25 16 19 C 0.07 1.88 5.29 -17.82 -0.09 1.79 16 20 N -0.90 -22.80 10.76 55.43 0.60 -22.20 16 21 Si 0.90 20.09 29.54 -169.99 -5.02 15.07 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 23 H -0.29 -6.30 7.11 56.52 0.40 -5.89 16 24 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 25 C 0.12 2.71 6.08 -2.42 -0.01 2.70 16 26 H 0.06 1.07 6.85 -51.93 -0.36 0.71 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.97 7.63 -51.93 -0.40 0.57 16 38 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.09 1.91 7.55 -51.93 -0.39 1.52 16 40 H 0.07 1.47 8.03 -51.93 -0.42 1.05 16 41 H 0.38 9.54 7.56 45.56 0.34 9.88 16 42 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 43 H 0.07 1.55 8.04 -51.92 -0.42 1.13 16 44 H 0.07 1.65 8.08 -51.93 -0.42 1.23 16 LS Contribution 340.99 15.07 5.14 5.14 Total: -1.00 -27.89 340.99 -8.52 -36.41 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: -7.01 Total: 10.49 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -1.28 Total: -4.88 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: 0.03 Total: -34.88 kcal Atomic # 8 Polarization: -26.98 SS G_CDS: -0.37 Total: -27.35 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -27.89 -8.52 -36.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592852323.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.144 kcal (2) G-P(sol) polarization free energy of solvation -27.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds