Wall clock time and date at job start Tue Mar 31 2020 06:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 109.47022 * 2 1 4 4 C 1.53002 * 109.47132 * 239.99470 * 2 1 3 5 5 C 1.53000 * 109.46669 * 180.02562 * 4 2 1 6 6 C 1.52998 * 109.47219 * 60.00479 * 5 4 2 7 7 C 1.52999 * 109.47030 * 299.99732 * 6 5 4 8 8 C 1.52990 * 109.47289 * 60.00054 * 7 6 5 9 9 H 1.09001 * 109.47561 * 180.02562 * 8 7 6 10 10 C 1.50696 * 109.47388 * 60.00043 * 8 7 6 11 11 O 1.21280 * 120.00536 * 240.00346 * 10 8 7 12 12 N 1.34776 * 120.00145 * 60.00145 * 10 8 7 13 13 C 1.47427 * 125.64535 * 359.97392 * 12 10 8 14 14 C 1.54909 * 104.83126 * 155.91031 * 13 12 10 15 15 C 1.55155 * 101.58319 * 37.00899 * 14 13 12 16 16 O 1.42903 * 110.71521 * 82.86218 * 15 14 13 17 17 C 1.50694 * 110.72177 * 205.95503 * 15 14 13 18 18 H 1.07994 * 119.99866 * 116.15664 * 17 15 14 19 19 C 1.37880 * 120.00331 * 296.15939 * 17 15 14 20 20 N 1.31512 * 119.99598 * 0.02562 * 19 17 15 21 21 Si 1.86801 * 120.00162 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.46891 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.46861 * 120.00075 * 21 19 17 24 24 H 1.48497 * 109.47070 * 240.00268 * 21 19 17 25 25 C 1.47018 * 125.65556 * 180.02562 * 12 10 8 26 26 H 1.08992 * 109.47391 * 300.00450 * 1 2 3 27 27 H 1.09006 * 109.46922 * 60.00104 * 1 2 3 28 28 H 1.09001 * 109.47543 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46844 * 60.00509 * 4 2 1 30 30 H 1.09001 * 109.47105 * 300.00511 * 4 2 1 31 31 H 1.08991 * 109.47479 * 299.99949 * 5 4 2 32 32 H 1.09007 * 109.46515 * 180.02562 * 5 4 2 33 33 H 1.09004 * 109.47101 * 179.97438 * 6 5 4 34 34 H 1.09002 * 109.47220 * 59.99860 * 6 5 4 35 35 H 1.09001 * 109.46752 * 299.99888 * 7 6 5 36 36 H 1.09004 * 109.47188 * 180.02562 * 7 6 5 37 37 H 1.09000 * 110.36621 * 37.07017 * 13 12 10 38 38 H 1.09001 * 110.37051 * 274.75013 * 13 12 10 39 39 H 1.09002 * 111.00456 * 278.93003 * 14 13 12 40 40 H 1.09003 * 111.00112 * 155.08427 * 14 13 12 41 41 H 0.96700 * 114.00311 * 61.45661 * 16 15 14 42 42 H 0.97002 * 119.99961 * 180.02562 * 20 19 17 43 43 H 1.09002 * 109.88150 * 61.59780 * 25 12 10 44 44 H 1.09002 * 109.88190 * 300.44225 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5700 -0.7219 -1.2488 6 6 4.0795 -1.4434 0.0005 7 6 3.5694 -0.7222 1.2497 8 6 2.0395 -0.7216 1.2493 9 1 1.6761 -0.2074 2.1390 10 6 1.5366 -2.1422 1.2491 11 8 0.8394 -2.5386 0.3393 12 7 1.8616 -2.9723 2.2599 13 6 2.6977 -2.6236 3.4230 14 6 2.2733 -3.6210 4.5297 15 6 2.0286 -4.9135 3.7070 16 8 3.2578 -5.6030 3.4713 17 6 1.0413 -5.8118 4.4065 18 1 0.0895 -6.0304 3.9455 19 6 1.3531 -6.3546 5.6350 20 7 2.5120 -6.0879 6.1965 21 14 0.1290 -7.4676 6.5023 22 1 -1.0910 -7.6072 5.6673 23 1 0.7397 -8.8044 6.7148 24 1 -0.2351 -6.8754 7.8145 25 6 1.4420 -4.3758 2.3848 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.6768 -0.2076 -2.1392 30 1 1.6766 -1.7490 -1.2491 31 1 3.9337 0.3056 -1.2486 32 1 3.9334 -1.2354 -2.1390 33 1 5.1695 -1.4442 0.0006 34 1 3.7158 -2.4710 0.0003 35 1 3.9332 0.3054 1.2498 36 1 3.9327 -1.2360 2.1397 37 1 2.4997 -1.5994 3.7391 38 1 3.7534 -2.7500 3.1829 39 1 1.3582 -3.2921 5.0221 40 1 3.0749 -3.7649 5.2542 41 1 3.7065 -5.8939 4.2770 42 1 2.7316 -6.4701 7.0606 43 1 1.8281 -4.9542 1.5455 44 1 0.3540 -4.4366 2.4102 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592852325.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:54 Heat of formation + Delta-G solvation = -104.738913 kcal Electronic energy + Delta-G solvation = -23967.123081 eV Core-core repulsion = 20690.339963 eV Total energy + Delta-G solvation = -3276.783119 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.50492 -38.06947 -36.47721 -34.45974 -32.35891 -32.20455 -31.25645 -29.45133 -28.24990 -26.45632 -25.11091 -23.43517 -21.93276 -21.26744 -20.55767 -19.49833 -18.30086 -17.22130 -16.29368 -15.66850 -15.12528 -14.91552 -14.77407 -14.48602 -14.05953 -13.97026 -13.46199 -13.22223 -12.97659 -12.55096 -12.36984 -12.13357 -12.00233 -11.87381 -11.50736 -11.38163 -11.34840 -11.30029 -11.16960 -10.91479 -10.71658 -10.59705 -10.49106 -10.46413 -10.13647 -9.98697 -9.87874 -9.41194 -8.92647 -8.67411 -8.22801 -7.95076 -6.31005 -4.37724 3.11391 3.17656 3.26835 3.31583 3.58696 4.25733 4.67785 4.76498 4.83588 4.96599 5.13576 5.24981 5.29310 5.46960 5.51577 5.53702 5.58910 5.69390 5.72587 5.83299 5.88043 5.93274 5.94421 5.99655 6.06067 6.12574 6.22171 6.25731 6.33442 6.36133 6.43650 6.45623 6.61986 6.68712 6.78415 6.90403 6.99362 7.27382 7.32515 7.71828 8.01113 8.17505 8.64337 8.72262 9.29686 9.39833 10.77004 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.031502 B = 0.004657 C = 0.004416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.630071 B = 6011.229120 C = 6338.492409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.064 4.064 3 H 0.067 0.933 4 C -0.129 4.129 5 C -0.116 4.116 6 C -0.122 4.122 7 C -0.118 4.118 8 C -0.100 4.100 9 H 0.090 0.910 10 C 0.531 3.469 11 O -0.547 6.547 12 N -0.607 5.607 13 C 0.096 3.904 14 C -0.138 4.138 15 C 0.247 3.753 16 O -0.586 6.586 17 C -0.533 4.533 18 H 0.064 0.936 19 C 0.073 3.927 20 N -0.897 5.897 21 Si 0.902 3.098 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.282 1.282 25 C 0.123 3.877 26 H 0.044 0.956 27 H 0.047 0.953 28 H 0.086 0.914 29 H 0.053 0.947 30 H 0.094 0.906 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.059 0.941 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.086 0.914 41 H 0.383 0.617 42 H 0.268 0.732 43 H 0.059 0.941 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.612 11.955 -6.807 14.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.083 4.083 3 H 0.085 0.915 4 C -0.166 4.166 5 C -0.154 4.154 6 C -0.159 4.159 7 C -0.155 4.155 8 C -0.121 4.121 9 H 0.108 0.892 10 C 0.320 3.680 11 O -0.427 6.427 12 N -0.339 5.339 13 C -0.027 4.027 14 C -0.176 4.176 15 C 0.207 3.793 16 O -0.395 6.395 17 C -0.571 4.571 18 H 0.082 0.918 19 C -0.130 4.130 20 N -0.537 5.537 21 Si 0.730 3.270 22 H -0.196 1.196 23 H -0.207 1.207 24 H -0.208 1.208 25 C 0.001 3.999 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.105 0.895 29 H 0.072 0.928 30 H 0.113 0.887 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.104 0.896 41 H 0.234 0.766 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.168 11.867 -7.806 14.369 hybrid contribution -0.376 -0.599 1.349 1.523 sum 1.792 11.268 -6.457 13.110 Atomic orbital electron populations 1.22092 0.94990 1.04400 1.00325 1.20842 0.96011 0.97842 0.93627 0.91511 1.21861 0.94661 1.03689 0.96424 1.21522 0.96417 0.99903 0.97559 1.21538 1.00004 0.99959 0.94414 1.21664 0.93188 1.01321 0.99336 1.21334 0.96955 0.93650 1.00208 0.89210 1.20099 0.80132 0.86933 0.80830 1.90510 1.39321 1.77321 1.35517 1.48664 1.50176 1.12968 1.22081 1.22552 0.94420 0.98912 0.86796 1.23337 1.01842 0.96047 0.96411 1.19453 0.83457 0.88450 0.87930 1.86124 1.38076 1.77585 1.37711 1.21566 1.02471 1.29659 1.03452 0.91753 1.24975 0.95595 0.95700 0.96705 1.69651 1.21658 1.44575 1.17813 0.86367 0.81185 0.80237 0.79238 1.19588 1.20744 1.20840 1.22033 0.99042 0.79593 0.99207 0.93733 0.93390 0.89514 0.92787 0.88725 0.92611 0.92416 0.92031 0.91757 0.91307 0.90586 0.92228 0.91802 0.91507 0.89554 0.76613 0.92247 0.92260 0.91174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 8.89 37.16 0.33 -1.82 16 2 C -0.06 -0.83 2.47 -90.61 -0.22 -1.05 16 3 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 4 C -0.13 -1.72 4.93 -26.73 -0.13 -1.85 16 5 C -0.12 -1.39 5.92 -26.73 -0.16 -1.55 16 6 C -0.12 -1.58 5.70 -26.73 -0.15 -1.73 16 7 C -0.12 -1.46 5.27 -26.74 -0.14 -1.60 16 8 C -0.10 -1.39 1.89 -91.77 -0.17 -1.57 16 9 H 0.09 1.16 7.85 -51.93 -0.41 0.75 16 10 C 0.53 9.51 5.41 -10.99 -0.06 9.45 16 11 O -0.55 -11.05 11.67 5.56 0.06 -10.99 16 12 N -0.61 -11.64 3.32 -170.53 -0.57 -12.21 16 13 C 0.10 1.68 5.13 -2.53 -0.01 1.67 16 14 C -0.14 -2.90 5.56 -24.58 -0.14 -3.04 16 15 C 0.25 5.88 0.85 -89.94 -0.08 5.80 16 16 O -0.59 -14.55 13.06 -35.23 -0.46 -15.01 16 17 C -0.53 -13.84 8.22 -34.44 -0.28 -14.12 16 18 H 0.06 1.69 7.56 -52.49 -0.40 1.29 16 19 C 0.07 1.85 5.29 -17.82 -0.09 1.75 16 20 N -0.90 -22.77 10.69 55.43 0.59 -22.17 16 21 Si 0.90 20.13 29.54 -169.99 -5.02 15.11 16 22 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 C 0.12 2.74 6.22 -3.07 -0.02 2.72 16 26 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.09 1.41 5.51 -51.93 -0.29 1.13 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.09 1.56 5.51 -51.93 -0.29 1.27 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.66 8.14 -51.92 -0.42 0.23 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 1.02 7.22 -51.93 -0.37 0.65 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.97 5.00 -51.93 -0.26 0.71 16 37 H 0.06 0.89 7.36 -51.93 -0.38 0.50 16 38 H 0.06 1.09 7.07 -51.93 -0.37 0.73 16 39 H 0.07 1.45 8.04 -51.93 -0.42 1.03 16 40 H 0.09 1.89 7.64 -51.93 -0.40 1.49 16 41 H 0.38 9.53 7.28 45.56 0.33 9.86 16 42 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 43 H 0.06 1.38 8.07 -51.93 -0.42 0.96 16 44 H 0.07 1.60 7.66 -51.93 -0.40 1.21 16 LS Contribution 326.55 15.07 4.92 4.92 Total: -1.00 -26.79 326.55 -8.38 -35.16 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -6.58 Total: 12.12 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: -1.33 Total: -6.93 kcal Atomic # 7 Polarization: -34.41 SS G_CDS: 0.03 Total: -34.38 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: -0.40 Total: -25.99 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -26.79 -8.38 -35.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592852325.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.576 kcal (2) G-P(sol) polarization free energy of solvation -26.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds